Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_D21
(483 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 207 3e-54
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 207 3e-54
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 205 1e-53
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 205 1e-53
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 204 3e-53
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 203 4e-53
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 203 6e-53
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 202 1e-52
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 200 4e-52
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne... 104 4e-23
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne... 104 4e-23
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide... 103 8e-23
At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide... 98 3e-21
At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly ide... 98 3e-21
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id... 97 5e-21
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne... 97 5e-21
At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin... 92 2e-19
At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin... 92 2e-19
At4g37190.1 68417.m05265 expressed protein 34 0.044
At2g32810.1 68415.m04016 beta-galactosidase, putative / lactase,... 29 1.2
At4g28750.1 68417.m04111 photosystem I reaction center subunit I... 29 1.6
At3g07470.1 68416.m00891 expressed protein contains Pfam profile... 29 1.6
At3g10900.1 68416.m01312 (1-4)-beta-mannan endohydrolase, putati... 29 2.2
At2g22720.3 68415.m02692 expressed protein 27 8.8
At2g22720.2 68415.m02691 expressed protein 27 8.8
At2g22720.1 68415.m02693 expressed protein 27 8.8
At1g75230.2 68414.m08739 HhH-GPD base excision DNA repair family... 27 8.8
At1g75230.1 68414.m08740 HhH-GPD base excision DNA repair family... 27 8.8
>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
thaliana}
Length = 449
Score = 207 bits (506), Expect = 3e-54
Identities = 92/118 (77%), Positives = 105/118 (88%)
Frame = +1
Query: 130 MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRGTSDLQLERISVYYNEASVATAE 309
MREI+H+Q GQCGNQIG+KFWE++ +EHGIDPTG Y G SDLQLER++VYYNEAS
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVGNSDLQLERVNVYYNEASC---- 56
Query: 310 SGGKYVPRAILLDLEPGTMDAVRSGGYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAEL 483
G+YVPRAIL+DLEPGTMD+VR+G YGQ+FRPDNFVFGQSGAGNNWAKGHYTEGAEL
Sbjct: 57 --GRYVPRAILMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL 112
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 207 bits (505), Expect = 3e-54
Identities = 93/119 (78%), Positives = 106/119 (89%), Gaps = 1/119 (0%)
Frame = +1
Query: 130 MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRGTS-DLQLERISVYYNEASVATA 306
MREI+H+Q GQCGNQIG+KFWE+I +EHG+DPTG Y G S DLQLERI+VYYNEAS
Sbjct: 1 MREILHVQGGQCGNQIGSKFWEVICDEHGVDPTGRYNGDSADLQLERINVYYNEAS---- 56
Query: 307 ESGGKYVPRAILLDLEPGTMDAVRSGGYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAEL 483
GG+YVPRA+L+DLEPGTMD++RSG YGQ+FRPDNFVFGQSGAGNNWAKGHYTEGAEL
Sbjct: 57 --GGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL 113
>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 205 bits (500), Expect = 1e-53
Identities = 92/118 (77%), Positives = 103/118 (87%)
Frame = +1
Query: 130 MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRGTSDLQLERISVYYNEASVATAE 309
MREI+H+Q GQCGNQIGAKFWE++ EHGIDPTG Y G SDLQLERI+VYYNEAS
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDLQLERINVYYNEASC---- 56
Query: 310 SGGKYVPRAILLDLEPGTMDAVRSGGYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAEL 483
G++VPRA+L+DLEPGTMD++RSG YGQ FRPDNFVFGQSGAGNNWAKGHYTEGAEL
Sbjct: 57 --GRFVPRAVLMDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNNWAKGHYTEGAEL 112
>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 205 bits (500), Expect = 1e-53
Identities = 92/118 (77%), Positives = 103/118 (87%)
Frame = +1
Query: 130 MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRGTSDLQLERISVYYNEASVATAE 309
MREI+H+Q GQCGNQIGAKFWE++ EHGIDPTG Y G SDLQLERI+VYYNEAS
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDLQLERINVYYNEASC---- 56
Query: 310 SGGKYVPRAILLDLEPGTMDAVRSGGYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAEL 483
G++VPRA+L+DLEPGTMD++RSG YGQ FRPDNFVFGQSGAGNNWAKGHYTEGAEL
Sbjct: 57 --GRFVPRAVLMDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNNWAKGHYTEGAEL 112
>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
thaliana}
Length = 449
Score = 204 bits (497), Expect = 3e-53
Identities = 92/119 (77%), Positives = 106/119 (89%), Gaps = 1/119 (0%)
Frame = +1
Query: 130 MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRG-TSDLQLERISVYYNEASVATA 306
MREI+H+Q GQCGNQIG+KFWE+I +EHGID TG Y G T+DLQLERI+VYYNEAS
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVICDEHGIDSTGRYSGDTADLQLERINVYYNEAS---- 56
Query: 307 ESGGKYVPRAILLDLEPGTMDAVRSGGYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAEL 483
GG+YVPRA+L+DLEPGTMD++RSG +GQ+FRPDNFVFGQSGAGNNWAKGHYTEGAEL
Sbjct: 57 --GGRYVPRAVLMDLEPGTMDSIRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL 113
>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
Length = 449
Score = 203 bits (496), Expect = 4e-53
Identities = 90/118 (76%), Positives = 104/118 (88%)
Frame = +1
Query: 130 MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRGTSDLQLERISVYYNEASVATAE 309
MREI+H+Q GQCGNQIGAKFWE++ EHGID TG Y+G +DLQLER++VYYNEAS
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYQGENDLQLERVNVYYNEASC---- 56
Query: 310 SGGKYVPRAILLDLEPGTMDAVRSGGYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAEL 483
G++VPRA+L+DLEPGTMD+VRSG YGQ+FRPDNFVFGQSGAGNNWAKGHYTEGAEL
Sbjct: 57 --GRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL 112
>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
thaliana}
Length = 444
Score = 203 bits (495), Expect = 6e-53
Identities = 92/118 (77%), Positives = 103/118 (87%)
Frame = +1
Query: 130 MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRGTSDLQLERISVYYNEASVATAE 309
MREI+H+Q GQCGNQIGAKFWE+I +EHGID TG Y G S LQLERI VY+NEAS
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGQYVGDSPLQLERIDVYFNEAS----- 55
Query: 310 SGGKYVPRAILLDLEPGTMDAVRSGGYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAEL 483
GGKYVPRA+L+DLEPGTMD++RSG +GQ+FRPDNFVFGQSGAGNNWAKGHYTEGAEL
Sbjct: 56 -GGKYVPRAVLMDLEPGTMDSLRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL 112
>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
thaliana}
Length = 449
Score = 202 bits (492), Expect = 1e-52
Identities = 90/118 (76%), Positives = 104/118 (88%)
Frame = +1
Query: 130 MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRGTSDLQLERISVYYNEASVATAE 309
MREI+H+Q GQCGNQIG+KFWE+++ EHGID TG Y G S+LQLER++VYYNEAS
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVVNLEHGIDQTGRYVGDSELQLERVNVYYNEASC---- 56
Query: 310 SGGKYVPRAILLDLEPGTMDAVRSGGYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAEL 483
G+YVPRA+L+DLEPGTMD+VRSG YGQ+FRPDNFVFGQSGAGNNWAKGHYTEGAEL
Sbjct: 57 --GRYVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL 112
>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
thaliana}
Length = 444
Score = 200 bits (488), Expect = 4e-52
Identities = 91/118 (77%), Positives = 103/118 (87%)
Frame = +1
Query: 130 MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRGTSDLQLERISVYYNEASVATAE 309
MREI+H+Q GQCGNQIGAKFWE+I EHGID TG G +DLQLERI+VY+NEAS
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICGEHGIDQTGQSCGDTDLQLERINVYFNEAS----- 55
Query: 310 SGGKYVPRAILLDLEPGTMDAVRSGGYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAEL 483
GGKYVPRA+L+DLEPGTMD++RSG +GQ+FRPDNFVFGQSGAGNNWAKGHYTEGAEL
Sbjct: 56 -GGKYVPRAVLMDLEPGTMDSLRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL 112
>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 104 bits (249), Expect = 4e-23
Identities = 52/119 (43%), Positives = 74/119 (62%), Gaps = 1/119 (0%)
Frame = +1
Query: 130 MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRGTSDLQLERISVYYNEASVATAE 309
MREI+ + GQ G Q+G WE+ EHGI P G+ SD + V ++ + +E
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGMM--PSDTT---VGVAHDAFNTFFSE 55
Query: 310 SG-GKYVPRAILLDLEPGTMDAVRSGGYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAEL 483
+G GK+VPRA+ +DLEP +D VR+G Y QLF P+ + G+ A NN+A+GHYT G E+
Sbjct: 56 TGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGKEI 114
>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 104 bits (249), Expect = 4e-23
Identities = 52/119 (43%), Positives = 74/119 (62%), Gaps = 1/119 (0%)
Frame = +1
Query: 130 MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRGTSDLQLERISVYYNEASVATAE 309
MREI+ + GQ G Q+G WE+ EHGI P G+ SD + V ++ + +E
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGMM--PSDTT---VGVAHDAFNTFFSE 55
Query: 310 SG-GKYVPRAILLDLEPGTMDAVRSGGYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAEL 483
+G GK+VPRA+ +DLEP +D VR+G Y QLF P+ + G+ A NN+A+GHYT G E+
Sbjct: 56 TGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGKEI 114
>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
identical to SP|P11139 Tubulin alpha-1 chain
{Arabidopsis thaliana}
Length = 450
Score = 103 bits (246), Expect = 8e-23
Identities = 50/120 (41%), Positives = 71/120 (59%), Gaps = 2/120 (1%)
Frame = +1
Query: 130 MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRGTSDLQL--ERISVYYNEASVAT 303
MREI+ + GQ G Q+G WE+ EHGI P G S + + + +++E S
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDSTVGACHDAFNTFFSETS--- 57
Query: 304 AESGGKYVPRAILLDLEPGTMDAVRSGGYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAEL 483
G++VPRA+ LDLEP +D VR+G Y QLF P+ + G+ A NN+A+GHYT G E+
Sbjct: 58 ---SGQHVPRAVFLDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGREI 114
>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 450
Score = 97.9 bits (233), Expect = 3e-21
Identities = 48/120 (40%), Positives = 69/120 (57%), Gaps = 2/120 (1%)
Frame = +1
Query: 130 MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRGTSDLQL--ERISVYYNEASVAT 303
MRE + + GQ G Q+G WE+ EHGI P G G + + + +++E
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDKTVGGGDDAFNTFFSETGA-- 58
Query: 304 AESGGKYVPRAILLDLEPGTMDAVRSGGYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAEL 483
GK+VPRA+ +DLEP +D VR+G Y QLF P+ + G+ A NN+A+GHYT G E+
Sbjct: 59 ----GKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEI 114
>At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 427
Score = 97.9 bits (233), Expect = 3e-21
Identities = 48/120 (40%), Positives = 69/120 (57%), Gaps = 2/120 (1%)
Frame = +1
Query: 130 MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRGTSDLQL--ERISVYYNEASVAT 303
MRE + + GQ G Q+G WE+ EHGI P G G + + + +++E
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDKTVGGGDDAFNTFFSETGA-- 58
Query: 304 AESGGKYVPRAILLDLEPGTMDAVRSGGYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAEL 483
GK+VPRA+ +DLEP +D VR+G Y QLF P+ + G+ A NN+A+GHYT G E+
Sbjct: 59 ----GKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEI 114
>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
identical to tubulin alpha-2/alpha-4 chain SP|P29510
GB:P29510 from [Arabidopsis thaliana]
Length = 450
Score = 97.1 bits (231), Expect = 5e-21
Identities = 50/118 (42%), Positives = 68/118 (57%)
Frame = +1
Query: 130 MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRGTSDLQLERISVYYNEASVATAE 309
MRE + + GQ G Q+G WE+ EHGI P G + SD + +N T
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDG--QMPSDKTVGGGDDAFNTFFSETG- 57
Query: 310 SGGKYVPRAILLDLEPGTMDAVRSGGYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAEL 483
GK+VPRA+ +DLEP +D VR+G Y QLF P+ + G+ A NN+A+GHYT G E+
Sbjct: 58 -AGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEI 114
>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
chain from [Arabidopsis thaliana]
Length = 450
Score = 97.1 bits (231), Expect = 5e-21
Identities = 50/118 (42%), Positives = 68/118 (57%)
Frame = +1
Query: 130 MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRGTSDLQLERISVYYNEASVATAE 309
MRE + + GQ G Q+G WE+ EHGI P G + SD + +N T
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDG--QMPSDKTVGGGDDAFNTFFSETG- 57
Query: 310 SGGKYVPRAILLDLEPGTMDAVRSGGYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAEL 483
GK+VPRA+ +DLEP +D VR+G Y QLF P+ + G+ A NN+A+GHYT G E+
Sbjct: 58 -AGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEI 114
>At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin
(TUBG2) identical to SP|P38558 Tubulin gamma-2 chain
(Gamma-2 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 92.3 bits (219), Expect = 2e-19
Identities = 47/119 (39%), Positives = 68/119 (57%), Gaps = 3/119 (2%)
Frame = +1
Query: 133 REIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRGTSDLQLERISVYYNEASVATAES 312
REI+ LQ GQCGNQIG +FW+ + EHGI G+ + +R V++ +A
Sbjct: 3 REIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGGDRKDVFFYQA------D 56
Query: 313 GGKYVPRAILLDLEPGTMDAVRSGGYGQLFRPDNFVFGQ--SGAGNNWAKG-HYTEGAE 480
Y+PRA+L+DLEP ++ +++G Y L+ +N GAGNNWA G H +G E
Sbjct: 57 DQHYIPRALLIDLEPRVINGIQNGEYRNLYNHENIFLSDHGGGAGNNWASGYHQGKGVE 115
>At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin
(TUBG1) identical to SP|P38557 Tubulin gamma-1 chain
(Gamma-1 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 92.3 bits (219), Expect = 2e-19
Identities = 47/119 (39%), Positives = 68/119 (57%), Gaps = 3/119 (2%)
Frame = +1
Query: 133 REIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRGTSDLQLERISVYYNEASVATAES 312
REI+ LQ GQCGNQIG +FW+ + EHGI G+ + +R V++ +A
Sbjct: 3 REIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGGDRKDVFFYQA------D 56
Query: 313 GGKYVPRAILLDLEPGTMDAVRSGGYGQLFRPDNFVFGQ--SGAGNNWAKG-HYTEGAE 480
Y+PRA+L+DLEP ++ +++G Y L+ +N GAGNNWA G H +G E
Sbjct: 57 DQHYIPRALLIDLEPRVINGIQNGDYRNLYNHENIFVADHGGGAGNNWASGYHQGKGVE 115
>At4g37190.1 68417.m05265 expressed protein
Length = 562
Score = 34.3 bits (75), Expect = 0.044
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 4/90 (4%)
Frame = +1
Query: 130 MREIVHLQAGQCGNQIGAKFWEIISEEHGI--DPTG--VYRGTSDLQLERISVYYNEASV 297
MREIV +Q G+ N +G+ FW E G+ DP ++R +L ++ V Y S
Sbjct: 1 MREIVTIQVGEFANFVGSHFWNFQDELLGLASDPESDPIFR-NHNLDMD---VLYR--SG 54
Query: 298 ATAESGGKYVPRAILLDLEPGTMDAVRSGG 387
T + Y PR + ++L+ G + + S G
Sbjct: 55 ETQQGVATYTPRLVSVNLK-GALGTMSSRG 83
>At2g32810.1 68415.m04016 beta-galactosidase, putative / lactase,
putative similar to beta-galactosidase GI:7939617 from
[Lycopersicon esculentum]
Length = 887
Score = 29.5 bits (63), Expect = 1.2
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = +1
Query: 151 QAGQCGNQIGAKFWEIISEEHGIDPTGVYRG 243
QA G IG ++W IIS++ G D T YRG
Sbjct: 678 QAWVNGQHIG-RYWNIISQKDGCDRTCDYRG 707
>At4g28750.1 68417.m04111 photosystem I reaction center subunit IV,
chloroplast, putative / PSI-E, putative (PSAE1)
identical to SP|Q9S831; similar to SP|P12354 Photosystem
I reaction center subunit IV, chloroplast precursor
(PSI-E) {Spinacia oleracea}; contains Pfam profile
PF02427: Photosystem I reaction centre subunit IV / PsaE
Length = 143
Score = 29.1 bits (62), Expect = 1.6
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Frame = +2
Query: 209 STASTLPA-FTGAQAIYNSRES-PFIIMRPLLRRRRAVASTCPAPYSSTSNQGPWTPSAP 382
ST LPA T +SR S F+ MR R A+ PAP SS+S P +AP
Sbjct: 7 STVFVLPANVTSVAGASSSRSSVSFLPMRNAGSRLVVRAAEDPAPASSSSKDSPAAAAAP 66
>At3g07470.1 68416.m00891 expressed protein contains Pfam profile
PF04398: Protein of unknown function, DUF538
Length = 169
Score = 29.1 bits (62), Expect = 1.6
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +1
Query: 214 GIDPTGVYRGTSDLQLERISVYYNEASVATAES 312
GI P GV T D++ R SVY N+A A E+
Sbjct: 43 GIFPKGVREFTFDVETGRFSVYLNQACEAKYET 75
>At3g10900.1 68416.m01312 (1-4)-beta-mannan endohydrolase, putative
similar to (1-4)-beta-mannan endohydrolase [Coffea
arabica] GI:10178872, (1-4)-beta-mannan endohydrolase
GB:AAB87859 [Lycopersicon esculentum]; contains Pfam
profile PF00150: Cellulase (glycosyl hydrolase family 5)
Length = 408
Score = 28.7 bits (61), Expect = 2.2
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +1
Query: 136 EIVHLQAGQCGNQIGAKFWEIISE 207
+I++ A + G+ GA FWE+ISE
Sbjct: 346 DIIYASAQKGGSAAGALFWEVISE 369
>At2g22720.3 68415.m02692 expressed protein
Length = 569
Score = 26.6 bits (56), Expect = 8.8
Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Frame = +2
Query: 149 SRPGSAVTRLVQ---SSGR*YPKSTASTLPAFTGAQAIYNS--RESPFIIMRP 292
SRP SA +++ Q SSG P S+ S PA +G+Q +S R++P MRP
Sbjct: 292 SRPASAGSQMQQRPASSGSQRPASSGSQRPASSGSQRPGSSTNRQAP---MRP 341
>At2g22720.2 68415.m02691 expressed protein
Length = 672
Score = 26.6 bits (56), Expect = 8.8
Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Frame = +2
Query: 149 SRPGSAVTRLVQ---SSGR*YPKSTASTLPAFTGAQAIYNS--RESPFIIMRP 292
SRP SA +++ Q SSG P S+ S PA +G+Q +S R++P MRP
Sbjct: 395 SRPASAGSQMQQRPASSGSQRPASSGSQRPASSGSQRPGSSTNRQAP---MRP 444
>At2g22720.1 68415.m02693 expressed protein
Length = 340
Score = 26.6 bits (56), Expect = 8.8
Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Frame = +2
Query: 149 SRPGSAVTRLVQ---SSGR*YPKSTASTLPAFTGAQAIYNS--RESPFIIMRP 292
SRP SA +++ Q SSG P S+ S PA +G+Q +S R++P MRP
Sbjct: 63 SRPASAGSQMQQRPASSGSQRPASSGSQRPASSGSQRPGSSTNRQAP---MRP 112
>At1g75230.2 68414.m08739 HhH-GPD base excision DNA repair family
protein contains Pfam domain PF00730: HhH-GPD
superfamily base excision DNA repair protein
Length = 394
Score = 26.6 bits (56), Expect = 8.8
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +1
Query: 130 MREIVHLQ-AGQCGNQIGAKFWEIISEEHGIDPTGVYRGTSDLQLERISVYYNEAS 294
+R I++ Q A + GN I +F + E+G+ P V T QL +I V +AS
Sbjct: 172 IRSILYQQLAAKAGNSIYTRFVALCGGENGVVPENVLPLTPQ-QLRQIGVSGRKAS 226
>At1g75230.1 68414.m08740 HhH-GPD base excision DNA repair family
protein contains Pfam domain PF00730: HhH-GPD
superfamily base excision DNA repair protein
Length = 391
Score = 26.6 bits (56), Expect = 8.8
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +1
Query: 130 MREIVHLQ-AGQCGNQIGAKFWEIISEEHGIDPTGVYRGTSDLQLERISVYYNEAS 294
+R I++ Q A + GN I +F + E+G+ P V T QL +I V +AS
Sbjct: 172 IRSILYQQLAAKAGNSIYTRFVALCGGENGVVPENVLPLTPQ-QLRQIGVSGRKAS 226
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.315 0.135 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,580,877
Number of Sequences: 28952
Number of extensions: 164043
Number of successful extensions: 598
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 576
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 829097472
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.5 bits)
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