Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_D22
         (529 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g15230.1 68415.m01737 lipase family protein similar to SP|P07...    58   3e-09
At5g14180.1 68418.m01658 lipase family protein similar to SP|Q64...    46   2e-05
At1g18460.1 68414.m02303 lipase family protein similar to triacy...    33   0.090
At1g10910.1 68414.m01253 pentatricopeptide (PPR) repeat-containi...    28   3.4  
At5g28080.1 68418.m03391 protein kinase family protein contains ...    28   4.5  
At1g47410.1 68414.m05250 expressed protein identical to hypothet...    27   5.9  

>At2g15230.1 68415.m01737 lipase family protein similar to SP|P07098
           Triacylglycerol lipase, gastric precursor (EC 3.1.1.3)
           {Homo sapiens}; contains Pfam profile PF04083:
           ab-hydrolase associated lipase region
          Length = 393

 Score = 58.4 bits (135), Expect = 3e-09
 Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
 Frame = -2

Query: 258 NYTNIPNIAQHAPAGSSINQLLHYFQLVNSGEFHKFDYRKQKNIKIYGTPVPPSYSLEHV 79
           N + I     + P  SS+  + H FQ++  G F ++DY   KN++ YG   PP + L H+
Sbjct: 261 NASKIEYYLDYEPHPSSVKNIRHLFQMIRKGTFAQYDYGYFKNLRTYGLSKPPEFILSHI 320

Query: 78  --SAPVFIFYSDNDWLISAIDANVTL 7
             S P+++ Y   D L    D   TL
Sbjct: 321 PASLPMWMGYGGTDGLADVTDVEHTL 346


>At5g14180.1 68418.m01658 lipase family protein similar to SP|Q64194
           Lysosomal acid lipase/cholesteryl ester hydrolase
           precursor (EC 3.1.1.13) {Rattus norvegicus}; contains
           Pfam profile PF04083: ab-hydrolase associated lipase
           region
          Length = 418

 Score = 45.6 bits (103), Expect = 2e-05
 Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
 Frame = -2

Query: 258 NYTNIPNIAQHAPAGSSINQLLHYFQLVNSGEFHKFDY-RKQKNIKIYGTPVPPSYSLEH 82
           N + I     + P  +S   ++H  Q V   E  K++Y    +NIK YG  +PP+Y++  
Sbjct: 286 NASTIDLFLANEPQSTSTKNMIHLAQTVRDKELRKYNYGSSDRNIKHYGQAIPPAYNISA 345

Query: 81  V--SAPVFIFYSDNDWLISAIDANVTL 7
           +    P+F  Y   D L    D    L
Sbjct: 346 IPHELPLFFSYGGLDSLADVKDVEFLL 372


>At1g18460.1 68414.m02303 lipase family protein similar to
           triacylglycerol lipase, gastric precursor (EC 3.1.1.3)
           {Canis familiaris} [SP|P80035]
          Length = 701

 Score = 33.5 bits (73), Expect = 0.090
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = -2

Query: 246 IPNIAQHAPAGSSINQLLHYFQLVNSGEFHKFDY-RKQKNIKIYGTPVP 103
           +P+   +   G S     H  Q+ +SG+F  FDY     N+ +YG+P P
Sbjct: 552 LPHYNMNDMPGISFRVAQHLAQIKHSGKFKMFDYGSSSANMDVYGSPEP 600


>At1g10910.1 68414.m01253 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 652

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -3

Query: 311 PHHFTWHFLLLAMTSLDRITLTYQTLLNTHLQGHR 207
           P + T+H L+          L YQT L+ H +GHR
Sbjct: 445 PDYNTFHILIKYFIKEKLHLLAYQTTLDMHSKGHR 479


>At5g28080.1 68418.m03391 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 406

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 15/58 (25%), Positives = 26/58 (44%)
 Frame = -2

Query: 213 SSINQLLHYFQLVNSGEFHKFDYRKQKNIKIYGTPVPPSYSLEHVSAPVFIFYSDNDW 40
           S+   L  +F  ++  +  + +  K   I   GTP+  SY + H S   +  Y+ N W
Sbjct: 186 SACELLDDHFLCIDESDMRRVESEKGL-IDEAGTPLRHSYHIPHYSNGYYSLYNQNQW 242


>At1g47410.1 68414.m05250 expressed protein identical to
           hypothetical protein GB:AAD46041 GI:5668815 from
           (Arabidopsis thaliana)
          Length = 189

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +2

Query: 398 ALKQLRKNRATGDNGITAKLPK-VD*KPTPESFRSSFKSQTC 520
           A+++LRK R TG  G+T K  K  D +    S RSSF S+ C
Sbjct: 59  AMEKLRKKRRTGMEGLTYKFVKEYDIENEFCSVRSSF-SECC 99


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,533,975
Number of Sequences: 28952
Number of extensions: 232916
Number of successful extensions: 815
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 815
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 977150592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)