Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_D22
(529 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1672.09 |||triglyceride lipase-cholesterol esterase |Schizos... 33 0.035
SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces pombe... 31 0.11
SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit ... 28 0.75
SPBC27.06c |mgr2||mitochondrial membrane protein Mgr1 |Schizosac... 26 4.0
SPCP1E11.08 |||ribosome biogenesis protein Nsa2 |Schizosaccharom... 26 4.0
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 26 4.0
SPBC691.05c ||SPBP22H7.01c|membrane transporter |Schizosaccharom... 26 4.0
SPBC13G1.03c |pex14||peroxisomal membrane anchor protein|Schizos... 25 7.0
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S... 25 7.0
SPAC343.15 |||tRNA isopentenyltransferase|Schizosaccharomyces po... 25 7.0
>SPCC1672.09 |||triglyceride lipase-cholesterol esterase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 467
Score = 32.7 bits (71), Expect = 0.035
Identities = 18/86 (20%), Positives = 42/86 (48%)
Frame = -2
Query: 258 NYTNIPNIAQHAPAGSSINQLLHYFQLVNSGEFHKFDYRKQKNIKIYGTPVPPSYSLEHV 79
+Y + + A H + +S+ L+H+FQ++ S EF +D + + + ++
Sbjct: 319 SYQRLVSFA-HLYSYTSVKCLVHWFQIMRSAEFRMYDNDQLGHDYFLKYYKAAKFPTNNI 377
Query: 78 SAPVFIFYSDNDWLISAIDANVTLVP 1
P+++ + +D L+ I A + +P
Sbjct: 378 RTPIYLIWGGSDSLVD-IQAMLNALP 402
>SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 652
Score = 31.1 bits (67), Expect = 0.11
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -2
Query: 162 FHKFDYRKQKNIKIYGTPVPPSYSLEHVSAPV 67
F +FD+R K + +YG P P + +E V P+
Sbjct: 571 FRRFDFRGVKAVVMYGPPTNPQFYVELVRMPM 602
>SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit
Sec63 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 611
Score = 28.3 bits (60), Expect = 0.75
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = -2
Query: 192 HYFQLVNSGEFHKFDYRKQKNIKIYGTPVPPSYSLEHVSAPVFIFYSDN 46
HY ++ N+ D + ++N +YGTP P + ++ P +I S+N
Sbjct: 144 HYIEITNAYRALTDD-KTRENYALYGTPDVPQHISVGIALPKWISESEN 191
>SPBC27.06c |mgr2||mitochondrial membrane protein Mgr1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 120
Score = 25.8 bits (54), Expect = 4.0
Identities = 15/57 (26%), Positives = 24/57 (42%)
Frame = -2
Query: 486 SGVGFQSTFGSLAVIPLSPVARFFLSCLRAIQISCSLTSGXXXXXXXXXXXIMLPVI 316
+G+G FG +AV+ P R FL L ++ + T G +P+I
Sbjct: 22 AGLGIGFLFGGVAVLRYGPGPRGFLRTLGQYMLTSAATFGFFMSIGSVIRNEDIPLI 78
>SPCP1E11.08 |||ribosome biogenesis protein Nsa2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 260
Score = 25.8 bits (54), Expect = 4.0
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +2
Query: 395 MALKQLRKNRATGDNGITAKLPKVD*KPTPES 490
MAL+Q + N + G+T +LP + K P+S
Sbjct: 174 MALRQKKANVTHKELGVTMQLPIIGVKKNPQS 205
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 25.8 bits (54), Expect = 4.0
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = -2
Query: 174 NSGEFHKFDYRKQKNIKIYGTPVP-PSYSLEHVSAPVFI 61
N + +YRK+K I ++G VP P + E P ++
Sbjct: 95 NRSDAEVTEYRKEKEIVVHGLNVPKPVTTFEEAGFPNYV 133
>SPBC691.05c ||SPBP22H7.01c|membrane transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 668
Score = 25.8 bits (54), Expect = 4.0
Identities = 18/73 (24%), Positives = 30/73 (41%)
Frame = -2
Query: 456 SLAVIPLSPVARFFLSCLRAIQISCSLTSGXXXXXXXXXXXIMLPVIIPTPLYLAFPFIG 277
++A +PL ++ L L AI +T +LP ++ L L F FI
Sbjct: 282 TIANVPLFLISGCILLFLIAIAFIVDVTLSEVYSGPLKSIVSLLPAVVFQVLTLPFTFI- 340
Query: 276 YDFLGQNYTNIPN 238
Y + + T + N
Sbjct: 341 YSIVAERLTKLEN 353
>SPBC13G1.03c |pex14||peroxisomal membrane anchor
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 286
Score = 25.0 bits (52), Expect = 7.0
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Frame = -1
Query: 436 ITSRPVFPEL--FESHSNFVQSDVRD 365
+ P+FP FE+ SNFV D RD
Sbjct: 46 LAKNPLFPSYPRFENTSNFVSRDWRD 71
>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1842
Score = 25.0 bits (52), Expect = 7.0
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = -1
Query: 448 CYSVITSRPVFPELFESHSNFVQSDVRDNMKYKNYP 341
C SVI + PVF + + D R N+ Y+ P
Sbjct: 476 CKSVIDAPPVFKNVNHPTAPSTTIDERGNLNYEEIP 511
>SPAC343.15 |||tRNA isopentenyltransferase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 434
Score = 25.0 bits (52), Expect = 7.0
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +1
Query: 325 KHNFEKDNFYISYYPGRQTARNLNGSQTAQEKPGD 429
+H FEK Y+S GRQ+ + + +K GD
Sbjct: 357 QHAFEKARDYLSIMNGRQSQKKKFVCEECLDKRGD 391
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,243,110
Number of Sequences: 5004
Number of extensions: 46743
Number of successful extensions: 130
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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