Samia BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_D20
         (460 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY957503-1|AAY41942.1|  596|Anopheles gambiae vasa-like protein ...   125   7e-31
AJ297930-1|CAC35450.1|  104|Anopheles gambiae hypothetical prote...    25   1.7  
AY645022-1|AAT92558.1|  165|Anopheles gambiae hairy protein.           22   9.0  
AB090818-2|BAC57912.1|  988|Anopheles gambiae reverse transcript...    22   9.0  

>AY957503-1|AAY41942.1|  596|Anopheles gambiae vasa-like protein
           protein.
          Length = 596

 Score =  125 bits (302), Expect = 7e-31
 Identities = 62/149 (41%), Positives = 93/149 (62%), Gaps = 1/149 (0%)
 Frame = +1

Query: 13  NILQIVDVCQEHEKENKLNVLLQEIGQNQDPGAKTIIFVETKRKAENITRNIRRYGWPAV 192
           ++ Q + + ++ +K  KL    +EI    +P   T++FVETKR A+ +   +    +P  
Sbjct: 397 DVEQTIHLVEKFKKRKKL----EEILNGGNPKG-TLVFVETKRNADYLASLMSETQFPTT 451

Query: 193 CMHGDKTQQERDEVLYQFKEGRSSILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRI 372
            +HGD+ Q+ER+  LY FK GR  +L+AT VAARGLD+  + +V+N+D P S +DY+HRI
Sbjct: 452 SIHGDRLQREREMALYDFKSGRMDVLIATSVAARGLDIKNVNHVVNYDLPKSIDDYVHRI 511

Query: 373 GRTGRSKAKGTSYAFFSPSNSR-QARDLV 456
           GRTGR   KG + +F+ P   R  A DLV
Sbjct: 512 GRTGRVGNKGRATSFYDPEADRAMASDLV 540


>AJ297930-1|CAC35450.1|  104|Anopheles gambiae hypothetical protein
           protein.
          Length = 104

 Score = 24.6 bits (51), Expect = 1.7
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -1

Query: 262 WNDPL*IGIILHPFLAVFCHRACTQ 188
           WN     G++L   LA  CH AC +
Sbjct: 2   WNSITASGLMLVAALATLCHGACDE 26


>AY645022-1|AAT92558.1|  165|Anopheles gambiae hairy protein.
          Length = 165

 Score = 22.2 bits (45), Expect = 9.0
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +1

Query: 343 NSSEDYIHRIGRTGRSKAKGTSYAFFSPSNS 435
           NSS  Y+H+  ++  S +  +S +  S S+S
Sbjct: 97  NSSTGYLHQHQQSSSSSSSSSSSSMSSSSSS 127


>AB090818-2|BAC57912.1|  988|Anopheles gambiae reverse transcriptase
           protein.
          Length = 988

 Score = 22.2 bits (45), Expect = 9.0
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 311 PSTSRPLAATSVATSILER 255
           PS+ RP+   SV   ILER
Sbjct: 487 PSSYRPICLLSVLGKILER 505


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.317    0.133    0.384 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 502,581
Number of Sequences: 2352
Number of extensions: 9526
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 563,979
effective HSP length: 59
effective length of database: 425,211
effective search space used: 39544623
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)