Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_D20
         (460 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.      121   4e-30
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   1.2  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   1.6  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    22   3.7  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   6.4  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   6.4  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   8.5  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score =  121 bits (291), Expect = 4e-30
 Identities = 63/137 (45%), Positives = 87/137 (63%), Gaps = 4/137 (2%)
 Frame = +1

Query: 58  NKLNVLLQEIGQNQ-DPGAK--TIIFVETKRKAENITRNIRRYGWPAVCMHGDKTQQERD 228
           NK   LL+EI + + D G    T++FVE K+KA+ I   +    +P   +HGD+ Q++R+
Sbjct: 432 NKKKDLLKEILERENDSGTLGGTLVFVEMKKKADFIAVFLSENNYPTTSIHGDRLQRQRE 491

Query: 229 EVLYQFKEGRSSILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKAKGTS 408
           E L  FK GR SILVAT VAARGLD+  + +VIN+D P   ++Y+HRIGRTGR   +G +
Sbjct: 492 EALADFKSGRMSILVATAVAARGLDIKNVSHVINYDLPKGIDEYVHRIGRTGRVGNRGRA 551

Query: 409 YAFFSPSNSRQAR-DLV 456
            +FF P      R DLV
Sbjct: 552 TSFFDPEEDAPLRGDLV 568


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 16/64 (25%), Positives = 30/64 (46%)
 Frame = -3

Query: 314  IPSTSRPLAATSVATSILERPSLNWYNTSSLSCCVLSPCMHTAGHPYRLIFLVMFSAFLL 135
            +P TS P ++TS+ +  +E+  +N   T   +        +  G P   + +V  SA  L
Sbjct: 854  VPITSLPASSTSINSITVEKDVINDVKTQITTNTPAKKATNIGGKP---VAVVKSSAQSL 910

Query: 134  VSTN 123
            + +N
Sbjct: 911  LQSN 914


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +1

Query: 43  EHEKENKLNVLLQEIGQN 96
           ++  ENKLN  +++IG N
Sbjct: 213 DYNLENKLNYFIEDIGLN 230


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +1

Query: 130 ETKRKAENITRNIRRYGWPAVCMHGDKTQQERDE 231
           E ++K+    R  R+YG  +     D+T++ER +
Sbjct: 277 EREQKSYKNEREYRKYGETSKERSRDRTERERSK 310


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.0 bits (42), Expect = 6.4
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 218 KKGMKYYTNLKRVVPVYL*QLMLLPEV 298
           KK M  Y   ++ +PVY    ++LP V
Sbjct: 439 KKVMNLYQQYQQSLPVYQYNDLILPGV 465


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.0 bits (42), Expect = 6.4
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = +2

Query: 380 QEDPKLKELHMHSLAHP 430
           Q  P  ++LH H   HP
Sbjct: 806 QSQPPHQQLHHHQSTHP 822


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 372 NSMNVILRGIWIIKINHIFDSI 307
           NS+ VIL  +   KI H FD +
Sbjct: 229 NSLMVILPDLVGKKITHFFDLV 250


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.317    0.133    0.384 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,540
Number of Sequences: 438
Number of extensions: 2893
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12189771
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)