Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_D21
(483 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 190 1e-49
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 105 5e-24
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 102 2e-23
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 101 4e-23
SPBC19G7.16 |iws1||transcription elongation factor complex subun... 27 2.0
SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces po... 26 2.6
SPBC21C3.08c |||ornithine aminotransferase|Schizosaccharomyces p... 25 6.0
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos... 25 6.0
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 190 bits (463), Expect = 1e-49
Identities = 83/118 (70%), Positives = 100/118 (84%)
Frame = +1
Query: 130 MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRGTSDLQLERISVYYNEASVATAE 309
MREIVH+QAGQCGNQ+GA FW I++EHG+D G+Y GTS+ Q ER++VY+NEA+
Sbjct: 1 MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHGTSEAQHERLNVYFNEAA----- 55
Query: 310 SGGKYVPRAILLDLEPGTMDAVRSGGYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAEL 483
GGKYVPRA+L+DLEPGTMDAV+SG +G LFRPDN ++GQSGAGN WAKGHYTEGAEL
Sbjct: 56 -GGKYVPRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAEL 112
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 105 bits (251), Expect = 5e-24
Identities = 52/120 (43%), Positives = 74/120 (61%), Gaps = 2/120 (1%)
Frame = +1
Query: 130 MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRGTSDLQLERISVYYNEA-SVATA 306
MRE++ + GQ G QIG WE+ EHGI P G T + ++ + + Y N+ +
Sbjct: 1 MREVISVHVGQAGVQIGNACWELYCLEHGIGPDGF--PTENSEVHKNNSYLNDGFGTFFS 58
Query: 307 ESG-GKYVPRAILLDLEPGTMDAVRSGGYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAEL 483
E+G GK+VPR+I +DLEP +D VR+G Y LF P+ V G+ A NN+A+GHYT G E+
Sbjct: 59 ETGQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEM 118
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 102 bits (245), Expect = 2e-23
Identities = 52/120 (43%), Positives = 68/120 (56%), Gaps = 2/120 (1%)
Frame = +1
Query: 130 MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRGTSDLQLER--ISVYYNEASVAT 303
MREI+ + GQ G QIG WE+ EHGI P G + Q S +++E
Sbjct: 1 MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQ-- 58
Query: 304 AESGGKYVPRAILLDLEPGTMDAVRSGGYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAEL 483
GKYVPR+I +DLEP +D VR+G Y LF P+ + G+ A NN+A+GHYT G EL
Sbjct: 59 ----GKYVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKEL 114
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 101 bits (243), Expect = 4e-23
Identities = 48/112 (42%), Positives = 72/112 (64%), Gaps = 2/112 (1%)
Frame = +1
Query: 133 REIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRGTSDLQLERISVYYNEASVATAES 312
REI+ LQAGQCGNQIG++FW+ + EHGI P G + ++R V++ ++
Sbjct: 3 REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFATEGVDRKDVFFYQS------D 56
Query: 313 GGKYVPRAILLDLEPGTMDAVRSGGYGQLFRPDNFVFGQS--GAGNNWAKGH 462
+Y+PRAIL+DLEP ++ + S YG L+ P+N + ++ GAGNNWA G+
Sbjct: 57 DTRYIPRAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANGY 108
>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 428
Score = 26.6 bits (56), Expect = 2.0
Identities = 10/34 (29%), Positives = 21/34 (61%)
Frame = +1
Query: 169 NQIGAKFWEIISEEHGIDPTGVYRGTSDLQLERI 270
N++G E+++E+ +DPT + DLQ++ +
Sbjct: 133 NELGENEEEVLTEQKQLDPTLAAKKELDLQMDAV 166
>SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 622
Score = 26.2 bits (55), Expect = 2.6
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +1
Query: 241 GTSDLQLERISVYYNEASVATAESGGKYVPRAILLDLE 354
G+SD+ + +S + EAS + S VP+ +L D +
Sbjct: 49 GSSDVTMTSVSGHLTEASFPSEYSSWSSVPQDVLFDAQ 86
>SPBC21C3.08c |||ornithine aminotransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 438
Score = 25.0 bits (52), Expect = 6.0
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 6/59 (10%)
Frame = +1
Query: 226 TGVYRGTSDLQLERISVYYNEASVATAESGGKYV------PRAILLDLEPGTMDAVRSG 384
TGV R L +E +V + + A SGG Y R I+L+ EPGT + G
Sbjct: 250 TGVARTGKMLCIEHSNVKPDVVILGKAISGGVYPVSAVLSSREIMLNFEPGTHGSTYGG 308
>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
Pof11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 506
Score = 25.0 bits (52), Expect = 6.0
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +1
Query: 382 GGYGQLFRPDNFVFGQSGAG-NNWAKGHYTEGAEL 483
G YG +F P F+F +G NW+ Y E A L
Sbjct: 157 GPYGTMFLPQQFIFDSNGRPLLNWSY-LYKEHAHL 190
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.315 0.135 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,555,741
Number of Sequences: 5004
Number of extensions: 27676
Number of successful extensions: 102
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.5 bits)
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