Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_D22
         (529 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14579| Best HMM Match : No HMM Matches (HMM E-Value=.)              74   8e-14
SB_39520| Best HMM Match : Abhydrolase_1 (HMM E-Value=2)               59   2e-09
SB_53067| Best HMM Match : No HMM Matches (HMM E-Value=.)              56   1e-08
SB_26325| Best HMM Match : No HMM Matches (HMM E-Value=.)              53   1e-07
SB_16276| Best HMM Match : No HMM Matches (HMM E-Value=.)              53   1e-07
SB_21051| Best HMM Match : Abhydro_lipase (HMM E-Value=1.8e-33)        40   0.001
SB_28115| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   0.015
SB_43249| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_58083| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_23967| Best HMM Match : SRCR (HMM E-Value=5.4e-11)                  28   4.1  
SB_43816| Best HMM Match : DUF755 (HMM E-Value=6.3)                    27   7.2  
SB_42160| Best HMM Match : RVT_1 (HMM E-Value=0)                       27   7.2  
SB_32796| Best HMM Match : MSG (HMM E-Value=2.7)                       27   7.2  
SB_8718| Best HMM Match : Lipase_GDSL (HMM E-Value=0.023)              27   7.2  
SB_45895| Best HMM Match : RVT_1 (HMM E-Value=0.00031)                 27   7.2  
SB_40728| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.2  
SB_27722| Best HMM Match : RVT_1 (HMM E-Value=0.00011)                 27   7.2  
SB_26566| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.2  
SB_22389| Best HMM Match : RVT_1 (HMM E-Value=1.6e-37)                 27   7.2  
SB_12127| Best HMM Match : Endonuclease_NS (HMM E-Value=2.9e-35)       27   7.2  

>SB_14579| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 129

 Score = 73.7 bits (173), Expect = 8e-14
 Identities = 29/82 (35%), Positives = 47/82 (57%)
 Frame = -2

Query: 252 TNIPNIAQHAPAGSSINQLLHYFQLVNSGEFHKFDYRKQKNIKIYGTPVPPSYSLEHVSA 73
           T +P    H PAG+S+  ++HY Q+  S +F  +DY K  NIK YG   PP Y++  ++ 
Sbjct: 1   TRLPVYISHTPAGTSVKNMIHYAQMYKSKKFEMYDYGKD-NIKRYGQNTPPQYNISAITV 59

Query: 72  PVFIFYSDNDWLISAIDANVTL 7
           P  +++  NDWL    D ++ +
Sbjct: 60  PTMLYWGGNDWLADPDDVSLLM 81


>SB_39520| Best HMM Match : Abhydrolase_1 (HMM E-Value=2)
          Length = 265

 Score = 59.3 bits (137), Expect = 2e-09
 Identities = 26/88 (29%), Positives = 43/88 (48%)
 Frame = -2

Query: 282 IGYDFLGQNYTNIPNIAQHAPAGSSINQLLHYFQLVNSGEFHKFDYRKQKNIKIYGTPVP 103
           +G+D    N T +P    H   G+S   ++H+ Q++      KFDY +  N+K Y    P
Sbjct: 132 VGFDSPNINETRVPVYVSHFFEGTSFKDIVHFSQMMYQNRCQKFDYGEAGNMKRYNKTTP 191

Query: 102 PSYSLEHVSAPVFIFYSDNDWLISAIDA 19
           P   ++ +  P  +FY + D L   +DA
Sbjct: 192 PLCHVQDMPTPTVLFYGEKDGLGDPVDA 219


>SB_53067| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 668

 Score = 56.4 bits (130), Expect = 1e-08
 Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
 Frame = -2

Query: 291 FPFIGYDFLGQNYTNIPNIAQHAPAGSSINQLLHYFQLVNSGEFHKFDY-RKQKNIKIYG 115
           F   G D    N T +P    H PAG+S+  ++H+ Q+    +F  +DY   +KN   Y 
Sbjct: 526 FLIAGMDRSQLNETRLPIYISHTPAGTSVKNVVHFAQIFREKKFQMYDYGSAEKNKHKYN 585

Query: 114 TPVPPSYSLEHVSAPVFIFYSDNDWLISAID 22
              PP Y++  V  P  +++  +D L    D
Sbjct: 586 QDTPPQYNVSAVKVPSALYWGGHDVLADPTD 616


>SB_26325| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 130

 Score = 53.2 bits (122), Expect = 1e-07
 Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
 Frame = -2

Query: 252 TNIPNIAQHAPAGSSINQLLHYFQLVNSGEFHKFDY-RKQKNIKIYGTPVPPSYSLEHVS 76
           T +P    H PAG+S+  ++H+ Q+    +F  +DY   +KN   Y    PP Y++  V 
Sbjct: 1   TRLPIYISHTPAGTSVKNVVHFAQIFREKKFQMYDYGSAEKNKHKYNQDTPPQYNVSAVK 60

Query: 75  APVFIFYSDNDWLISAID 22
            P  +++  +D L    D
Sbjct: 61  VPSALYWGGHDVLADPTD 78


>SB_16276| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 130

 Score = 53.2 bits (122), Expect = 1e-07
 Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
 Frame = -2

Query: 252 TNIPNIAQHAPAGSSINQLLHYFQLVNSGEFHKFDY-RKQKNIKIYGTPVPPSYSLEHVS 76
           T +P    H PAG+S+  ++H+ Q+    +F  +DY   +KN   Y    PP Y++  V 
Sbjct: 1   TRLPIYISHTPAGTSVKNVVHFAQIFREKKFQMYDYGSAEKNKHKYNQDTPPQYNVSAVK 60

Query: 75  APVFIFYSDNDWLISAID 22
            P  +++  +D L    D
Sbjct: 61  VPSALYWGGHDVLADPTD 78


>SB_21051| Best HMM Match : Abhydro_lipase (HMM E-Value=1.8e-33)
          Length = 991

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 18/55 (32%), Positives = 30/55 (54%)
 Frame = -2

Query: 279 GYDFLGQNYTNIPNIAQHAPAGSSINQLLHYFQLVNSGEFHKFDYRKQKNIKIYG 115
           G+D    N + +P I  H  +G+S   ++H+ Q+V SG+  K++Y    N   YG
Sbjct: 340 GFDSSNLNMSRVPVIMSHWGSGTSFKNMVHFGQMVTSGKCQKYNYGYFYNWMKYG 394


>SB_28115| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 698

 Score = 29.5 bits (63), Expect(2) = 0.015
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -2

Query: 279 GYDFLGQNYTNIPNIAQHAPAGSSINQLLHYFQLVN 172
           G+D    N + +P    H P+G+S   ++H+ Q+ N
Sbjct: 224 GFDDGNANMSRVPVFFTHFPSGTSFKNIIHFGQVHN 259



 Score = 25.8 bits (54), Expect(2) = 0.015
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 189 YFQLVNSGEFHKFDYRKQKNIKIYG 115
           +  +V  G   +FDY K++N+K YG
Sbjct: 298 FSSIVYYGRTARFDYGKRRNMKRYG 322


>SB_43249| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 255

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -1

Query: 436 ITSRPVFPELFESHSNFVQSDVRDNMKYKNYPFRNY 329
           I +RPV P+ FE   +FV+     ++KY+   F  Y
Sbjct: 203 IGARPVQPQTFERDDSFVKKATGQDIKYEEIKFCRY 238


>SB_58083| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 727

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
 Frame = -2

Query: 204 NQLLHY-----FQLVNSGEFHKFDYRKQKNIKIYGTPVPPSYSLEHVSAPVFIFYSDNDW 40
           N++ HY     + L+  GE      R+Q+ I + GT +P        SA +  F   + W
Sbjct: 255 NKVRHYTDSRPYHLLKQGE----TLRRQRTISLTGTRLPEPARRVSCSAAISTFNLSSSW 310

Query: 39  LISAI 25
           LI A+
Sbjct: 311 LIMAV 315


>SB_23967| Best HMM Match : SRCR (HMM E-Value=5.4e-11)
          Length = 3369

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +1

Query: 247  VSVILSKEVIANKRKCQVKWCGNDNRKHNFEKDNF 351
            V  ++ K++   K K  + W GN N K  FE D+F
Sbjct: 1811 VRSLVHKDIFVVKDKALLWWSGNVNSKVMFEVDSF 1845


>SB_43816| Best HMM Match : DUF755 (HMM E-Value=6.3)
          Length = 539

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 29/114 (25%), Positives = 50/114 (43%), Gaps = 6/114 (5%)
 Frame = +1

Query: 109 WSTVNFYVFLFTIIKFM-KFSGIY*LKIMQQLINR*----PCRCVLSNV-WYVSVILSKE 270
           W+T   + +LFT+     K+  IY  K +   IN       CR   +N  W  S I  K 
Sbjct: 247 WTTSFSWDYLFTLESCQQKWDFIY--KTLSVAINTFLPSKVCRIHGNNKPWLSSAI--KA 302

Query: 271 VIANKRKCQVKWCGNDNRKHNFEKDNFYISYYPGRQTARNLNGSQTAQEKPGDW 432
           +I+ ++KC +   G D+++  + ++   +     +Q   N   +   Q  PG W
Sbjct: 303 MISKRQKC-LSLFGKDSQQFRYWRNKVQVHIKDCKQRFYNAKVATLKQSNPGRW 355


>SB_42160| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 1858

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = +2

Query: 371  DVRLHEI*MALKQLRKNRATGDNGITAKLPK 463
            ++RL E+ +A++ L+ N+A G + I  +L K
Sbjct: 1270 EIRLEEVKLAIENLKNNKAPGHDNILNELLK 1300


>SB_32796| Best HMM Match : MSG (HMM E-Value=2.7)
          Length = 270

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = +2

Query: 371 DVRLHEI*MALKQLRKNRATGDNGITAKLPK 463
           ++RL E+ +A++ L+ N+A G + I  +L K
Sbjct: 183 EIRLEEVKLAIENLKNNKAPGHDNILNELLK 213


>SB_8718| Best HMM Match : Lipase_GDSL (HMM E-Value=0.023)
          Length = 836

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = +2

Query: 371 DVRLHEI*MALKQLRKNRATGDNGITAKLPK 463
           ++RL E+ +A++ L+ N+A G + I  +L K
Sbjct: 627 EIRLEEVKLAIENLKNNKAPGHDNILNELLK 657


>SB_45895| Best HMM Match : RVT_1 (HMM E-Value=0.00031)
          Length = 313

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = +2

Query: 371 DVRLHEI*MALKQLRKNRATGDNGITAKLPK 463
           ++RL E+ +A++ L+ N+A G + I  +L K
Sbjct: 26  EIRLEEVKLAIENLKNNKAPGHDNILNELLK 56


>SB_40728| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1317

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = +2

Query: 371  DVRLHEI*MALKQLRKNRATGDNGITAKLPK 463
            ++RL E+ +A++ L+ N+A G + I  +L K
Sbjct: 990  EIRLEEVKLAIENLKNNKAPGHDNILNELLK 1020


>SB_27722| Best HMM Match : RVT_1 (HMM E-Value=0.00011)
          Length = 315

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = +2

Query: 371 DVRLHEI*MALKQLRKNRATGDNGITAKLPK 463
           ++RL E+ +A++ L+ N+A G + I  +L K
Sbjct: 26  EIRLEEVKLAIENLKNNKAPGHDNILNELLK 56


>SB_26566| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1141

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = +2

Query: 371 DVRLHEI*MALKQLRKNRATGDNGITAKLPK 463
           ++RL E+ +A++ L+ N+A G + I  +L K
Sbjct: 253 EIRLEEVKLAIENLKNNKAPGHDNILNELLK 283


>SB_22389| Best HMM Match : RVT_1 (HMM E-Value=1.6e-37)
          Length = 458

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = +2

Query: 371 DVRLHEI*MALKQLRKNRATGDNGITAKLPK 463
           ++RL E+ +A++ L+ N+A G + I  +L K
Sbjct: 26  EIRLEEVKLAIENLKNNKAPGHDNILNELLK 56


>SB_12127| Best HMM Match : Endonuclease_NS (HMM E-Value=2.9e-35)
          Length = 1577

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/45 (28%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = -2

Query: 195  LHYFQLVN-SGEFHKFDYRKQKNIKIYGTPVPPSYSLEHVSAPVF 64
            ++ F L N + ++HKF+ R   N++IY   +    ++  +S P+F
Sbjct: 1359 MNTFLLSNIAPQYHKFNIRDWLNLEIYVRDLASGSTIYVISGPIF 1403


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,597,264
Number of Sequences: 59808
Number of extensions: 331882
Number of successful extensions: 824
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 816
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1197191618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)