Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_D22
         (529 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0156 - 11963580-11963914,11964422-11964517,11964618-119646...    41   5e-04
08_02_1358 - 26372559-26372887,26373183-26373262,26373287-263734...    38   0.005
06_03_0852 - 25371461-25371783,25372080-25372159,25372472-253725...    37   0.012
09_01_0014 + 357398-357583,360213-360323,360520-360676,361067-36...    36   0.020
03_05_0329 - 23211636-23211857,23211946-23212079,23212170-232124...    29   3.1  
05_04_0186 + 18866762-18866949,18867207-18867345,18868068-188682...    27   9.3  
01_03_0229 + 13995610-13995844,13996391-13996445,13998126-139982...    27   9.3  

>04_03_0156 -
           11963580-11963914,11964422-11964517,11964618-11964697,
           11965250-11965290,11965402-11965548,11965922-11966035,
           11968842-11968961,11969491-11969631,11969892-11970014,
           11970357-11970566
          Length = 468

 Score = 41.1 bits (92), Expect = 5e-04
 Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
 Frame = -2

Query: 228 HAPAGSSINQLLHYFQLVNSGEFHKFDY-RKQKNIKIYGTPVPPSYSLEHVSA--PVFIF 58
           H P  ++   ++H  Q++  G   K+DY     N + YG   PP+Y +  +    P+F+ 
Sbjct: 342 HEPQATATKNMIHLAQMIRGGTIAKYDYGNAGDNREHYGQATPPAYDVTAIPGDFPLFLS 401

Query: 57  YSDNDWLISAIDAN 16
           Y   D L    D +
Sbjct: 402 YGGRDSLSDVQDVS 415


>08_02_1358 -
           26372559-26372887,26373183-26373262,26373287-26373420,
           26373546-26373689,26373809-26373919,26374165-26374305,
           26376839-26376964,26377072-26377263
          Length = 418

 Score = 37.9 bits (84), Expect = 0.005
 Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
 Frame = -2

Query: 216 GSSINQLLHYFQLVNSGEFHKFDY-RKQKNIKIYGTPVPPSYSLEHVSA--PVFIFYSDN 46
           G +   LL  F  V  G   K+DY     N+  YG   PP+Y +  + A  P+F+ Y   
Sbjct: 298 GMNCYDLLTSFTAVRDGVLTKYDYVMPDANVARYGQADPPAYDMAAIPAWFPIFLSYGGR 357

Query: 45  DWLISAIDANVTL 7
           D L    D  + L
Sbjct: 358 DSLSDPADVALLL 370


>06_03_0852 -
           25371461-25371783,25372080-25372159,25372472-25372554,
           25372597-25372740,25372836-25372946,25373238-25373354,
           25373436-25373562,25374160-25374296
          Length = 373

 Score = 36.7 bits (81), Expect = 0.012
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
 Frame = -2

Query: 180 LVNSGEFHKFDYRKQK-NIKIYGTPVPPSYSLEHV--SAPVFIFYSDNDWL 37
           +V +G   +FDY   K N+K Y  P PP Y+L  +    P+F+ +   D+L
Sbjct: 267 VVRNGGVSRFDYGNAKDNMKHYNQPRPPPYNLSSIPNHVPIFLTHGGEDYL 317


>09_01_0014 +
           357398-357583,360213-360323,360520-360676,361067-361233,
           362012-362122,362206-362349,362436-362476,364134-364174,
           364175-364261,365402-365724
          Length = 455

 Score = 35.9 bits (79), Expect = 0.020
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
 Frame = -2

Query: 180 LVNSGEFHKFDYRKQKNIKIYGTPVPPSYSLEHV--SAPVFIFYSDNDWLISAIDANVTL 7
           ++  G F K+DY    N++ YG   PP++ L  +  S P+++ Y   D L    D   T+
Sbjct: 349 VIRKGTFAKYDYGLLGNLRRYGHLRPPAFDLSSIPESLPIWMGYGGLDALADVTDVQRTI 408


>03_05_0329 -
           23211636-23211857,23211946-23212079,23212170-23212476,
           23212760-23213113
          Length = 338

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = -1

Query: 520 TRLAFERASEGLRGRFSIDLRQ-FGCYSVITSRPVFP 413
           TR A E    GL   F +D    F CYS + S+P  P
Sbjct: 246 TREALESKMSGLSPSFLLDKEDVFACYSAMLSQPTSP 282


>05_04_0186 +
           18866762-18866949,18867207-18867345,18868068-18868295,
           18869023-18869081,18869411-18869482,18870239-18870287,
           18870431-18870661,18872018-18872187,18872274-18872478,
           18872826-18873494,18873592-18873819,18873901-18874689
          Length = 1008

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -2

Query: 135 KNIKIYGTPVPPSYSLEHVSAPVFIFYSDNDW 40
           ++++ Y   VPP+  LE+   P+F FY  N W
Sbjct: 301 EHLQSYEISVPPNSVLEYTIPPLF-FYKPNLW 331


>01_03_0229 +
           13995610-13995844,13996391-13996445,13998126-13998211,
           13999484-13999671,14000111-14000169,14000618-14000646,
           14000742-14001138,14001569-14002028
          Length = 502

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -2

Query: 288 PFIGYDFLGQNYTNIPNIAQHAPAGSSINQLLHYFQLVNS 169
           P   +DF+GQN+T+  ++   AP  +     + YFQ + S
Sbjct: 215 PVTFHDFMGQNFTS-EHLPVSAPGATPPGPYIAYFQPLQS 253


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,951,987
Number of Sequences: 37544
Number of extensions: 272346
Number of successful extensions: 560
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 560
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1166441080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)