Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_D23
(418 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g16780.1 68418.m01965 SART-1 family protein contains Pfam dom... 97 4e-21
At3g14700.1 68416.m01859 expressed protein 60 6e-10
At1g02380.1 68414.m00184 expressed protein 29 1.7
At5g44800.1 68418.m05492 chromodomain-helicase-DNA-binding famil... 28 2.9
At3g61600.2 68416.m06901 BTB/POZ domain-containing protein conta... 28 2.9
At3g61600.1 68416.m06900 BTB/POZ domain-containing protein conta... 28 2.9
At4g27435.1 68417.m03943 expressed protein 27 3.8
At1g17440.2 68414.m02133 transcription initiation factor IID (TF... 27 5.1
At1g17440.1 68414.m02132 transcription initiation factor IID (TF... 27 5.1
At5g59820.1 68418.m07500 zinc finger (C2H2 type) family protein ... 27 6.7
At2g27310.1 68415.m03282 F-box family protein contains Pfam PF00... 27 6.7
At2g21050.1 68415.m02499 amino acid permease, putative similar t... 27 6.7
At1g77690.1 68414.m09046 amino acid permease, putative similar t... 27 6.7
At1g20100.1 68414.m02515 expressed protein 27 6.7
At5g63370.1 68418.m07954 protein kinase family protein contains ... 26 8.9
At5g01240.1 68418.m00031 amino acid permease, putative strong si... 26 8.9
At1g61065.1 68414.m06875 expressed protein 26 8.9
At1g02040.1 68414.m00124 zinc finger (C2H2 type) family protein ... 26 8.9
>At5g16780.1 68418.m01965 SART-1 family protein contains Pfam
domain, PF03343: SART-1 family
Length = 820
Score = 97.1 bits (231), Expect = 4e-21
Identities = 43/81 (53%), Positives = 62/81 (76%)
Frame = +3
Query: 9 IKLEYVDDEGRPLPPKEAFRYLSHKFHGKGPGKNKQEKRIKKAVQEGLMKKMSSTDTPLG 188
I++E D+ GR L PKEAFR LSHKFHGKGPGK K+EKR+K+ +E +K+M ++DTP
Sbjct: 682 IRIERTDEFGRTLTPKEAFRLLSHKFHGKGPGKMKEEKRMKQYQEELKLKQMKNSDTPSQ 741
Query: 189 TLQMLQEKQRETHSPFIVLSG 251
++Q ++E Q + +P++VLSG
Sbjct: 742 SVQRMREAQAQLKTPYLVLSG 762
>At3g14700.1 68416.m01859 expressed protein
Length = 204
Score = 60.1 bits (139), Expect = 6e-10
Identities = 33/79 (41%), Positives = 51/79 (64%)
Frame = +3
Query: 9 IKLEYVDDEGRPLPPKEAFRYLSHKFHGKGPGKNKQEKRIKKAVQEGLMKKMSSTDTPLG 188
I+++ V+ GR + KEA+R L H FHGKGPGK KQEK+ KK E K+M S++
Sbjct: 131 IQIQRVNKWGRIMTEKEAYRSLCHGFHGKGPGKKKQEKQRKK--HEDKSKQMESSER--- 185
Query: 189 TLQMLQEKQRETHSPFIVL 245
+++ ++E + +P+IVL
Sbjct: 186 SVERIREIHAISKTPYIVL 204
>At1g02380.1 68414.m00184 expressed protein
Length = 209
Score = 28.7 bits (61), Expect = 1.7
Identities = 13/51 (25%), Positives = 28/51 (54%)
Frame = +3
Query: 93 KGPGKNKQEKRIKKAVQEGLMKKMSSTDTPLGTLQMLQEKQRETHSPFIVL 245
KGP ++ +++I + +QE M+K + + +L+ L+ + SP I +
Sbjct: 97 KGPSLSENDRKIMRDIQELAMRKRARIERMKKSLKRLKAAKTSPSSPCITI 147
>At5g44800.1 68418.m05492 chromodomain-helicase-DNA-binding family
protein / CHD family protein similar to chromatin
remodeling factor CHD3 (PICKLE) [Arabidopsis thaliana]
GI:6478518; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain, PF00628: PHD-finger, PF00385:
'chromo' (CHRromatin Organization MOdifier)
Length = 2228
Score = 27.9 bits (59), Expect = 2.9
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = +3
Query: 93 KGPGKNKQEKRIKKAVQEGLMKKMSSTDTPLGTLQMLQEKQR 218
K P +K++K+ + + L K S T+TP ++ +E++R
Sbjct: 312 KSPESSKKKKKKNRVTLKSLSKPQSKTETPEKVKKLPKEERR 353
>At3g61600.2 68416.m06901 BTB/POZ domain-containing protein contains
Pfam PF00651: BTB/POZ domain; contains Interpro
IPR000210/ PS50097: BTBB/POZ domain; similar to POZ/BTB
containing-protein AtPOB1 (GI:12006855) [Arabidopsis
thaliana]; similar to actinfilin (GI:21667852) [Rattus
norvegicus]
Length = 561
Score = 27.9 bits (59), Expect = 2.9
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +2
Query: 119 EADQEGCPGGVNEEDE 166
+ D +GCPGG N +DE
Sbjct: 105 QPDMDGCPGGENPDDE 120
>At3g61600.1 68416.m06900 BTB/POZ domain-containing protein contains
Pfam PF00651: BTB/POZ domain; contains Interpro
IPR000210/ PS50097: BTBB/POZ domain; similar to POZ/BTB
containing-protein AtPOB1 (GI:12006855) [Arabidopsis
thaliana]; similar to actinfilin (GI:21667852) [Rattus
norvegicus]
Length = 561
Score = 27.9 bits (59), Expect = 2.9
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +2
Query: 119 EADQEGCPGGVNEEDE 166
+ D +GCPGG N +DE
Sbjct: 105 QPDMDGCPGGENPDDE 120
>At4g27435.1 68417.m03943 expressed protein
Length = 173
Score = 27.5 bits (58), Expect = 3.8
Identities = 18/39 (46%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = -1
Query: 223 VSLCFSCSICSVPSGV-SVELIFFINPSWTAFLIRFSCL 110
VS CF C P G ++ LI FI SW FLI CL
Sbjct: 72 VSRCFCCGKPLKPGGSRALALILFI-VSWMFFLIAEICL 109
>At1g17440.2 68414.m02133 transcription initiation factor IID
(TFIID) subunit A family protein similar to SP|Q16514
Transcription initiation factor TFIID 20/15 kDa subunits
(TAFII-20/TAFII-15) {Homo sapiens}; contains Pfam
profile PF03847: Transcription initiation factor TFIID
subunit A
Length = 683
Score = 27.1 bits (57), Expect = 5.1
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +3
Query: 45 LPPKEAFRYLSHKFHGKGPGKNKQEKRIKKAVQEGLMKK 161
L PK+ +L H PG + ++KR K V L KK
Sbjct: 581 LEPKDILLHLEKNLHLTIPGFSSEDKRQTKTVPTDLHKK 619
>At1g17440.1 68414.m02132 transcription initiation factor IID
(TFIID) subunit A family protein similar to SP|Q16514
Transcription initiation factor TFIID 20/15 kDa subunits
(TAFII-20/TAFII-15) {Homo sapiens}; contains Pfam
profile PF03847: Transcription initiation factor TFIID
subunit A
Length = 683
Score = 27.1 bits (57), Expect = 5.1
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +3
Query: 45 LPPKEAFRYLSHKFHGKGPGKNKQEKRIKKAVQEGLMKK 161
L PK+ +L H PG + ++KR K V L KK
Sbjct: 581 LEPKDILLHLEKNLHLTIPGFSSEDKRQTKTVPTDLHKK 619
>At5g59820.1 68418.m07500 zinc finger (C2H2 type) family protein
(ZAT12) identical to zinc finger protein ZAT12
[Arabidopsis thaliana] gi|1418325|emb|CAA67232
Length = 162
Score = 26.6 bits (56), Expect = 6.7
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Frame = +3
Query: 3 TRIKLEYVD--DEGRPLPPKEAFRYLSHKFHGKGPGKNKQEKRIKKAVQEGLMKKMSSTD 176
+R+ E VD D+ R K + H F G + +K A+ GLMKK+ ++
Sbjct: 23 SRVGQENVDGGDQKRVFTCKTCLKQF-HSFQALGGHRASHKKPNNDALSSGLMKKVKTSS 81
Query: 177 TP 182
P
Sbjct: 82 HP 83
>At2g27310.1 68415.m03282 F-box family protein contains Pfam
PF00646: F-box domain;; similar to SKP1 interacting
partner 2 (SKIP2) TIGR_Ath1:At5g67250
Length = 337
Score = 26.6 bits (56), Expect = 6.7
Identities = 13/52 (25%), Positives = 28/52 (53%)
Frame = +3
Query: 9 IKLEYVDDEGRPLPPKEAFRYLSHKFHGKGPGKNKQEKRIKKAVQEGLMKKM 164
++L+ D EG+ + +++ L GK K+ +E+R K+ +E + K+
Sbjct: 251 VRLQVEDIEGKCMKGRDSLVILQGLLDGKRSCKDDEERRAKERYEEYVRMKI 302
>At2g21050.1 68415.m02499 amino acid permease, putative similar to
AUX1 [Arabidopsis thaliana] GI:1531758; contains Pfam
profile PF01490: Transmembrane amino acid transporter
protein
Length = 483
Score = 26.6 bits (56), Expect = 6.7
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = -1
Query: 223 VSLCFSCSICSVPSGVSVELIFFINPSWTAFLI 125
++L +S S + SG+ +L + I SWTA+LI
Sbjct: 59 LTLPYSFSQLGMLSGILFQLFYGILGSWTAYLI 91
>At1g77690.1 68414.m09046 amino acid permease, putative similar to
AUX1 (regulator of root gravitropism, putative permease)
GI:1531758 GB:CAA67308 from [Arabidopsis thaliana];
contains Pfam profile PF01490: Transmembrane amino acid
transporter protein
Length = 470
Score = 26.6 bits (56), Expect = 6.7
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = -1
Query: 223 VSLCFSCSICSVPSGVSVELIFFINPSWTAFLI 125
++L +S S + SG+ +L + + SWTA+LI
Sbjct: 63 LTLPYSFSQLGMMSGILFQLFYGLMGSWTAYLI 95
>At1g20100.1 68414.m02515 expressed protein
Length = 285
Score = 26.6 bits (56), Expect = 6.7
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = +3
Query: 75 SHKFHGKGPGKNKQEKRIKKAVQEGLMKKMSSTDT 179
S K H K + K+EK++KK ++ L +K S+T T
Sbjct: 35 SKKLHRKEKKEKKKEKKLKKE-KKSLEQKYSTTKT 68
>At5g63370.1 68418.m07954 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 612
Score = 26.2 bits (55), Expect = 8.9
Identities = 12/47 (25%), Positives = 25/47 (53%)
Frame = +3
Query: 42 PLPPKEAFRYLSHKFHGKGPGKNKQEKRIKKAVQEGLMKKMSSTDTP 182
P+ P EA + H G+ ++E+ +++ V+EGL+++ P
Sbjct: 144 PVQPSEALLAVKHPVDDLEEGQLEEEQVMQEDVKEGLLEEEQVMQEP 190
>At5g01240.1 68418.m00031 amino acid permease, putative strong
similarity to AUX1 GI:1531758 from [Arabidopsis
thaliana]; contains Pfam profile PF01490: Transmembrane
amino acid transporter protein
Length = 488
Score = 26.2 bits (55), Expect = 8.9
Identities = 11/33 (33%), Positives = 22/33 (66%)
Frame = -1
Query: 223 VSLCFSCSICSVPSGVSVELIFFINPSWTAFLI 125
++L +S S + SG+ +++ + + SWTA+LI
Sbjct: 70 LTLPYSFSQLGMLSGILLQIFYGLMGSWTAYLI 102
>At1g61065.1 68414.m06875 expressed protein
Length = 180
Score = 26.2 bits (55), Expect = 8.9
Identities = 13/37 (35%), Positives = 14/37 (37%)
Frame = -1
Query: 220 SLCFSCSICSVPSGVSVELIFFINPSWTAFLIRFSCL 110
S C C PSG IF +W F I CL
Sbjct: 72 SRCLCCGRALTPSGSRSWAIFLFITTWVFFFIAQVCL 108
>At1g02040.1 68414.m00124 zinc finger (C2H2 type) family protein
contains Pfam profile: PF00096 zinc finger, C2H2 type
Length = 324
Score = 26.2 bits (55), Expect = 8.9
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +3
Query: 78 HKFHGKGPGKNKQEKRIKKAVQEGLMKKMSSTDTPLG 188
HK HG G GK ++++ + Q KK+ ++ LG
Sbjct: 130 HKQHGHGKGKTVKKQKTAQVFQCKACKKVFTSHQALG 166
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,068,334
Number of Sequences: 28952
Number of extensions: 128982
Number of successful extensions: 513
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 513
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 635399168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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