Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_D21
(483 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1086 - 27494238-27494914,27495471-27495740,27495986-27496379 210 4e-55
05_04_0306 + 20058640-20059159,20060406-20060819,20060921-200611... 210 4e-55
03_06_0176 + 32158462-32158855,32159960-32160229,32160328-32160998 208 2e-54
01_06_1060 + 34162161-34162554,34162613-34162675,34163262-341635... 207 3e-54
01_02_0004 - 10097759-10098438,10098973-10099242,10099956-10100349 207 3e-54
02_01_0499 + 3619909-3620302,3621123-3621392,3621788-3622467 207 4e-54
03_01_0034 + 318432-318825,318902-319851 201 2e-52
03_05_0575 + 25747813-25748206,25748567-25748614,25750296-257505... 199 1e-51
07_03_0994 + 23190344-23190456,23191367-23191581,23191663-231918... 105 2e-23
11_02_0058 + 7879859-7879951,7880844-7881078,7881165-7881535,788... 98 3e-21
03_05_0974 + 29324025-29324117,29325064-29325298,29325385-293257... 93 1e-19
05_01_0412 - 3248405-3248458,3248533-3248637,3248950-3249078,324... 87 7e-18
03_02_0186 - 6243487-6243799,6243892-6244400,6244495-6244557,624... 69 1e-12
09_03_0089 + 12265916-12267232 34 0.069
09_04_0070 + 14308446-14308511,14308844-14309005,14309420-143094... 31 0.64
01_01_0560 + 4117203-4117458,4119359-4119609,4119691-4119860,412... 31 0.64
09_04_0325 + 16689613-16689772,16690043-16690329 30 0.85
01_01_0624 - 4696314-4696608,4696704-4697394,4699525-4699540,469... 30 0.85
12_02_0931 + 24512496-24512567,24512705-24512806,24512939-245129... 28 3.4
03_02_0319 - 7421357-7421757,7421768-7421843,7424695-7424796,742... 28 4.5
11_06_0061 - 19702893-19703869,19703960-19704098,19704166-197042... 27 6.0
07_03_0252 - 15846143-15848473 27 6.0
07_01_1133 - 10550799-10551137,10552195-10552254,10555693-105574... 27 6.0
01_01_0562 + 4126368-4128196,4128517-4128715,4128827-4128886,412... 27 6.0
11_04_0054 - 12895574-12895840,12906985-12908121,12908274-12908591 27 7.9
06_03_0964 - 26372924-26372990,26373172-26373686 27 7.9
01_06_0549 + 30149016-30149761,30149922-30150088,30150236-301503... 27 7.9
>06_03_1086 - 27494238-27494914,27495471-27495740,27495986-27496379
Length = 446
Score = 210 bits (513), Expect = 4e-55
Identities = 95/118 (80%), Positives = 105/118 (88%)
Frame = +1
Query: 130 MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRGTSDLQLERISVYYNEASVATAE 309
MREI+H+Q GQCGNQIGAKFWE+I +EHGID TG Y G SDLQLERI+VYYNEAS
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEAS----- 55
Query: 310 SGGKYVPRAILLDLEPGTMDAVRSGGYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAEL 483
GG+YVPRA+L+DLEPGTMD+VRSG YGQ+FRPDNFVFGQSGAGNNWAKGHYTEGAEL
Sbjct: 56 -GGRYVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL 112
>05_04_0306 +
20058640-20059159,20060406-20060819,20060921-20061190,
20062179-20062849
Length = 624
Score = 210 bits (513), Expect = 4e-55
Identities = 92/119 (77%), Positives = 107/119 (89%)
Frame = +1
Query: 127 KMREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRGTSDLQLERISVYYNEASVATA 306
KMREI+H+Q GQCGNQIG+KFWE++ +EHGIDPTG Y GTSDLQLER++VYYNEAS
Sbjct: 180 KMREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYAGTSDLQLERVNVYYNEASC--- 236
Query: 307 ESGGKYVPRAILLDLEPGTMDAVRSGGYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAEL 483
G++VPRA+L+DLEPGTMD+VR+G YGQ+FRPDNFVFGQSGAGNNWAKGHYTEGAEL
Sbjct: 237 ---GRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL 292
>03_06_0176 + 32158462-32158855,32159960-32160229,32160328-32160998
Length = 444
Score = 208 bits (508), Expect = 2e-54
Identities = 93/118 (78%), Positives = 105/118 (88%)
Frame = +1
Query: 130 MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRGTSDLQLERISVYYNEASVATAE 309
MREI+H+Q GQCGNQIGAKFWE+I +EHG+D TG Y G SDLQLERI+VYYNEAS
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICDEHGVDATGRYAGDSDLQLERINVYYNEAS----- 55
Query: 310 SGGKYVPRAILLDLEPGTMDAVRSGGYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAEL 483
GG+YVPRA+L+DLEPGTMD+VRSG +GQ+FRPDNFVFGQSGAGNNWAKGHYTEGAEL
Sbjct: 56 -GGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL 112
>01_06_1060 +
34162161-34162554,34162613-34162675,34163262-34163531,
34163944-34164623
Length = 468
Score = 207 bits (506), Expect = 3e-54
Identities = 91/118 (77%), Positives = 105/118 (88%)
Frame = +1
Query: 130 MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRGTSDLQLERISVYYNEASVATAE 309
MREI+H+Q GQCGNQIGAKFWE++ +EHGIDPTG Y G SDLQLER++VYYNEAS
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCDEHGIDPTGRYTGNSDLQLERVNVYYNEASC---- 56
Query: 310 SGGKYVPRAILLDLEPGTMDAVRSGGYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAEL 483
G++VPRA+L+DLEPGTMD+VR+G YGQ+FRPDNFVFGQSGAGNNWAKGHYTEGAEL
Sbjct: 57 --GRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL 112
>01_02_0004 - 10097759-10098438,10098973-10099242,10099956-10100349
Length = 447
Score = 207 bits (506), Expect = 3e-54
Identities = 91/118 (77%), Positives = 106/118 (89%)
Frame = +1
Query: 130 MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRGTSDLQLERISVYYNEASVATAE 309
MREI+H+Q GQCGNQIG+KFWE++ +EHGIDPTG Y GTSDLQLER++VYYNEAS
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVGTSDLQLERVNVYYNEASC---- 56
Query: 310 SGGKYVPRAILLDLEPGTMDAVRSGGYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAEL 483
G++VPRA+L+DLEPGTMD+VR+G YGQ+FRPDNFVFGQSGAGNNWAKGHYTEGAEL
Sbjct: 57 --GRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL 112
>02_01_0499 + 3619909-3620302,3621123-3621392,3621788-3622467
Length = 447
Score = 207 bits (505), Expect = 4e-54
Identities = 93/118 (78%), Positives = 105/118 (88%)
Frame = +1
Query: 130 MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRGTSDLQLERISVYYNEASVATAE 309
MREI+H+Q GQCGNQIGAKFWE+I +EHGID TG Y G SDLQLERI+VYYNEAS
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEAS----- 55
Query: 310 SGGKYVPRAILLDLEPGTMDAVRSGGYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAEL 483
GG++VPRA+L+DLEPGTMD+VRSG +GQ+FRPDNFVFGQSGAGNNWAKGHYTEGAEL
Sbjct: 56 -GGRFVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL 112
>03_01_0034 + 318432-318825,318902-319851
Length = 447
Score = 201 bits (491), Expect = 2e-52
Identities = 90/118 (76%), Positives = 102/118 (86%)
Frame = +1
Query: 130 MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRGTSDLQLERISVYYNEASVATAE 309
MREI+H+Q GQCGNQIGAKFWE++ EHGID TG Y G SDLQLER++VYYNEAS
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDATGRYDGDSDLQLERVNVYYNEASC---- 56
Query: 310 SGGKYVPRAILLDLEPGTMDAVRSGGYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAEL 483
G++VPRA+L+DLEPGTMD+VRSG YG +FRPDNFVFGQSGAGNNWAKGHYTEGAEL
Sbjct: 57 --GRFVPRAVLMDLEPGTMDSVRSGPYGHIFRPDNFVFGQSGAGNNWAKGHYTEGAEL 112
>03_05_0575 +
25747813-25748206,25748567-25748614,25750296-25750565,
25750658-25751334
Length = 462
Score = 199 bits (485), Expect = 1e-51
Identities = 89/118 (75%), Positives = 102/118 (86%)
Frame = +1
Query: 130 MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRGTSDLQLERISVYYNEASVATAE 309
MREI+H+Q GQCGNQIGAKFWE+I EHG+DPTG Y GTS QLERI+VY+NEAS
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICGEHGVDPTGTYTGTSPQQLERINVYFNEAS----- 55
Query: 310 SGGKYVPRAILLDLEPGTMDAVRSGGYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAEL 483
GG++VPRA+L+DLEPGTMD++RSG G +FRPDNFVFGQSGAGNNWAKGHYTEGAEL
Sbjct: 56 -GGRHVPRAVLMDLEPGTMDSLRSGPIGGIFRPDNFVFGQSGAGNNWAKGHYTEGAEL 112
>07_03_0994 +
23190344-23190456,23191367-23191581,23191663-23191862,
23192420-23192928,23193048-23193363
Length = 450
Score = 105 bits (252), Expect = 2e-23
Identities = 53/119 (44%), Positives = 74/119 (62%), Gaps = 1/119 (0%)
Frame = +1
Query: 130 MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRGTSDLQLERISVYYNEASVATAE 309
MREI+ + GQ G Q+G WE+ EHGI+P G SD + V ++ + +E
Sbjct: 1 MREIISIHIGQAGIQVGNACWELYCLEHGIEPDGTM--PSDTT---VGVAHDAFNTFFSE 55
Query: 310 SG-GKYVPRAILLDLEPGTMDAVRSGGYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAEL 483
+G GK+VPRAI +DLEP +D VR+G Y QLF P+ + G+ A NN+A+GHYT G E+
Sbjct: 56 TGAGKHVPRAIFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEI 114
>11_02_0058 +
7879859-7879951,7880844-7881078,7881165-7881535,
7881648-7882304
Length = 451
Score = 98.3 bits (234), Expect = 3e-21
Identities = 48/120 (40%), Positives = 69/120 (57%), Gaps = 2/120 (1%)
Frame = +1
Query: 130 MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRGTSDLQL--ERISVYYNEASVAT 303
MRE + + GQ G Q+G WE+ EHGI P G G + + + +++E
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDKTVGGGDDAFNTFFSETGA-- 58
Query: 304 AESGGKYVPRAILLDLEPGTMDAVRSGGYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAEL 483
GK+VPRA+ +DLEP +D VR+G Y QLF P+ + G+ A NN+A+GHYT G E+
Sbjct: 59 ----GKHVPRAVFVDLEPTVIDEVRTGDYRQLFHPEQLISGKEDAANNFARGHYTIGKEI 114
>03_05_0974 +
29324025-29324117,29325064-29325298,29325385-29325755,
29325864-29326520
Length = 451
Score = 93.1 bits (221), Expect = 1e-19
Identities = 49/118 (41%), Positives = 67/118 (56%)
Frame = +1
Query: 130 MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRGTSDLQLERISVYYNEASVATAE 309
MRE + + GQ G Q+G WE+ EHGI G + SD + +N T
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQADG--QMPSDRTVGGGDDAFNTFFSETG- 57
Query: 310 SGGKYVPRAILLDLEPGTMDAVRSGGYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAEL 483
GK+VPRA+ +DLEP +D VR+G Y QLF P+ + G+ A NN+A+GHYT G E+
Sbjct: 58 -AGKHVPRAVFVDLEPTVIDEVRTGCYRQLFHPEQLINGKEDAANNFARGHYTIGKEI 114
>05_01_0412 -
3248405-3248458,3248533-3248637,3248950-3249078,
3249279-3249353,3249520-3249624,3249714-3249767,
3249970-3250370,3250583-3250694,3250886-3251086,
3251844-3251972
Length = 454
Score = 87.0 bits (206), Expect = 7e-18
Identities = 42/113 (37%), Positives = 66/113 (58%), Gaps = 2/113 (1%)
Frame = +1
Query: 133 REIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRGTSDLQLERISVYYNEASVATAES 312
REI+ +Q GQCGNQIG +FW+ + EHGI G+ + +R V++ +A
Sbjct: 3 REIITIQVGQCGNQIGMEFWKQLCLEHGIGKDGLLEDFATQGGDRKDVFFYQA------D 56
Query: 313 GGKYVPRAILLDLEPGTMDAVRSGGYGQLFRPDNFVFGQ--SGAGNNWAKGHY 465
Y+PRA+L+DLEP ++ +++ Y L+ +N + GAGNNWA G++
Sbjct: 57 DQHYIPRALLVDLEPRVINGIQNSEYRNLYNHENIFVAEHGGGAGNNWASGYH 109
>03_02_0186 -
6243487-6243799,6243892-6244400,6244495-6244557,
6245482-6245681,6246125-6246519,6246776-6246888
Length = 530
Score = 69.3 bits (162), Expect = 1e-12
Identities = 29/58 (50%), Positives = 41/58 (70%)
Frame = +1
Query: 310 SGGKYVPRAILLDLEPGTMDAVRSGGYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAEL 483
S GK+VPRA+ +DLEP +D V++G Y QLF P+ + + A NN+A+GHYT G E+
Sbjct: 117 SSGKHVPRALFVDLEPTVIDEVKTGPYRQLFHPEQLISYKEDAANNFARGHYTVGREV 174
Score = 42.3 bits (95), Expect = 2e-04
Identities = 17/35 (48%), Positives = 22/35 (62%)
Frame = +1
Query: 130 MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGV 234
MREI+ + GQ G Q+G WE+ EHGI P G+
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGL 35
>09_03_0089 + 12265916-12267232
Length = 438
Score = 33.9 bits (74), Expect = 0.069
Identities = 19/68 (27%), Positives = 29/68 (42%)
Frame = +2
Query: 272 PFIIMRPLLRRRRAVASTCPAPYSSTSNQGPWTPSAPAAXXXXXXXXXXXXXXPAQATTG 451
P ++RP ++ AS P PY+S+S+ P + S P++ A ATT
Sbjct: 212 PPYLLRPFAQKLPTAASPFP-PYTSSSSSTPLSTSTPSSSNLAAANANATTTSTAAATTA 270
Query: 452 LKVTTQKA 475
V A
Sbjct: 271 TSVNPTAA 278
>09_04_0070 +
14308446-14308511,14308844-14309005,14309420-14309473,
14310009-14310073,14310391-14310459,14310590-14310767,
14311085-14311231,14311316-14311432,14311507-14311619,
14311703-14311781,14311892-14312020
Length = 392
Score = 30.7 bits (66), Expect = 0.64
Identities = 15/41 (36%), Positives = 26/41 (63%)
Frame = +2
Query: 266 ESPFIIMRPLLRRRRAVASTCPAPYSSTSNQGPWTPSAPAA 388
E+ F+++ +LR+ + +S+ PA + SNQ P T + PAA
Sbjct: 66 ENSFLVI--MLRQGKGSSSSAPATSKAPSNQAPPTQTVPAA 104
>01_01_0560 +
4117203-4117458,4119359-4119609,4119691-4119860,
4120188-4120385,4120922-4121081
Length = 344
Score = 30.7 bits (66), Expect = 0.64
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +2
Query: 257 NSRESPFIIMRPLLRRRRAVASTCPAPYSSTSNQGP 364
N+ +PF+ RPL+ R +S PAP++S S P
Sbjct: 187 NNASNPFVRQRPLVTRDGPESSVPPAPWASDSATTP 222
>09_04_0325 + 16689613-16689772,16690043-16690329
Length = 148
Score = 30.3 bits (65), Expect = 0.85
Identities = 14/19 (73%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
Frame = +1
Query: 400 FRPDNFVFGQSGAGN-NWA 453
F PDNFVF QS AG NWA
Sbjct: 129 FNPDNFVFHQSVAGGINWA 147
>01_01_0624 -
4696314-4696608,4696704-4697394,4699525-4699540,
4699577-4699630,4699741-4699809
Length = 374
Score = 30.3 bits (65), Expect = 0.85
Identities = 18/33 (54%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = -1
Query: 402 EELPVAAGADGVHGPWFEVE--EYGAGHVLATA 310
+E VAA DG HGPW VE Y AG LA A
Sbjct: 107 QERLVAARPDGSHGPWSYVEGAVYLAGRGLAVA 139
>12_02_0931 +
24512496-24512567,24512705-24512806,24512939-24512984,
24513292-24513355,24513997-24514348,24514497-24514749,
24515069-24515311,24515399-24515518,24515710-24516158
Length = 566
Score = 28.3 bits (60), Expect = 3.4
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Frame = +1
Query: 130 MREIVHLQAGQCGNQIGAKFWEIISEEHGI--DPTG--VYRGTSDLQLERISVYYNEASV 297
MRE V +Q G N +G+ FW E G+ DP V++ + L ++ V Y S
Sbjct: 1 MREAVTVQVGGFANYVGSHFWNFQDELLGLADDPDADPVFKNAA-LDMD---VLYR--SG 54
Query: 298 ATAESGGKYVPRAILLD 348
T + Y PR + +D
Sbjct: 55 ETHQGVATYCPRLVSVD 71
>03_02_0319 -
7421357-7421757,7421768-7421843,7424695-7424796,
7424911-7424982
Length = 216
Score = 27.9 bits (59), Expect = 4.5
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +1
Query: 130 MREIVHLQAGQCGNQIGAKFWEIISEEHGI 219
MRE V +Q G N +G+ FW E G+
Sbjct: 1 MREAVTVQVGGFANYVGSHFWNFQDELLGL 30
>11_06_0061 -
19702893-19703869,19703960-19704098,19704166-19704287,
19704362-19704416,19704508-19704624,19704718-19705413,
19706358-19706393,19707190-19708236
Length = 1062
Score = 27.5 bits (58), Expect = 6.0
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = -1
Query: 399 ELPVAAGADGVHGPWFEVEEYG 334
E+ V ADG HG WFE G
Sbjct: 57 EVEVRVDADGFHGSWFEAVVVG 78
>07_03_0252 - 15846143-15848473
Length = 776
Score = 27.5 bits (58), Expect = 6.0
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Frame = +1
Query: 208 EHGIDPTGVYRGTSDLQLERISVYYNEASVATAESGGKYVPRAILLDLEPGTMD-AVRSG 384
+ GID T G D +ER + + + A E G + A ++DL PG D A
Sbjct: 494 DSGIDFTA---GAHDSGMERATPWTPMSEAALFEQQGPPLAPAAVVDLPPGNADCADHQS 550
Query: 385 GYGQL 399
YG +
Sbjct: 551 SYGDM 555
>07_01_1133 -
10550799-10551137,10552195-10552254,10555693-10557401,
10557534-10557616,10577533-10578074
Length = 910
Score = 27.5 bits (58), Expect = 6.0
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Frame = +1
Query: 166 GNQIGAKFWEIISEEHG--IDPTGVYRGTSDLQLERIS 273
G+Q +KFW+ + EE G ++ + Y +D Q ER++
Sbjct: 540 GSQFTSKFWQKLQEEMGTHLNFSTAYHPQTDGQTERVN 577
>01_01_0562 +
4126368-4128196,4128517-4128715,4128827-4128886,
4129129-4129233,4129987-4130127,4130223-4130285,
4130925-4131152,4131250-4131333,4132000-4132157,
4132252-4132777,4133641-4133700,4133904-4134026,
4134906-4135181,4135282-4135347,4135500-4135631,
4135977-4136798,4137026-4137306,4137564-4137796,
4138022-4138260,4138367-4138558,4138808-4139080,
4139186-4139332
Length = 2078
Score = 27.5 bits (58), Expect = 6.0
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 290 PLLRRRRAVASTCPAPYSSTSNQGPWTPS 376
PLLR + + +S CPAP+ S P P+
Sbjct: 51 PLLRLKVSDSSDCPAPHHPHSQHQPLLPT 79
>11_04_0054 - 12895574-12895840,12906985-12908121,12908274-12908591
Length = 573
Score = 27.1 bits (57), Expect = 7.9
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Frame = +1
Query: 166 GNQIGAKFWEIISEEHG--IDPTGVYRGTSDLQLERIS 273
G+Q +KFW+ + EE G ++ + Y +D Q ER++
Sbjct: 331 GSQFTSKFWQKLQEELGTRLNFSTAYHPQTDGQTERVN 368
>06_03_0964 - 26372924-26372990,26373172-26373686
Length = 193
Score = 27.1 bits (57), Expect = 7.9
Identities = 18/50 (36%), Positives = 28/50 (56%)
Frame = +1
Query: 292 SVATAESGGKYVPRAILLDLEPGTMDAVRSGGYGQLFRPDNFVFGQSGAG 441
++ATA GG P+AI+L +P + A R+ G++ R +SGAG
Sbjct: 52 AMATARGGGARWPKAIVLQQQPASTTA-RARRCGRIVRRCCGRKTRSGAG 100
>01_06_0549 +
30149016-30149761,30149922-30150088,30150236-30150320,
30150499-30150658
Length = 385
Score = 27.1 bits (57), Expect = 7.9
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = +2
Query: 218 STLPAFTGAQAIYNSRESPFIIMRPLLRRRRAVASTCPAPYSSTSNQGPWTPSAP 382
++L AF A A +++ SP P R A +T PAP ++ + G W AP
Sbjct: 117 ASLDAFLKANACFSTPSSP----AP--SRSSATTTTRPAPTTTATADGYWNDFAP 165
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.315 0.135 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,538,301
Number of Sequences: 37544
Number of extensions: 240182
Number of successful extensions: 952
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 939
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.5 bits)
- SilkBase 1999-2023 -