Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_D20
(460 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 173 5e-44
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 173 6e-44
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 155 2e-38
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 155 2e-38
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 155 2e-38
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 154 3e-38
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 148 2e-36
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 145 1e-35
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 145 1e-35
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 141 2e-34
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 138 1e-33
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 138 2e-33
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 117 3e-27
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 109 1e-24
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 107 3e-24
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 107 5e-24
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 107 5e-24
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 105 1e-23
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 105 1e-23
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 105 1e-23
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 105 2e-23
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 102 1e-22
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 101 2e-22
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 101 2e-22
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 101 3e-22
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 100 4e-22
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 99 7e-22
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 100 9e-22
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 97 7e-21
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 96 1e-20
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 93 1e-19
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 89 1e-18
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 89 1e-18
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 89 2e-18
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 87 5e-18
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 87 5e-18
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 87 5e-18
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 87 7e-18
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 85 2e-17
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 83 7e-17
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 83 7e-17
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 83 7e-17
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 81 4e-16
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 81 4e-16
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 81 5e-16
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 79 1e-15
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 76 1e-14
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 75 3e-14
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 75 3e-14
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 74 4e-14
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 74 5e-14
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 73 7e-14
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 73 7e-14
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 73 9e-14
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 71 3e-13
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 70 9e-13
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 69 2e-12
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 68 3e-12
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 67 5e-12
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 66 1e-11
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 64 3e-11
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 62 1e-10
At5g19210.1 68418.m02288 DEAD/DEAH box helicase, putative EUKARY... 62 1e-10
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 56 1e-08
At5g27680.1 68418.m03319 DEAD/DEAH box helicase, putative simila... 49 1e-06
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 49 1e-06
At1g27880.1 68414.m03416 ATP-dependent DNA helicase, putative si... 49 1e-06
At4g35740.2 68417.m05073 DNA helicase (RECQl3) identical to DNA ... 47 5e-06
At4g35740.1 68417.m05072 DNA helicase (RECQl3) identical to DNA ... 47 5e-06
At5g20320.1 68418.m02418 DEAD/DEAH box helicase, putative simila... 45 2e-05
At5g22750.1 68418.m02657 SNF2 domain-containing protein / helica... 45 3e-05
At1g35530.1 68414.m04411 DEAD/DEAH box helicase, putative low si... 45 3e-05
At3g02060.1 68416.m00169 DEAD/DEAH box helicase, putative simila... 43 9e-05
At3g03300.1 68416.m00327 DEAD/DEAH box helicase carpel factory-r... 42 2e-04
At2g01440.1 68415.m00067 ATP-dependent DNA helicase, putative 42 2e-04
At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /... 40 8e-04
At5g43530.1 68418.m05322 SNF2 domain-containing protein / helica... 38 0.002
At1g32490.1 68414.m04009 RNA helicase, putative similar to ATP-d... 36 0.013
At5g10370.1 68418.m01203 helicase domain-containing protein / IB... 36 0.017
At4g01020.1 68417.m00137 helicase domain-containing protein / IB... 36 0.017
At3g05740.1 68416.m00644 DNA helicase (RECQI1) identical to DNA ... 36 0.017
At1g12700.1 68414.m01473 helicase domain-containing protein / pe... 35 0.023
At2g35340.1 68415.m04333 RNA helicase, putative similar to ATP-d... 34 0.040
At3g12810.1 68416.m01598 SNF2 domain-containing protein / helica... 33 0.093
At4g16680.1 68417.m02519 RNA helicase, putative similar to SP|Q1... 32 0.21
At5g13010.1 68418.m01491 RNA helicase, putative similar to DEAH-... 31 0.28
At3g26560.1 68416.m03315 ATP-dependent RNA helicase, putative si... 31 0.28
At5g22980.1 68418.m02686 serine carboxypeptidase III, putative s... 31 0.37
At3g43920.1 68416.m04701 ribonuclease III family protein similar... 31 0.37
At1g26370.1 68414.m03217 RNA helicase, putative similar to SP|Q1... 31 0.37
At1g63500.1 68414.m07180 protein kinase-related low similarity t... 30 0.86
At5g44240.1 68418.m05412 haloacid dehalogenase-like hydrolase fa... 29 1.1
At5g24500.1 68418.m02887 expressed protein 29 1.1
At5g08110.1 68418.m00946 DEAD/DEAH box helicase, putative severa... 29 2.0
At5g41260.1 68418.m05015 protein kinase family protein contains ... 28 2.6
At4g35230.1 68417.m05007 protein kinase family protein contains ... 28 3.5
At1g58050.1 68414.m06579 helicase domain-containing protein cont... 28 3.5
At1g33390.1 68414.m04133 helicase domain-containing protein simi... 28 3.5
At5g59010.1 68418.m07392 protein kinase-related low similarity t... 27 4.6
At4g01800.1 68417.m00237 preprotein translocase secA subunit, pu... 27 4.6
At1g50990.1 68414.m05732 protein kinase-related low similarity t... 27 4.6
At1g27900.1 68414.m03419 RNA helicase, putative similar to SP|Q1... 27 4.6
At5g17010.1 68418.m01992 sugar transporter family protein simila... 27 6.1
At3g62310.1 68416.m07000 RNA helicase, putative similar to SP|P5... 27 6.1
At3g19020.1 68416.m02415 leucine-rich repeat family protein / ex... 27 6.1
At2g47250.1 68415.m05900 RNA helicase, putative similar to SP|P5... 27 6.1
At2g33320.1 68415.m04084 C2 domain-containing protein low simila... 27 6.1
At3g21300.1 68416.m02691 RNA methyltransferase family protein co... 27 8.1
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 173 bits (421), Expect = 5e-44
Identities = 81/148 (54%), Positives = 112/148 (75%)
Frame = +1
Query: 16 ILQIVDVCQEHEKENKLNVLLQEIGQNQDPGAKTIIFVETKRKAENITRNIRRYGWPAVC 195
I QIVDV E +K NKL LL++I G++ ++F++TK+ + ITR +R GWPA+
Sbjct: 318 IRQIVDVISESQKYNKLVKLLEDIMD----GSRILVFLDTKKGCDQITRQLRMDGWPALS 373
Query: 196 MHGDKTQQERDEVLYQFKEGRSSILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIG 375
+HGDK+Q ERD VL +F+ G+S I+ ATDVAARGLDV +KYVIN+D+P S EDY+HRIG
Sbjct: 374 IHGDKSQAERDWVLSEFRSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIG 433
Query: 376 RTGRSKAKGTSYAFFSPSNSRQARDLVS 459
RTGR+ AKGT+Y FF+ +N+R A++L +
Sbjct: 434 RTGRAGAKGTAYTFFTVANARFAKELTN 461
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 173 bits (420), Expect = 6e-44
Identities = 81/150 (54%), Positives = 111/150 (74%)
Frame = +1
Query: 7 DHNILQIVDVCQEHEKENKLNVLLQEIGQNQDPGAKTIIFVETKRKAENITRNIRRYGWP 186
+ +I Q++++ EK N+L LL+++ G+K +IFVETKR + +TR +R GWP
Sbjct: 381 NQSINQVIEIVPTPEKYNRLLTLLKQLMD----GSKILIFVETKRGCDQVTRQLRMDGWP 436
Query: 187 AVCMHGDKTQQERDEVLYQFKEGRSSILVATDVAARGLDVDGIKYVINFDYPNSSEDYIH 366
A+ +HGDKTQ ERD VL +FK GRS I+ ATDVAARGLDV IK V+N+D+PN+ EDYIH
Sbjct: 437 ALAIHGDKTQSERDRVLAEFKSGRSPIMTATDVAARGLDVKDIKCVVNYDFPNTLEDYIH 496
Query: 367 RIGRTGRSKAKGTSYAFFSPSNSRQARDLV 456
RIGRTGR+ AKG ++ FF+ N++ AR+LV
Sbjct: 497 RIGRTGRAGAKGMAFTFFTHDNAKFARELV 526
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 155 bits (375), Expect = 2e-38
Identities = 74/148 (50%), Positives = 104/148 (70%)
Frame = +1
Query: 13 NILQIVDVCQEHEKENKLNVLLQEIGQNQDPGAKTIIFVETKRKAENITRNIRRYGWPAV 192
+I Q ++V EK+ +L +L+ +Q+PG+K IIF TKR + +TRN+ R + A
Sbjct: 376 SITQHIEVVAPMEKQRRLEQILR----SQEPGSKVIIFCSTKRMCDQLTRNLTRQ-FGAA 430
Query: 193 CMHGDKTQQERDEVLYQFKEGRSSILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRI 372
+HGDK+Q ERD VL QF+ GR+ +LVATDVAARGLDV I+ V+N+D+PN EDY+HRI
Sbjct: 431 AIHGDKSQPERDNVLNQFRSGRTPVLVATDVAARGLDVKDIRAVVNYDFPNGVEDYVHRI 490
Query: 373 GRTGRSKAKGTSYAFFSPSNSRQARDLV 456
GRTGR+ A G ++ FF +S+ A DL+
Sbjct: 491 GRTGRAGATGQAFTFFGDQDSKHASDLI 518
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 155 bits (375), Expect = 2e-38
Identities = 74/148 (50%), Positives = 104/148 (70%)
Frame = +1
Query: 13 NILQIVDVCQEHEKENKLNVLLQEIGQNQDPGAKTIIFVETKRKAENITRNIRRYGWPAV 192
+I Q ++V EK+ +L +L+ +Q+PG+K IIF TKR + +TRN+ R + A
Sbjct: 376 SITQHIEVVAPMEKQRRLEQILR----SQEPGSKVIIFCSTKRMCDQLTRNLTRQ-FGAA 430
Query: 193 CMHGDKTQQERDEVLYQFKEGRSSILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRI 372
+HGDK+Q ERD VL QF+ GR+ +LVATDVAARGLDV I+ V+N+D+PN EDY+HRI
Sbjct: 431 AIHGDKSQPERDNVLNQFRSGRTPVLVATDVAARGLDVKDIRAVVNYDFPNGVEDYVHRI 490
Query: 373 GRTGRSKAKGTSYAFFSPSNSRQARDLV 456
GRTGR+ A G ++ FF +S+ A DL+
Sbjct: 491 GRTGRAGATGQAFTFFGDQDSKHASDLI 518
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 155 bits (375), Expect = 2e-38
Identities = 74/148 (50%), Positives = 104/148 (70%)
Frame = +1
Query: 13 NILQIVDVCQEHEKENKLNVLLQEIGQNQDPGAKTIIFVETKRKAENITRNIRRYGWPAV 192
+I Q ++V EK+ +L +L+ +Q+PG+K IIF TKR + +TRN+ R + A
Sbjct: 376 SITQHIEVVAPMEKQRRLEQILR----SQEPGSKVIIFCSTKRMCDQLTRNLTRQ-FGAA 430
Query: 193 CMHGDKTQQERDEVLYQFKEGRSSILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRI 372
+HGDK+Q ERD VL QF+ GR+ +LVATDVAARGLDV I+ V+N+D+PN EDY+HRI
Sbjct: 431 AIHGDKSQPERDNVLNQFRSGRTPVLVATDVAARGLDVKDIRAVVNYDFPNGVEDYVHRI 490
Query: 373 GRTGRSKAKGTSYAFFSPSNSRQARDLV 456
GRTGR+ A G ++ FF +S+ A DL+
Sbjct: 491 GRTGRAGATGQAFTFFGDQDSKHASDLI 518
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 154 bits (373), Expect = 3e-38
Identities = 73/148 (49%), Positives = 104/148 (70%)
Frame = +1
Query: 13 NILQIVDVCQEHEKENKLNVLLQEIGQNQDPGAKTIIFVETKRKAENITRNIRRYGWPAV 192
+I Q ++V EK ++L +L+ +Q+PG+K IIF TKR + + RN+ R + A
Sbjct: 447 SITQTIEVLAPMEKHSRLEQILR----SQEPGSKIIIFCSTKRMCDQLARNLTRT-FGAA 501
Query: 193 CMHGDKTQQERDEVLYQFKEGRSSILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRI 372
+HGDK+Q ERD+VL QF+ GR+ +LVATDVAARGLDV I+ V+N+D+PN EDY+HRI
Sbjct: 502 AIHGDKSQAERDDVLNQFRSGRTPVLVATDVAARGLDVKDIRVVVNYDFPNGVEDYVHRI 561
Query: 373 GRTGRSKAKGTSYAFFSPSNSRQARDLV 456
GRTGR+ A G +Y FF +++ A DL+
Sbjct: 562 GRTGRAGATGLAYTFFGDQDAKHASDLI 589
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 148 bits (358), Expect = 2e-36
Identities = 73/152 (48%), Positives = 106/152 (69%)
Frame = +1
Query: 1 AQDHNILQIVDVCQEHEKENKLNVLLQEIGQNQDPGAKTIIFVETKRKAENITRNIRRYG 180
A + I Q V+V + EKE +L +L+ +Q+ G+K IIF TKR +++ R++ R+
Sbjct: 649 AANKAITQYVEVVPQMEKERRLEQILR----SQERGSKVIIFCSTKRLCDHLARSVGRH- 703
Query: 181 WPAVCMHGDKTQQERDEVLYQFKEGRSSILVATDVAARGLDVDGIKYVINFDYPNSSEDY 360
+ AV +HGDKTQ ERD VL QF+ G+S +L+ATDVAARGLD+ I+ VIN+D+P EDY
Sbjct: 704 FGAVVIHGDKTQGERDWVLNQFRSGKSCVLIATDVAARGLDIKDIRVVINYDFPTGVEDY 763
Query: 361 IHRIGRTGRSKAKGTSYAFFSPSNSRQARDLV 456
+HRIGRTGR+ A G ++ FF+ + + A DL+
Sbjct: 764 VHRIGRTGRAGATGVAFTFFTEQDWKYAPDLI 795
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 145 bits (351), Expect = 1e-35
Identities = 71/146 (48%), Positives = 98/146 (67%)
Frame = +1
Query: 16 ILQIVDVCQEHEKENKLNVLLQEIGQNQDPGAKTIIFVETKRKAENITRNIRRYGWPAVC 195
I Q V+ QE +K + L LL + QD + T++FVETKR A+ + + +PA
Sbjct: 378 ITQRVEFVQESDKRSHLMDLLHAQRETQDKQSLTLVFVETKRGADTLENWLCMNEFPATS 437
Query: 196 MHGDKTQQERDEVLYQFKEGRSSILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIG 375
+HGD+TQQER+ L FK GR+ ILVATDVAARGLD+ + +V+NFD PN +DY+HRIG
Sbjct: 438 IHGDRTQQEREVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIG 497
Query: 376 RTGRSKAKGTSYAFFSPSNSRQARDL 453
RTGR+ G + AFF+ +N++ AR L
Sbjct: 498 RTGRAGKSGIATAFFNENNAQLARSL 523
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 145 bits (351), Expect = 1e-35
Identities = 71/146 (48%), Positives = 98/146 (67%)
Frame = +1
Query: 16 ILQIVDVCQEHEKENKLNVLLQEIGQNQDPGAKTIIFVETKRKAENITRNIRRYGWPAVC 195
I Q V+ QE +K + L LL + QD + T++FVETKR A+ + + +PA
Sbjct: 378 ITQRVEFVQESDKRSHLMDLLHAQRETQDKQSLTLVFVETKRGADTLENWLCMNEFPATS 437
Query: 196 MHGDKTQQERDEVLYQFKEGRSSILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIG 375
+HGD+TQQER+ L FK GR+ ILVATDVAARGLD+ + +V+NFD PN +DY+HRIG
Sbjct: 438 IHGDRTQQEREVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIG 497
Query: 376 RTGRSKAKGTSYAFFSPSNSRQARDL 453
RTGR+ G + AFF+ +N++ AR L
Sbjct: 498 RTGRAGKSGIATAFFNENNAQLARSL 523
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 141 bits (342), Expect = 2e-34
Identities = 66/153 (43%), Positives = 104/153 (67%)
Frame = +1
Query: 1 AQDHNILQIVDVCQEHEKENKLNVLLQEIGQNQDPGAKTIIFVETKRKAENITRNIRRYG 180
A +H+++QI++V E ++ +L LL++ ++Q + ++F K +AE + R +++ G
Sbjct: 333 AANHDVMQIIEVLDERARDQRLIALLEKYHKSQKN--RVLVFALYKVEAERLERFLQQRG 390
Query: 181 WPAVCMHGDKTQQERDEVLYQFKEGRSSILVATDVAARGLDVDGIKYVINFDYPNSSEDY 360
W AV +HG+K Q ER L FKEG +LVATDVAARGLD+ ++ VIN+ +P ++EDY
Sbjct: 391 WKAVSIHGNKAQSERTRSLSLFKEGSCPLLVATDVAARGLDIPDVEVVINYTFPLTTEDY 450
Query: 361 IHRIGRTGRSKAKGTSYAFFSPSNSRQARDLVS 459
+HRIGRTGR+ KG ++ FF+P N A +LV+
Sbjct: 451 VHRIGRTGRAGKKGVAHTFFTPLNKGLAGELVN 483
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 138 bits (335), Expect = 1e-33
Identities = 71/148 (47%), Positives = 98/148 (66%), Gaps = 2/148 (1%)
Frame = +1
Query: 16 ILQIVDVCQEHEKENKLNVLLQEIGQN--QDPGAKTIIFVETKRKAENITRNIRRYGWPA 189
I+Q V+ + +K + L LL +N Q A T++FVETKR A+++ + G+PA
Sbjct: 386 IVQRVEFVLDSDKRSHLMDLLHAQRENGIQGKQALTLVFVETKRGADSLENWLCINGFPA 445
Query: 190 VCMHGDKTQQERDEVLYQFKEGRSSILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHR 369
+HGD+TQQER+ L FK GR+ ILVATDVAARGLD+ + +V+NFD PN +DY+HR
Sbjct: 446 TSIHGDRTQQEREVALKAFKSGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHR 505
Query: 370 IGRTGRSKAKGTSYAFFSPSNSRQARDL 453
IGRTGR+ G + AFF+ N+ AR L
Sbjct: 506 IGRTGRAGKSGLATAFFNDGNTSLARPL 533
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 138 bits (333), Expect = 2e-33
Identities = 69/148 (46%), Positives = 99/148 (66%), Gaps = 2/148 (1%)
Frame = +1
Query: 16 ILQIVDVCQEHEKENKLNVLL--QEIGQNQDPGAKTIIFVETKRKAENITRNIRRYGWPA 189
I+Q V+ + +K + L LL Q NQ A T++FVETK+ A+++ + G+PA
Sbjct: 373 IVQRVEFVHDSDKRSHLMDLLHAQRENGNQGKQALTLVFVETKKGADSLENWLCINGFPA 432
Query: 190 VCMHGDKTQQERDEVLYQFKEGRSSILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHR 369
+HGD++QQER+ L FK GR+ ILVATDVAARGLD+ + +V+NFD PN +DY+HR
Sbjct: 433 TTIHGDRSQQEREVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHR 492
Query: 370 IGRTGRSKAKGTSYAFFSPSNSRQARDL 453
IGRTGR+ G + AFF+ +N+ A+ L
Sbjct: 493 IGRTGRAGNSGLATAFFNDNNTTMAKPL 520
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains Pfam
profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 117 bits (282), Expect = 3e-27
Identities = 57/148 (38%), Positives = 96/148 (64%)
Frame = +1
Query: 13 NILQIVDVCQEHEKENKLNVLLQEIGQNQDPGAKTIIFVETKRKAENITRNIRRYGWPAV 192
+I Q+V+V E ++ +L L+ +G+ + G K ++FV+++ K + + R++ + +P +
Sbjct: 749 DITQLVEVRPESDRFLRL---LELLGEWSEKG-KILVFVQSQEKCDALYRDMIKSSYPCL 804
Query: 193 CMHGDKTQQERDEVLYQFKEGRSSILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRI 372
+HG K Q +R+ + FK ++L+AT VAARGLDV ++ V+NFD PN EDY+HR+
Sbjct: 805 SLHGGKDQTDRESTISDFKNDVCNLLIATSVAARGLDVKELELVVNFDAPNHYEDYVHRV 864
Query: 373 GRTGRSKAKGTSYAFFSPSNSRQARDLV 456
GRTGR+ KG + F S +++ A DLV
Sbjct: 865 GRTGRAGRKGCAVTFISEDDAKYAPDLV 892
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 109 bits (261), Expect = 1e-24
Identities = 57/142 (40%), Positives = 86/142 (60%)
Frame = +1
Query: 28 VDVCQEHEKENKLNVLLQEIGQNQDPGAKTIIFVETKRKAENITRNIRRYGWPAVCMHGD 207
VDV +E K + L L + NQ IIF T++K + +T +R + MHGD
Sbjct: 240 VDVDKEEWKFDTLCDLYGRLTINQ-----AIIFCNTRQKVDWLTEKMRSSNFIVSSMHGD 294
Query: 208 KTQQERDEVLYQFKEGRSSILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGR 387
K Q+ERD+++ QF+ +S +L+A+DV ARG+DV + +VIN+D PN+ E YIHRIGR GR
Sbjct: 295 KRQKERDDIMNQFRSFKSRVLIASDVWARGIDVQTVSHVINYDIPNNPELYIHRIGRAGR 354
Query: 388 SKAKGTSYAFFSPSNSRQARDL 453
+G + F S+ + +D+
Sbjct: 355 FGREGVAINFVKSSDMKDLKDI 376
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 107 bits (258), Expect = 3e-24
Identities = 48/114 (42%), Positives = 72/114 (63%)
Frame = +1
Query: 112 KTIIFVETKRKAENITRNIRRYGWPAVCMHGDKTQQERDEVLYQFKEGRSSILVATDVAA 291
+ +IF TKRK + ++ +R + + MHGD Q+ERD ++ +F+ G S +L+ TDV A
Sbjct: 276 QAVIFCNTKRKVDYLSEKMRSHNFTVSSMHGDMPQKERDAIMNEFRSGDSRVLITTDVWA 335
Query: 292 RGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKAKGTSYAFFSPSNSRQARDL 453
RG+DV + VIN+D PN+ E YIHRIGR+GR KG + F + + RD+
Sbjct: 336 RGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILRDI 389
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 107 bits (256), Expect = 5e-24
Identities = 52/104 (50%), Positives = 72/104 (69%)
Frame = +1
Query: 7 DHNILQIVDVCQEHEKENKLNVLLQEIGQNQDPGAKTIIFVETKRKAENITRNIRRYGWP 186
+ +I Q++++ EK N+L LL+++ G+K +IFVETKR + +TR +R GWP
Sbjct: 381 NQSINQVIEIVPTPEKYNRLLTLLKQLMD----GSKILIFVETKRGCDQVTRQLRMDGWP 436
Query: 187 AVCMHGDKTQQERDEVLYQFKEGRSSILVATDVAARGLDVDGIK 318
A+ +HGDKTQ ERD VL +FK GRS I+ ATDVAARGL GI+
Sbjct: 437 ALAIHGDKTQSERDRVLAEFKSGRSPIMTATDVAARGLVSSGIR 480
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 107 bits (256), Expect = 5e-24
Identities = 55/146 (37%), Positives = 87/146 (59%)
Frame = +1
Query: 16 ILQIVDVCQEHEKENKLNVLLQEIGQNQDPGAKTIIFVETKRKAENITRNIRRYGWPAVC 195
I Q V + +E EK +L LL E+G+ I+FV TK+ ++I +N+ + G+
Sbjct: 551 ISQHVIMMKESEKFFRLQKLLDELGEKT-----AIVFVNTKKNCDSIAKNLDKAGYRVTT 605
Query: 196 MHGDKTQQERDEVLYQFKEGRSSILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIG 375
+HG K+Q++R+ L F+ R ++LVATDV RG+D+ + +VIN+D P E Y HRIG
Sbjct: 606 LHGGKSQEQREISLEGFRAKRYNVLVATDVVGRGIDIPDVAHVINYDMPKHIEMYTHRIG 665
Query: 376 RTGRSKAKGTSYAFFSPSNSRQARDL 453
RTGR+ G + +F + ++ DL
Sbjct: 666 RTGRAGKSGVATSFLTLHDTEVFYDL 691
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 105 bits (253), Expect = 1e-23
Identities = 52/149 (34%), Positives = 85/149 (57%)
Frame = +1
Query: 10 HNILQIVDVCQEHEKENKLNVLLQEIGQNQDPGAKTIIFVETKRKAENITRNIRRYGWPA 189
H ++Q E EK KLN LL + NQ +IFV++ +A + + + +P+
Sbjct: 261 HGLVQHYIKLSEMEKNRKLNDLLDALDFNQ-----VVIFVKSVSRAAELNKLLVECNFPS 315
Query: 190 VCMHGDKTQQERDEVLYQFKEGRSSILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHR 369
+C+H +Q+ER FKEG ILVATD+ RG+D++ + VIN+D P+S++ Y+HR
Sbjct: 316 ICIHSGMSQEERLTRYKSFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHR 375
Query: 370 IGRTGRSKAKGTSYAFFSPSNSRQARDLV 456
+GR GR KG + F + ++ + + V
Sbjct: 376 VGRAGRFGTKGLAITFVASASDSEVLNQV 404
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 105 bits (252), Expect = 1e-23
Identities = 52/149 (34%), Positives = 85/149 (57%)
Frame = +1
Query: 10 HNILQIVDVCQEHEKENKLNVLLQEIGQNQDPGAKTIIFVETKRKAENITRNIRRYGWPA 189
H ++Q E EK KLN LL + NQ +IFV++ +A + + + +P+
Sbjct: 178 HGLVQHYIKLSEMEKTRKLNDLLDALDFNQ-----VVIFVKSVSRAAELNKLLVECNFPS 232
Query: 190 VCMHGDKTQQERDEVLYQFKEGRSSILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHR 369
+C+H +Q+ER FKEG ILVATD+ RG+D++ + VIN+D P+S++ Y+HR
Sbjct: 233 ICIHSGMSQEERLTRYKSFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHR 292
Query: 370 IGRTGRSKAKGTSYAFFSPSNSRQARDLV 456
+GR GR KG + F + ++ + + V
Sbjct: 293 VGRAGRFGTKGLAITFVASASDSEVLNQV 321
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 105 bits (252), Expect = 1e-23
Identities = 52/149 (34%), Positives = 85/149 (57%)
Frame = +1
Query: 10 HNILQIVDVCQEHEKENKLNVLLQEIGQNQDPGAKTIIFVETKRKAENITRNIRRYGWPA 189
H ++Q E EK KLN LL + NQ +IFV++ +A + + + +P+
Sbjct: 261 HGLVQHYIKLSEMEKTRKLNDLLDALDFNQ-----VVIFVKSVSRAAELNKLLVECNFPS 315
Query: 190 VCMHGDKTQQERDEVLYQFKEGRSSILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHR 369
+C+H +Q+ER FKEG ILVATD+ RG+D++ + VIN+D P+S++ Y+HR
Sbjct: 316 ICIHSGMSQEERLTRYKSFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHR 375
Query: 370 IGRTGRSKAKGTSYAFFSPSNSRQARDLV 456
+GR GR KG + F + ++ + + V
Sbjct: 376 VGRAGRFGTKGLAITFVASASDSEVLNQV 404
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 105 bits (251), Expect = 2e-23
Identities = 47/114 (41%), Positives = 75/114 (65%)
Frame = +1
Query: 106 GAKTIIFVETKRKAENITRNIRRYGWPAVCMHGDKTQQERDEVLYQFKEGRSSILVATDV 285
G K I+F +TKR A+ ++ + R + +HGD +Q +R+ L F++G +ILVATDV
Sbjct: 349 GGKCIVFTQTKRDADRLSYALAR-SFKCEALHGDISQSQRERTLAGFRDGHFNILVATDV 407
Query: 286 AARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKAKGTSYAFFSPSNSRQAR 447
AARGLDV + +I+++ PN++E ++HR GRTGR+ KG++ +S SR +
Sbjct: 408 AARGLDVPNVDLIIHYELPNNTETFVHRTGRTGRAGKKGSAILIYSQDQSRAVK 461
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 102 bits (245), Expect = 1e-22
Identities = 56/139 (40%), Positives = 82/139 (58%), Gaps = 3/139 (2%)
Frame = +1
Query: 28 VDVCQEHE---KENKLNVLLQEIGQNQDPGAKTIIFVETKRKAENITRNIRRYGWPAVCM 198
+DV QE E +E K+ LL+ + + P +IF E K ++I + G AV +
Sbjct: 322 LDVIQEVEYVKQEAKIVYLLECLQKTTPP---VLIFCENKADVDDIHEYLLLKGVEAVAI 378
Query: 199 HGDKTQQERDEVLYQFKEGRSSILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGR 378
HG K Q++RD + FK G+ +LVATDVA++GLD I++VIN+D P E+Y+HRIGR
Sbjct: 379 HGGKDQEDRDYAISLFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPGEIENYVHRIGR 438
Query: 379 TGRSKAKGTSYAFFSPSNS 435
TGR G + F + + S
Sbjct: 439 TGRCGKTGIATTFINKNQS 457
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 101 bits (242), Expect = 2e-22
Identities = 55/139 (39%), Positives = 82/139 (58%), Gaps = 3/139 (2%)
Frame = +1
Query: 28 VDVCQEHE---KENKLNVLLQEIGQNQDPGAKTIIFVETKRKAENITRNIRRYGWPAVCM 198
+DV QE E +E K+ LL+ + + P +IF E K ++I + G AV +
Sbjct: 371 LDVIQEVEYVKQEAKIVYLLECLQKTSPP---VLIFCENKADVDDIHEYLLLKGVEAVAI 427
Query: 199 HGDKTQQERDEVLYQFKEGRSSILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGR 378
HG K Q++R+ + FK G+ +LVATDVA++GLD I++VIN+D P E+Y+HRIGR
Sbjct: 428 HGGKDQEDREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGR 487
Query: 379 TGRSKAKGTSYAFFSPSNS 435
TGR G + F + + S
Sbjct: 488 TGRCGKTGIATTFINKNQS 506
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 101 bits (242), Expect = 2e-22
Identities = 45/114 (39%), Positives = 68/114 (59%)
Frame = +1
Query: 112 KTIIFVETKRKAENITRNIRRYGWPAVCMHGDKTQQERDEVLYQFKEGRSSILVATDVAA 291
+++IFV T+RK + +T +R HGD Q RD ++ +F+ G S +L+ TD+ A
Sbjct: 282 QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLA 341
Query: 292 RGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKAKGTSYAFFSPSNSRQARDL 453
RG+DV + VINFD P E+Y+HRIGR+GR KG + F + + R D+
Sbjct: 342 RGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFMTSEDERMMADI 395
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 101 bits (241), Expect = 3e-22
Identities = 46/114 (40%), Positives = 72/114 (63%)
Frame = +1
Query: 106 GAKTIIFVETKRKAENITRNIRRYGWPAVCMHGDKTQQERDEVLYQFKEGRSSILVATDV 285
G K I+F +TKR A+ + + + + +HGD +Q +R+ L F++G SILVATDV
Sbjct: 361 GGKCIVFTQTKRDADRLAFGLAK-SYKCEALHGDISQAQRERTLAGFRDGNFSILVATDV 419
Query: 286 AARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKAKGTSYAFFSPSNSRQAR 447
AARGLDV + VI+++ PN++E ++HR GRTGR+ KG++ +R +
Sbjct: 420 AARGLDVPNVDLVIHYELPNNTETFVHRTGRTGRAGKKGSAILIHGQDQTRAVK 473
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 100 bits (240), Expect = 4e-22
Identities = 45/116 (38%), Positives = 73/116 (62%)
Frame = +1
Query: 106 GAKTIIFVETKRKAENITRNIRRYGWPAVCMHGDKTQQERDEVLYQFKEGRSSILVATDV 285
G KTI+F +TKR A+ ++ + +HGD +Q +R+ L F++G+ ++LVATDV
Sbjct: 351 GGKTIVFTQTKRDADEVSLALSN-SIATEALHGDISQHQRERTLNAFRQGKFTVLVATDV 409
Query: 286 AARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKAKGTSYAFFSPSNSRQARDL 453
A+RGLD+ + VI+++ PN E ++HR GRTGR+ +G++ + S R R L
Sbjct: 410 ASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGSAILMHTSSQKRTVRSL 465
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 99 bits (238), Expect = 7e-22
Identities = 45/114 (39%), Positives = 68/114 (59%)
Frame = +1
Query: 112 KTIIFVETKRKAENITRNIRRYGWPAVCMHGDKTQQERDEVLYQFKEGRSSILVATDVAA 291
+++IFV T+RK + +T +R HGD Q RD ++ +F+ G S +L+ TD+ A
Sbjct: 280 QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLA 339
Query: 292 RGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKAKGTSYAFFSPSNSRQARDL 453
RG+DV + VINFD P E+Y+HRIGR+GR KG + F + + R D+
Sbjct: 340 RGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDI 393
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 99.5 bits (237), Expect = 9e-22
Identities = 45/114 (39%), Positives = 68/114 (59%)
Frame = +1
Query: 112 KTIIFVETKRKAENITRNIRRYGWPAVCMHGDKTQQERDEVLYQFKEGRSSILVATDVAA 291
+++IFV T+RK + +T +R HGD Q RD ++ +F+ G S +L+ TD+ A
Sbjct: 280 QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLA 339
Query: 292 RGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKAKGTSYAFFSPSNSRQARDL 453
RG+DV + VINFD P E+Y+HRIGR+GR KG + F + + R D+
Sbjct: 340 RGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTLDDQRMLFDI 393
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 96.7 bits (230), Expect = 7e-21
Identities = 48/136 (35%), Positives = 80/136 (58%)
Frame = +1
Query: 52 KENKLNVLLQEIGQNQDPGAKTIIFVETKRKAENITRNIRRYGWPAVCMHGDKTQQERDE 231
+E KL L Q ++ +P +IFV++K +A+ + ++ A +H D ER+
Sbjct: 364 EEGKLLALRQSFAESLNP--PVLIFVQSKERAKELYDELKCENIRAGVIHSDLPPGEREN 421
Query: 232 VLYQFKEGRSSILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKAKGTSY 411
+ QF+ G +L+ATDV ARG+D GI VIN+D+P+S+ YIHRIGR+GR+ G +
Sbjct: 422 AVDQFRAGEKWVLIATDVIARGMDFKGINCVINYDFPDSASAYIHRIGRSGRAGRSGEAI 481
Query: 412 AFFSPSNSRQARDLVS 459
F++ + R++ +
Sbjct: 482 TFYTEQDVPFLRNIAN 497
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 95.9 bits (228), Expect = 1e-20
Identities = 53/152 (34%), Positives = 84/152 (55%), Gaps = 1/152 (0%)
Frame = +1
Query: 7 DHNILQIVDVCQEHEKENKLNVLLQEIGQNQDPGAKTIIFVETKRKAENITRNIRRYGWP 186
+ +I Q+V+V + KL LL+++ D G ++F K + I + +
Sbjct: 443 NEDITQVVNVIPSDAE--KLPWLLEKLPGMIDEG-DVLVFASKKATVDEIEAQLTLNSFK 499
Query: 187 AVCMHGDKTQQERDEVLYQFKEGRSSILVATDVAARGLDVDGIKYVINFDYPNSSEDYIH 366
+HGDK Q R E L +FK G +L+ATDVAARGLD+ +K V+N+D + ++H
Sbjct: 500 VAALHGDKDQASRMETLQKFKSGVHHVLIATDVAARGLDIKSLKTVVNYDIAKDMDMHVH 559
Query: 367 RIGRTGRSKAK-GTSYAFFSPSNSRQARDLVS 459
RIGRTGR+ + G +Y + +R A +LV+
Sbjct: 560 RIGRTGRAGDRDGVAYTLVTQREARFAGELVN 591
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 92.7 bits (220), Expect = 1e-19
Identities = 45/128 (35%), Positives = 77/128 (60%), Gaps = 7/128 (5%)
Frame = +1
Query: 49 EKENKLNVLLQEIGQNQDPGAKTIIFVETKRKAENITRNIRRYGWPAVCMHGDKTQQERD 228
+++NK+ V+ +I + D G +TIIFV+TK A+ + + + G+ +HG+ T+ +RD
Sbjct: 322 KEQNKIEVIKDQIMELGDIG-QTIIFVKTKASAQKVHKALAEMGYDVTSVHGNLTESDRD 380
Query: 229 EVLYQFKEGRSSILVATDVAARGLDVDGIKYVINFDYPNSSED-------YIHRIGRTGR 387
+++ +FKE + +L+ATDV ARG D + V+N++ P E Y+HR+GR GR
Sbjct: 381 KIVKEFKECLTQVLIATDVIARGFDQQRVNLVVNYNLPTKYETGEPDYEVYLHRVGRAGR 440
Query: 388 SKAKGTSY 411
KG +
Sbjct: 441 FGRKGAVF 448
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 89.4 bits (212), Expect = 1e-18
Identities = 42/124 (33%), Positives = 68/124 (54%)
Frame = +1
Query: 16 ILQIVDVCQEHEKENKLNVLLQEIGQNQDPGAKTIIFVETKRKAENITRNIRRYGWPAVC 195
+ Q +E +K + LN L ++ NQ +IIF + + E + + I G+
Sbjct: 336 VTQYYAFVEERQKVHCLNTLFSKLQINQ-----SIIFCNSVNRVELLAKKITELGYSCFY 390
Query: 196 MHGDKTQQERDEVLYQFKEGRSSILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIG 375
+H Q R+ V ++F+ G LV TD+ RG+D+ + VINFD+P +SE Y+HR+G
Sbjct: 391 IHAKMVQDHRNRVFHEFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPRTSESYLHRVG 450
Query: 376 RTGR 387
R+GR
Sbjct: 451 RSGR 454
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 89.4 bits (212), Expect = 1e-18
Identities = 42/124 (33%), Positives = 68/124 (54%)
Frame = +1
Query: 16 ILQIVDVCQEHEKENKLNVLLQEIGQNQDPGAKTIIFVETKRKAENITRNIRRYGWPAVC 195
+ Q +E +K + LN L ++ NQ +IIF + + E + + I G+
Sbjct: 336 VTQYYAFVEERQKVHCLNTLFSKLQINQ-----SIIFCNSVNRVELLAKKITELGYSCFY 390
Query: 196 MHGDKTQQERDEVLYQFKEGRSSILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIG 375
+H Q R+ V ++F+ G LV TD+ RG+D+ + VINFD+P +SE Y+HR+G
Sbjct: 391 IHAKMVQDHRNRVFHEFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPRTSESYLHRVG 450
Query: 376 RTGR 387
R+GR
Sbjct: 451 RSGR 454
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 88.6 bits (210), Expect = 2e-18
Identities = 42/124 (33%), Positives = 67/124 (54%)
Frame = +1
Query: 16 ILQIVDVCQEHEKENKLNVLLQEIGQNQDPGAKTIIFVETKRKAENITRNIRRYGWPAVC 195
+ Q +E +K + LN L ++ NQ +IIF + + E + + I G+
Sbjct: 366 VTQYYAFVEERQKVHCLNTLFSKLQINQ-----SIIFCNSVNRVELLAKKITELGYSCFY 420
Query: 196 MHGDKTQQERDEVLYQFKEGRSSILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIG 375
+H Q R+ V + F+ G LV TD+ RG+D+ + VINFD+P +SE Y+HR+G
Sbjct: 421 IHAKMVQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPRTSESYLHRVG 480
Query: 376 RTGR 387
R+GR
Sbjct: 481 RSGR 484
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 87.0 bits (206), Expect = 5e-18
Identities = 42/100 (42%), Positives = 61/100 (61%)
Frame = +1
Query: 103 PGAKTIIFVETKRKAENITRNIRRYGWPAVCMHGDKTQQERDEVLYQFKEGRSSILVATD 282
P + ++IF T + +R G+ A+ + G TQ +R L +FK G +ILV TD
Sbjct: 259 PESTSMIFTRTCDGTRFLALVLRSLGFRAIPISGQMTQSKRLGALNKFKAGECNILVCTD 318
Query: 283 VAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKAKG 402
VA+RGLD+ + VIN+D P +S+DYIHR+GRT R+ G
Sbjct: 319 VASRGLDIPSVDVVINYDIPTNSKDYIHRVGRTARAGRSG 358
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 87.0 bits (206), Expect = 5e-18
Identities = 42/124 (33%), Positives = 67/124 (54%)
Frame = +1
Query: 16 ILQIVDVCQEHEKENKLNVLLQEIGQNQDPGAKTIIFVETKRKAENITRNIRRYGWPAVC 195
I Q +E +K + LN L ++ NQ +IIF + + E + + I G+
Sbjct: 343 ITQFYAFVEERQKIHCLNTLFSKLQINQ-----SIIFCNSVNRVELLAKKITELGYSCFY 397
Query: 196 MHGDKTQQERDEVLYQFKEGRSSILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIG 375
+H Q R+ V + F+ G LV TD+ RG+D+ + VINFD+P ++E Y+HR+G
Sbjct: 398 IHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRVG 457
Query: 376 RTGR 387
R+GR
Sbjct: 458 RSGR 461
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 87.0 bits (206), Expect = 5e-18
Identities = 42/124 (33%), Positives = 67/124 (54%)
Frame = +1
Query: 16 ILQIVDVCQEHEKENKLNVLLQEIGQNQDPGAKTIIFVETKRKAENITRNIRRYGWPAVC 195
I Q +E +K + LN L ++ NQ +IIF + + E + + I G+
Sbjct: 343 ITQFYAFVEERQKIHCLNTLFSKLQINQ-----SIIFCNSVNRVELLAKKITELGYSCFY 397
Query: 196 MHGDKTQQERDEVLYQFKEGRSSILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIG 375
+H Q R+ V + F+ G LV TD+ RG+D+ + VINFD+P ++E Y+HR+G
Sbjct: 398 IHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRVG 457
Query: 376 RTGR 387
R+GR
Sbjct: 458 RSGR 461
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 86.6 bits (205), Expect = 7e-18
Identities = 44/129 (34%), Positives = 73/129 (56%), Gaps = 1/129 (0%)
Frame = +1
Query: 49 EKENKLNVLLQEIGQNQDPGAKT-IIFVETKRKAENITRNIRRYGWPAVCMHGDKTQQER 225
+K+ K L+ + Q +D G ++ +IFV T R + ++ + + MH +Q R
Sbjct: 282 DKDAKELYLVHILSQMEDKGIRSAMIFVSTCRTCQRLSLMLDELEVENIAMHSLNSQSMR 341
Query: 226 DEVLYQFKEGRSSILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKAKGT 405
L +FK G+ IL+ATDVA+RGLD+ + VIN+D P DY+HR+GRT R+ G
Sbjct: 342 LSALSKFKSGKVPILLATDVASRGLDIPTVDLVINYDIPRDPRDYVHRVGRTARAGRGGL 401
Query: 406 SYAFFSPSN 432
+ + + ++
Sbjct: 402 AVSIITETD 410
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 85.4 bits (202), Expect = 2e-17
Identities = 47/118 (39%), Positives = 68/118 (57%), Gaps = 2/118 (1%)
Frame = +1
Query: 55 ENKLNVLLQEIGQNQDPGAKTIIFVETKRKAENITRNIRRYGWPAVCMHGDKTQQERDEV 234
E+KL LLQ + + G+K ++F T + + + V HG+ ++R E
Sbjct: 353 EDKLEALLQVLEPSLAKGSKVMVFCNTLNSSRAVDHYLSENQISTVNYHGEVPAEQRVEN 412
Query: 235 LYQFK--EGRSSILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKAKG 402
L +FK EG LV TD+AARGLD+D + +V+ FD+P +S DY+HR GRT R AKG
Sbjct: 413 LKKFKDEEGDCPTLVCTDLAARGLDLD-VDHVVMFDFPKNSIDYLHRTGRTARMGAKG 469
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 83.4 bits (197), Expect = 7e-17
Identities = 42/108 (38%), Positives = 64/108 (59%)
Frame = +1
Query: 109 AKTIIFVETKRKAENITRNIRRYGWPAVCMHGDKTQQERDEVLYQFKEGRSSILVATDVA 288
+K IIF TK+ A + G A +HG+ TQ +R + L F++ L+ATDVA
Sbjct: 413 SKVIIFSGTKQAAHRLKILFGLAGLKAAELHGNLTQAQRLDSLELFRKQEVDFLIATDVA 472
Query: 289 ARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKAKGTSYAFFSPSN 432
ARGLD+ G++ VIN+ P + Y+HR+GRT R+ +G + F + S+
Sbjct: 473 ARGLDIIGVQTVINYACPREIDSYVHRVGRTARAGREGYAVTFVTDSD 520
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 83.4 bits (197), Expect = 7e-17
Identities = 37/80 (46%), Positives = 55/80 (68%)
Frame = +1
Query: 217 QERDEVLYQFKEGRSSILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKA 396
+ +++ + FK ++L+AT VAARGLDV ++ V+NFD PN EDY+HR+GRTGR+
Sbjct: 651 RSQEKSISDFKSDVCNLLIATSVAARGLDVKELELVVNFDAPNHYEDYVHRVGRTGRAGR 710
Query: 397 KGTSYAFFSPSNSRQARDLV 456
KG + F S +++ A DLV
Sbjct: 711 KGCAVTFISEDDAKYAPDLV 730
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 83.4 bits (197), Expect = 7e-17
Identities = 43/134 (32%), Positives = 75/134 (55%), Gaps = 1/134 (0%)
Frame = +1
Query: 55 ENKLNVLLQEIGQNQDPGAKTIIFVETKRKAENITRNIRRYGW-PAVCMHGDKTQQERDE 231
E K + LL + ++ +T+IFV TK E + + P+VC +GD Q R
Sbjct: 254 EEKYSALLYLVREHISSDQQTLIFVSTKHHVEFVNSLFKLENIEPSVC-YGDMDQDARKI 312
Query: 232 VLYQFKEGRSSILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKAKGTSY 411
+ +F+ ++ +L+ TD+AARG+D+ + VIN+D+P + ++HR+GR R+ G +Y
Sbjct: 313 HVSRFRARKTMLLIVTDIAARGIDIPLLDNVINWDFPPRPKIFVHRVGRAARAGRTGCAY 372
Query: 412 AFFSPSNSRQARDL 453
+F +P + DL
Sbjct: 373 SFVTPEDMPYMLDL 386
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 81.0 bits (191), Expect = 4e-16
Identities = 49/136 (36%), Positives = 74/136 (54%), Gaps = 3/136 (2%)
Frame = +1
Query: 55 ENKLNVLLQEIGQNQDPGAKTIIFVETKRKAENITR--NIRRYGWPAVCMHGDKTQQERD 228
E KL++L I + + ++ ++F+ TK++ + + N R G P +HG +Q++R
Sbjct: 301 EKKLDMLWSFIKTHLN--SRILVFLSTKKQVKFVHEAFNKLRPGIPLKSLHGKMSQEKRM 358
Query: 229 EVLYQFKEGRSSILVATDVAARGLDVD-GIKYVINFDYPNSSEDYIHRIGRTGRSKAKGT 405
V QF E R S+L TDV ARGLD D + +V+ D P YIHR+GRT R +G
Sbjct: 359 GVYSQFIE-RQSVLFCTDVLARGLDFDKAVDWVVQVDCPEDVASYIHRVGRTARFYTQGK 417
Query: 406 SYAFFSPSNSRQARDL 453
S F +PS + L
Sbjct: 418 SLLFLTPSEEKMIEKL 433
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 81.0 bits (191), Expect = 4e-16
Identities = 41/133 (30%), Positives = 74/133 (55%)
Frame = +1
Query: 37 CQEHEKENKLNVLLQEIGQNQDPGAKTIIFVETKRKAENITRNIRRYGWPAVCMHGDKTQ 216
C+E EK+ L +L GQ +TI+F + +I+ ++ G + + Q
Sbjct: 484 CEEKEKDAYLYYILSVHGQG-----RTIVFCTSVTDLRHISGLLKILGLDVCTLFSEMKQ 538
Query: 217 QERDEVLYQFKEGRSSILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKA 396
+ R + + +F+ + IL+ATD+ ARG+D+ ++ +I++ P+S+E Y+HR GRT R+ A
Sbjct: 539 RARLKSIDRFRASENGILIATDLVARGIDIKNVRTIIHYKLPHSAEVYVHRCGRTARAFA 598
Query: 397 KGTSYAFFSPSNS 435
G S A P+ +
Sbjct: 599 DGCSIALIEPNET 611
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 80.6 bits (190), Expect = 5e-16
Identities = 35/79 (44%), Positives = 48/79 (60%)
Frame = +1
Query: 199 HGDKTQQERDEVLYQFKEGRSSILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGR 378
HG Q+ RD L F E S +L+ TDVAARGLD+ GI YV+ +D P + +IHR+GR
Sbjct: 300 HGKMDQKGRDTALASFTEASSGVLLCTDVAARGLDIPGIDYVVQYDPPQDPDVFIHRVGR 359
Query: 379 TGRSKAKGTSYAFFSPSNS 435
T R + +G + F P +
Sbjct: 360 TARMERQGRAIVFLMPKET 378
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 79.0 bits (186), Expect = 1e-15
Identities = 43/125 (34%), Positives = 69/125 (55%)
Frame = +1
Query: 73 LLQEIGQNQDPGAKTIIFVETKRKAENITRNIRRYGWPAVCMHGDKTQQERDEVLYQFKE 252
L+ +I G +TIIF ETK + ++ + + +HG+ Q +R+ L F+
Sbjct: 339 LIPDIISCYSSGGQTIIFAETKVQVSELSGLLDG----SRALHGEIPQSQREVTLAGFRN 394
Query: 253 GRSSILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKAKGTSYAFFSPSN 432
G+ + LVAT+VAARGLD++ ++ +I + P E YIHR GRTGR+ G + +
Sbjct: 395 GKFATLVATNVAARGLDINDVQLIIQCEPPREVEAYIHRSGRTGRAGNTGVAVTLYDSRK 454
Query: 433 SRQAR 447
S +R
Sbjct: 455 SSVSR 459
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 76.2 bits (179), Expect = 1e-14
Identities = 50/144 (34%), Positives = 77/144 (53%), Gaps = 10/144 (6%)
Frame = +1
Query: 55 ENKLNVLLQEIGQNQDPGAKTIIF---VETKRKAENITRNIRRYGWP--AVCMHGDKTQQ 219
+NK LLQ + +N P +KTIIF +ET RK ENI + + R + H +Q+
Sbjct: 620 QNKKTALLQIMEEN--PVSKTIIFCNKIETCRKVENIFKRVDRKERQLHVLPFHAALSQE 677
Query: 220 ERDEVLYQFK----EGRSSILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGR 387
R + +F E S LV TD A+RG+D G+ +V+ FD+P +Y+ R+GRT R
Sbjct: 678 SRLTNMQEFTSSQPEENSLFLVCTDRASRGIDFSGVDHVVLFDFPRDPSEYVRRVGRTAR 737
Query: 388 -SKAKGTSYAFFSPSNSRQARDLV 456
++ KG ++ F AR ++
Sbjct: 738 GARGKGKAFIFVVGKQVGLARRII 761
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 74.5 bits (175), Expect = 3e-14
Identities = 44/138 (31%), Positives = 76/138 (55%), Gaps = 1/138 (0%)
Frame = +1
Query: 49 EKENKLNVLLQEIGQNQDPGAKTIIFVETKRKAENITRNIRRY-GWPAVCMHGDKTQQER 225
+K+ KL +L+ + P +++V ++ A+ + I G A+ +HG+K +ER
Sbjct: 341 QKKQKLFDILRSQNHFKPPA---VVYVSSRVGADLLANAITVVTGVKALSIHGEKPMKER 397
Query: 226 DEVLYQFKEGRSSILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKAKGT 405
+V+ F G +LV+T V RG+D+ ++ VI FD P++ ++YIH IGR R KGT
Sbjct: 398 RDVMGSFLGGEVPVLVSTGVLGRGVDLLVVRQVIVFDMPSTIKEYIHVIGRASRMGEKGT 457
Query: 406 SYAFFSPSNSRQARDLVS 459
+ F + + DLV+
Sbjct: 458 AIVFVNEDDRNLFPDLVA 475
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 74.5 bits (175), Expect = 3e-14
Identities = 44/138 (31%), Positives = 76/138 (55%), Gaps = 1/138 (0%)
Frame = +1
Query: 49 EKENKLNVLLQEIGQNQDPGAKTIIFVETKRKAENITRNIRRY-GWPAVCMHGDKTQQER 225
+K+ KL +L+ + P +++V ++ A+ + I G A+ +HG+K +ER
Sbjct: 204 QKKQKLFDILRSQNHFKPPA---VVYVSSRVGADLLANAITVVTGVKALSIHGEKPMKER 260
Query: 226 DEVLYQFKEGRSSILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKAKGT 405
+V+ F G +LV+T V RG+D+ ++ VI FD P++ ++YIH IGR R KGT
Sbjct: 261 RDVMGSFLGGEVPVLVSTGVLGRGVDLLVVRQVIVFDMPSTIKEYIHVIGRASRMGEKGT 320
Query: 406 SYAFFSPSNSRQARDLVS 459
+ F + + DLV+
Sbjct: 321 AIVFVNEDDRNLFPDLVA 338
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 74.1 bits (174), Expect = 4e-14
Identities = 40/135 (29%), Positives = 72/135 (53%), Gaps = 1/135 (0%)
Frame = +1
Query: 55 ENKLNVLLQEIGQNQDPGA-KTIIFVETKRKAENITRNIRRYGWPAVCMHGDKTQQERDE 231
+++++ L++ + N + +T++F T E + + + H + ER
Sbjct: 406 DSQVDALIEAVKNNNNTNTERTMVFANTVEAVEAVADILEKASIQCYRYHKNHKLDERAN 465
Query: 232 VLYQFKEGRSSILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKAKGTSY 411
+L F+E + V TD AARG+DV + +VI D+ +S+ D++HRIGRT R+ GT
Sbjct: 466 ILADFRE-TGGVFVCTDAAARGVDVPNVSHVIQADFASSAVDFLHRIGRTARAGQYGTVT 524
Query: 412 AFFSPSNSRQARDLV 456
+ ++ +N RDLV
Sbjct: 525 SLYTEAN----RDLV 535
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 73.7 bits (173), Expect = 5e-14
Identities = 34/77 (44%), Positives = 44/77 (57%)
Frame = +1
Query: 196 MHGDKTQQERDEVLYQFKEGRSSILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIG 375
+HGD Q RD+ L F + S L+ TDVAARGLD+ GI YV+ +D P + HR G
Sbjct: 308 IHGDMKQNARDKALASFTKASSGALLCTDVAARGLDIPGIDYVVQYDPPQDPNMFNHRAG 367
Query: 376 RTGRSKAKGTSYAFFSP 426
RT R +G + F P
Sbjct: 368 RTARLGRQGRAIVFLLP 384
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 73.3 bits (172), Expect = 7e-14
Identities = 37/115 (32%), Positives = 60/115 (52%), Gaps = 1/115 (0%)
Frame = +1
Query: 112 KTIIFVETKRKAENITRNIRRYGWPAVCMHGDKTQQERDEVLYQFKEGRSSILVATDVAA 291
K ++F T + + T ++ +HG Q R + + F + + IL+ TDVAA
Sbjct: 336 KIMVFFSTCKSVQFHTEIMKISDVDVSDIHGGMDQNRRTKTFFDFMKAKKGILLCTDVAA 395
Query: 292 RGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSK-AKGTSYAFFSPSNSRQARDL 453
RGLD+ + ++I +D P+ +YIHR+GRT R + AKG + P + R L
Sbjct: 396 RGLDIPSVDWIIQYDPPDKPTEYIHRVGRTARGEGAKGKALLVLIPEELQFIRYL 450
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 73.3 bits (172), Expect = 7e-14
Identities = 30/77 (38%), Positives = 47/77 (61%)
Frame = +1
Query: 196 MHGDKTQQERDEVLYQFKEGRSSILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIG 375
+HG Q++R FK + ++L++TDVAARGLD ++ +I +D P + +Y+HR+G
Sbjct: 379 LHGSMEQEDRRSAFGTFKTEKQAVLLSTDVAARGLDFPKVRCIIQYDCPGEATEYVHRVG 438
Query: 376 RTGRSKAKGTSYAFFSP 426
RT R KG + F P
Sbjct: 439 RTARIGEKGEALLFLQP 455
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 72.9 bits (171), Expect = 9e-14
Identities = 36/96 (37%), Positives = 52/96 (54%)
Frame = +1
Query: 118 IIFVETKRKAENITRNIRRYGWPAVCMHGDKTQQERDEVLYQFKEGRSSILVATDVAARG 297
I F+ R+ +++ + G + MHGD + R VL +FK G +LV +++ARG
Sbjct: 411 IAFMNHSRQLKDVVYKLEARGMNSAEMHGDLGKLGRSTVLKKFKNGEIKVLVTNELSARG 470
Query: 298 LDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKAKGT 405
LDV V+N + P + Y HR GRTGR KGT
Sbjct: 471 LDVAECDLVVNLELPTDAVHYAHRAGRTGRLGRKGT 506
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 71.3 bits (167), Expect = 3e-13
Identities = 42/122 (34%), Positives = 62/122 (50%), Gaps = 1/122 (0%)
Frame = +1
Query: 64 LNVLLQE-IGQNQDPGAKTIIFVETKRKAENITRNIRRYGWPAVCMHGDKTQQERDEVLY 240
L+VLL+E I N D K IIF T + + + +H K Q R V
Sbjct: 627 LHVLLKEHIADNVD--YKVIIFCTTAMVTRLVADLLSQLSLNVREIHSRKPQSYRTRVSD 684
Query: 241 QFKEGRSSILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKAKGTSYAFF 420
+F++ ++ ILV +DV+ARG+D + V+ P+ E YIHR+GRTGR +G
Sbjct: 685 EFRKSKAIILVTSDVSARGVDYPDVSLVVQMGLPSDREQYIHRLGRTGRKGKEGEGVLLL 744
Query: 421 SP 426
+P
Sbjct: 745 AP 746
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 69.7 bits (163), Expect = 9e-13
Identities = 36/107 (33%), Positives = 53/107 (49%)
Frame = +1
Query: 106 GAKTIIFVETKRKAENITRNIRRYGWPAVCMHGDKTQQERDEVLYQFKEGRSSILVATDV 285
G K IIF T + + + +H K Q R V +F++ +S ILV +DV
Sbjct: 338 GYKVIIFCTTAMVTRLVADLLGKLSLNVREIHSRKPQSYRTRVSDEFRKSKSIILVTSDV 397
Query: 286 AARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKAKGTSYAFFSP 426
+ARG+D + V+ P+ E YIHR+GRTGR +G +P
Sbjct: 398 SARGVDYPDVSLVVQMGLPSDREQYIHRLGRTGRKGKEGEGVLLLAP 444
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 68.5 bits (160), Expect = 2e-12
Identities = 38/120 (31%), Positives = 59/120 (49%), Gaps = 3/120 (2%)
Frame = +1
Query: 106 GAKTIIFVETKRKAENITRNIRRYGWPAVCMH---GDKTQQERDEVLYQFKEGRSSILVA 276
G K IIF + + + + +G P + G Q R + L F++G +LVA
Sbjct: 325 GEKCIIFTSSVETTRRLCKLLNFFGDPKIKAKEYSGGLNQSLRSKELKAFRKGDIQVLVA 384
Query: 277 TDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKAKGTSYAFFSPSNSRQARDLV 456
+D RG+DV G+ VIN+D P ++ +IHR GRT R+ G + S R+ L+
Sbjct: 385 SDALTRGMDVKGVTNVINYDMPPFAKTFIHRAGRTARAGQAGRCFTLLSNHEVRRFSKLL 444
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 68.1 bits (159), Expect = 3e-12
Identities = 43/141 (30%), Positives = 62/141 (43%)
Frame = +1
Query: 4 QDHNILQIVDVCQEHEKENKLNVLLQEIGQNQDPGAKTIIFVETKRKAENITRNIRRYGW 183
+ H+ ++ + HE L L + N P K I+F T + +R
Sbjct: 553 ETHDKVRQSCIVAPHESHFHLVPHLLKEHINNTPDYKIIVFCSTGMVTSLMYTLLREMKL 612
Query: 184 PAVCMHGDKTQQERDEVLYQFKEGRSSILVATDVAARGLDVDGIKYVINFDYPNSSEDYI 363
+H K Q R V +FKE ILV +DV+ARG++ + VI P+ E YI
Sbjct: 613 NVREIHARKPQLHRTRVSDEFKESNRLILVTSDVSARGMNYPDVTLVIQVGIPSDREQYI 672
Query: 364 HRIGRTGRSKAKGTSYAFFSP 426
HR+GRTGR G +P
Sbjct: 673 HRLGRTGREGKGGEGLLLIAP 693
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 67.3 bits (157), Expect = 5e-12
Identities = 34/106 (32%), Positives = 57/106 (53%), Gaps = 1/106 (0%)
Frame = +1
Query: 112 KTIIFVETKRKAENITRNIRRYGWPAVCMHGDKTQQERDEVLYQFKEGRSSILVATDVAA 291
K ++F T + + R + + + G Q +R QF + + IL+ T+VAA
Sbjct: 402 KIMVFFSTCKSTKFHAELFRYIKFDCLEIRGGIDQNKRTPTFLQFIKAETGILLCTNVAA 461
Query: 292 RGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSK-AKGTSYAFFSP 426
RGLD + +++ +D P++ DYIHR+GRT R + AKG + +P
Sbjct: 462 RGLDFPHVDWIVQYDPPDNPTDYIHRVGRTARGEGAKGKALLVLTP 507
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 65.7 bits (153), Expect = 1e-11
Identities = 43/141 (30%), Positives = 62/141 (43%)
Frame = +1
Query: 4 QDHNILQIVDVCQEHEKENKLNVLLQEIGQNQDPGAKTIIFVETKRKAENITRNIRRYGW 183
+ H+ ++ + HE L L + N P K I+F T + +R
Sbjct: 600 ETHDKVKQSCIVAPHESHFHLVPHLLKEHINNMPDYKIIVFCSTGMVTSLMYTLLREMKL 659
Query: 184 PAVCMHGDKTQQERDEVLYQFKEGRSSILVATDVAARGLDVDGIKYVINFDYPNSSEDYI 363
+H K Q R V +FKE ILV +DV+ARG++ + VI P+ E YI
Sbjct: 660 NVREIHARKPQLHRTCVSDEFKESNRLILVTSDVSARGMNYPDVTLVIQVGIPSDREQYI 719
Query: 364 HRIGRTGRSKAKGTSYAFFSP 426
HR+GRTGR G +P
Sbjct: 720 HRLGRTGREGKGGKGLLLIAP 740
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 64.5 bits (150), Expect = 3e-11
Identities = 33/105 (31%), Positives = 50/105 (47%)
Frame = +1
Query: 112 KTIIFVETKRKAENITRNIRRYGWPAVCMHGDKTQQERDEVLYQFKEGRSSILVATDVAA 291
K I+F T + + + +H K Q R V +F++ + ILV +DV+A
Sbjct: 314 KVIVFCTTAMVTKLVADLLGELNLNVREIHSRKPQSYRTRVSNEFRKSKGLILVTSDVSA 373
Query: 292 RGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKAKGTSYAFFSP 426
RG+D + V+ P E YIHR+GRTGR +G +P
Sbjct: 374 RGVDYPDVTLVLQVGLPKDREQYIHRLGRTGRKGKEGEGILLLAP 418
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 62.5 bits (145), Expect = 1e-10
Identities = 42/126 (33%), Positives = 60/126 (47%), Gaps = 13/126 (10%)
Frame = +1
Query: 49 EKENKLNVLLQEIGQNQDPGAKTIIFV----ETKRKAEN---------ITRNIRRYGWPA 189
EK NK VLL + D IIFV E +KA N + +
Sbjct: 311 EKTNKHQVLLALL--ESDAPESAIIFVGEQSEKSKKAGNDPSTTLLMEFLKTSYKGSLEI 368
Query: 190 VCMHGDKTQQERDEVLYQFKEGRSSILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHR 369
+ + GD R L + ++G +LV+TD+AARG+D+ ++ NFD P + DY+HR
Sbjct: 369 LLLEGDMNFNSRAASLTEIRQGGGFLLVSTDIAARGIDLPETTHIFNFDLPQTVTDYLHR 428
Query: 370 IGRTGR 387
GR GR
Sbjct: 429 AGRAGR 434
>At5g19210.1 68418.m02288 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 315
Score = 62.5 bits (145), Expect = 1e-10
Identities = 42/126 (33%), Positives = 60/126 (47%), Gaps = 13/126 (10%)
Frame = +1
Query: 49 EKENKLNVLLQEIGQNQDPGAKTIIFV----ETKRKAEN---------ITRNIRRYGWPA 189
EK NK VLL + D IIFV E +KA N + +
Sbjct: 154 EKTNKHQVLLALL--ESDAPESAIIFVGEQSEKSKKAGNDPSTTLLMEFLKTSYKGSLEI 211
Query: 190 VCMHGDKTQQERDEVLYQFKEGRSSILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHR 369
+ + GD R L + ++G +LV+TD+AARG+D+ ++ NFD P + DY+HR
Sbjct: 212 LLLEGDMNFNSRAASLTEIRQGGGFLLVSTDIAARGIDLPETTHIFNFDLPQTVTDYLHR 271
Query: 370 IGRTGR 387
GR GR
Sbjct: 272 AGRAGR 277
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 56.0 bits (129), Expect = 1e-08
Identities = 26/56 (46%), Positives = 33/56 (58%)
Frame = +1
Query: 292 RGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKAKGTSYAFFSPSNSRQARDLVS 459
RG+D + VINFD P S YIHRIGRTGR+ + G+S + SP D+ S
Sbjct: 398 RGIDFKKVHTVINFDMPQSVTGYIHRIGRTGRAYSSGSSVSLISPDEMEGFEDIKS 453
>At5g27680.1 68418.m03319 DEAD/DEAH box helicase, putative similar
to WRN (Werner syndrome) protein - Mus musculus,
EMBL:AF241636; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00627: UBA/TS-N domain
Length = 858
Score = 49.2 bits (112), Expect = 1e-06
Identities = 25/99 (25%), Positives = 49/99 (49%)
Frame = +1
Query: 91 QNQDPGAKTIIFVETKRKAENITRNIRRYGWPAVCMHGDKTQQERDEVLYQFKEGRSSIL 270
+ +D TII+V T++++ NI + + G A + ++ +V F + + ++
Sbjct: 492 KQKDLEGLTIIYVPTRKESVNIAKYLCGVGLKAAAYNASLPKKHLRQVHQDFHDNKLQVV 551
Query: 271 VATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGR 387
VAT G+D ++ +I++ + S E Y GR GR
Sbjct: 552 VATIAFGMGIDKKNVRKIIHYGWLQSLEAYYQEAGRAGR 590
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 49.2 bits (112), Expect = 1e-06
Identities = 22/42 (52%), Positives = 27/42 (64%)
Frame = +1
Query: 199 HGDKTQQERDEVLYQFKEGRSSILVATDVAARGLDVDGIKYV 324
HG Q+ RD L F E S +L+ TDVAARGLD+ GI Y+
Sbjct: 273 HGKMDQKGRDTALASFTEASSGVLLCTDVAARGLDIPGIVYI 314
>At1g27880.1 68414.m03416 ATP-dependent DNA helicase, putative
similar to SP|O94761 ATP-dependent DNA helicase Q4
(RecQ4) {Homo sapiens}; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 911
Score = 49.2 bits (112), Expect = 1e-06
Identities = 28/112 (25%), Positives = 50/112 (44%)
Frame = +1
Query: 118 IIFVETKRKAENITRNIRRYGWPAVCMHGDKTQQERDEVLYQFKEGRSSILVATDVAARG 297
I++ + + + + I++ +R A H ++R + F + ++VAT G
Sbjct: 490 IVYCKFQYETDMISKYLRDNNINAKGYHSGLPAKDRVRIQESFCSNKIRVVVATVAFGMG 549
Query: 298 LDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKAKGTSYAFFSPSNSRQARDL 453
LD + VI+F P S E+Y+ IGR GR + F+ + R L
Sbjct: 550 LDKGDVGAVIHFSVPGSMEEYVQEIGRAGRDGRLSYCHLFYDNDTYLKLRSL 601
>At4g35740.2 68417.m05073 DNA helicase (RECQl3) identical to DNA
Helicase [Arabidopsis thaliana] GI:11121447; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 620
Score = 47.2 bits (107), Expect = 5e-06
Identities = 24/113 (21%), Positives = 50/113 (44%)
Frame = +1
Query: 118 IIFVETKRKAENITRNIRRYGWPAVCMHGDKTQQERDEVLYQFKEGRSSILVATDVAARG 297
II+ + ++++ ++ G + H + R VL + + I+VAT G
Sbjct: 167 IIYCLERTTCDDLSVHLSSIGISSAAYHAGLNSKMRSTVLDDWLSSKKQIIVATVAFGMG 226
Query: 298 LDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKAKGTSYAFFSPSNSRQARDLV 456
+D ++ V +F+ P S E + GR GR + S ++ + ++ L+
Sbjct: 227 IDKKDVRMVCHFNIPKSMESFYQESGRAGRDQLPSRSVLYYGVDDRKKMEYLL 279
>At4g35740.1 68417.m05072 DNA helicase (RECQl3) identical to DNA
Helicase [Arabidopsis thaliana] GI:11121447; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 713
Score = 47.2 bits (107), Expect = 5e-06
Identities = 24/113 (21%), Positives = 50/113 (44%)
Frame = +1
Query: 118 IIFVETKRKAENITRNIRRYGWPAVCMHGDKTQQERDEVLYQFKEGRSSILVATDVAARG 297
II+ + ++++ ++ G + H + R VL + + I+VAT G
Sbjct: 260 IIYCLERTTCDDLSVHLSSIGISSAAYHAGLNSKMRSTVLDDWLSSKKQIIVATVAFGMG 319
Query: 298 LDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKAKGTSYAFFSPSNSRQARDLV 456
+D ++ V +F+ P S E + GR GR + S ++ + ++ L+
Sbjct: 320 IDKKDVRMVCHFNIPKSMESFYQESGRAGRDQLPSRSVLYYGVDDRKKMEYLL 372
>At5g20320.1 68418.m02418 DEAD/DEAH box helicase, putative similar
to CAF protein [Arabidopsis thaliana] GI:6102610;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF03368:
Domain of unknown function, PF00636: RNase3 domain,
PF00035: Double-stranded RNA binding motif
Length = 1676
Score = 45.2 bits (102), Expect = 2e-05
Identities = 35/129 (27%), Positives = 58/129 (44%), Gaps = 10/129 (7%)
Frame = +1
Query: 100 DPGAKTIIFVE---TKRKAENITRNIRRY-GWPAVCMHG------DKTQQERDEVLYQFK 249
+P K IIFV T R I N+ W + + G +++ + +L +F+
Sbjct: 509 EPHMKCIIFVNRIVTARTLSCILNNLELLRSWKSDFLVGLSSGLKSMSRRSMETILKRFQ 568
Query: 250 EGRSSILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKAKGTSYAFFSPS 429
++LVAT V GLD+ VI +D P + +I GR++ + YAF S
Sbjct: 569 SKELNLLVATKVGEEGLDIQTCCLVIRYDLPETVTSFIQ---SRGRARMPQSEYAFLVDS 625
Query: 430 NSRQARDLV 456
+ + DL+
Sbjct: 626 GNEKEMDLI 634
>At5g22750.1 68418.m02657 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger domain-containing
protein similar to SP|P36607 DNA repair protein rad8
{Schizosaccharomyces pombe}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain, PF00097: Zinc finger,
C3HC4 type (RING finger)
Length = 1029
Score = 44.8 bits (101), Expect = 3e-05
Identities = 32/127 (25%), Positives = 67/127 (52%), Gaps = 5/127 (3%)
Frame = +1
Query: 28 VDVCQEHEKENKLNVLLQEIGQNQDPGAKTIIFVETKRKAENITRNIRRYGWPAVCMHGD 207
VDV + + +K+ LL+E+ + G+K+I+F + + + + R + V + G
Sbjct: 853 VDVEKNWVESSKITALLEELEGLRSSGSKSILFSQWTAFLDLLQIPLSRNNFSFVRLDGT 912
Query: 208 KTQQERDEVLYQFKEGRSSILVATDVAARGLDVD----GIKYVIN-FDYPNSSEDYIHRI 372
+QQ+R++VL +F E S +++ + A G+ ++ +V++ + P E + RI
Sbjct: 913 LSQQQREKVLKEFSEDGSILVLLMSLKAGGVGINLTAASNAFVMDPWWNPAVEEQAVMRI 972
Query: 373 GRTGRSK 393
R G++K
Sbjct: 973 HRIGQTK 979
>At1g35530.1 68414.m04411 DEAD/DEAH box helicase, putative low
similarity to RNA helicase/RNAseIII CAF protein
[Arabidopsis thaliana] GI:6102610; contains Pfam
profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1324
Score = 44.8 bits (101), Expect = 3e-05
Identities = 23/60 (38%), Positives = 36/60 (60%)
Frame = +1
Query: 208 KTQQERDEVLYQFKEGRSSILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGR 387
++Q+ + VL +F+ G +++VAT + GLD+ + VI FD S I R+GRTGR
Sbjct: 511 QSQKIQQAVLEKFRAGGFNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGR 570
>At3g02060.1 68416.m00169 DEAD/DEAH box helicase, putative similar
to C-terminal half of transcription-repair coupling
factor (TRCF) GB:Q55750 [Synechocystis PCC6803];
contains Pfam profile: helicases conserved C-terminal
domain
Length = 823
Score = 43.2 bits (97), Expect = 9e-05
Identities = 19/75 (25%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Frame = +1
Query: 199 HGDKTQQERDEVLYQFKEGRSSILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRI-G 375
HG + ++ +E + +F +G+ IL+ T++ GLD+ +I D ++++ G
Sbjct: 513 HGKQYSKQLEETMERFAQGKIKILICTNIVESGLDIQNANTIIIQDVQQFGLAQLYQLRG 572
Query: 376 RTGRSKAKGTSYAFF 420
R GR+ + +Y F+
Sbjct: 573 RVGRADKEAHAYLFY 587
>At3g03300.1 68416.m00327 DEAD/DEAH box helicase carpel
factory-related similar to RNA helicase GB:AAF03534
Length = 1317
Score = 41.9 bits (94), Expect = 2e-04
Identities = 19/58 (32%), Positives = 35/58 (60%)
Frame = +1
Query: 205 DKTQQERDEVLYQFKEGRSSILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGR 378
++T+++++E++ F+ G +I+VAT + GLDV VI FD ++ +I GR
Sbjct: 429 NQTRKKQNEIVEDFRRGLVNIIVATSILEEGLDVQSCNLVIRFDPASNICSFIQSRGR 486
>At2g01440.1 68415.m00067 ATP-dependent DNA helicase, putative
Length = 953
Score = 41.9 bits (94), Expect = 2e-04
Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 1/97 (1%)
Frame = +1
Query: 148 ENITRNIRRYGWPAVCMHGDKTQQERDEVLYQFKEGRSSILVATDVAARGLDVDGIKYVI 327
E +T+ +Y +HG +++E L +F+ G + IL++T V G+DV ++
Sbjct: 788 EIVTKKFPKYN--CGLLHGRMKSDDKEEALNKFRSGETQILLSTQVIEIGVDVPDASMMV 845
Query: 328 NFDYPNSSEDYIHRI-GRTGRSKAKGTSYAFFSPSNS 435
+ +H++ GR GR K S +NS
Sbjct: 846 VMNAERFGIAQLHQLRGRVGRGTRKSKCLLVGSSTNS 882
>At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /
CAF identical to RNA helicase/RNAseIII CAF protein
GB:AAF03534 GI:6102610 from [Arabidopsis thaliana]
Length = 1909
Score = 39.9 bits (89), Expect = 8e-04
Identities = 23/68 (33%), Positives = 37/68 (54%)
Frame = +1
Query: 208 KTQQERDEVLYQFKEGRSSILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGR 387
K+ Q +D + +F++G ++LVAT VA GLD+ V+ FD + YI GR
Sbjct: 708 KSSQMQDTIS-KFRDGHVTLLVATSVAEEGLDIRQCNVVMRFDLAKTVLAYIQ---SRGR 763
Query: 388 SKAKGTSY 411
++ G+ Y
Sbjct: 764 ARKPGSDY 771
>At5g43530.1 68418.m05322 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger domain-containing
protein similar to SP|P36607 DNA repair protein rad8
{Schizosaccharomyces pombe}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain, PF00097: Zinc finger,
C3HC4 type (RING finger)
Length = 1277
Score = 38.3 bits (85), Expect = 0.002
Identities = 33/129 (25%), Positives = 61/129 (47%), Gaps = 7/129 (5%)
Frame = +1
Query: 28 VDVCQEHEKENKLNVLLQ--EIGQNQDPGAKTIIFVETKRKAENITRNIRRYGWPAVCMH 201
VDV + ++ +K++ LL+ E + G K+I+F + + + +RR G+ +
Sbjct: 1099 VDVVKNWKESSKVSELLKCLEKIKKSGSGEKSIVFSQWTSFLDLLEIPLRRRGFEFLRFD 1158
Query: 202 GDKTQQERDEVLYQFKEGRSS--ILVATDVAARGLDVDGIKYVINFD---YPNSSEDYIH 366
G Q+ R++VL +F E + +L++ GL++ V D P E I
Sbjct: 1159 GKLAQKGREKVLKEFNETKQKTILLMSLKAGGVGLNLTAASSVFLMDPWWNPAVEEQAIM 1218
Query: 367 RIGRTGRSK 393
RI R G+ +
Sbjct: 1219 RIHRIGQKR 1227
>At1g32490.1 68414.m04009 RNA helicase, putative similar to
ATP-dependent RNA helicase #3 [Homo sapiens] GI:3107913;
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain
Length = 1044
Score = 35.9 bits (79), Expect = 0.013
Identities = 26/109 (23%), Positives = 53/109 (48%), Gaps = 1/109 (0%)
Frame = +1
Query: 7 DHNILQIVDVCQEHEKENKLNVLLQEIGQNQDPGAKTIIFVETKRKAENITRNIRRYGWP 186
D+ IV + H +E ++L+ GQ + A+ I+ K + + IR
Sbjct: 594 DYMDAAIVTILTIHVREPLGDILVFFTGQEEIETAEEIL----KHRIRGLGTKIREL--- 646
Query: 187 AVC-MHGDKTQQERDEVLYQFKEGRSSILVATDVAARGLDVDGIKYVIN 330
+C ++ + + + ++ EG +++AT++A L +DGIKYV++
Sbjct: 647 IICPIYANLPSELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVVD 695
>At5g10370.1 68418.m01203 helicase domain-containing protein / IBR
domain-containing protein / zinc finger protein-related
similar to RNA-dependent ATPase/helicase Cdc28p
[Schizosaccharomyces pombe] GI:1439562; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain, weak hit
to PF00097: Zinc finger, C3HC4 type (RING finger),
PF01485: IBR domain
Length = 1775
Score = 35.5 bits (78), Expect = 0.017
Identities = 17/48 (35%), Positives = 30/48 (62%)
Frame = +1
Query: 187 AVCMHGDKTQQERDEVLYQFKEGRSSILVATDVAARGLDVDGIKYVIN 330
A+ +HG + +E+ V +Q GR ++ AT++A L + G+KYVI+
Sbjct: 551 ALPLHGKLSFEEQFRV-FQNHPGRRKVIFATNIAETSLTIPGVKYVID 597
>At4g01020.1 68417.m00137 helicase domain-containing protein / IBR
domain-containing protein / zinc finger protein-related
similar to SP|Q14562 ATP-dependent helicase DDX8 (RNA
helicase HRH1) (DEAH-box protein 8) {Homo sapiens};
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain, PF00097: Zinc finger, C3HC4 type (RING finger),
PF01485: IBR domain
Length = 1787
Score = 35.5 bits (78), Expect = 0.017
Identities = 17/48 (35%), Positives = 29/48 (60%)
Frame = +1
Query: 187 AVCMHGDKTQQERDEVLYQFKEGRSSILVATDVAARGLDVDGIKYVIN 330
A+ +HG K E +++Q GR ++ AT++A L + G+KYVI+
Sbjct: 548 ALPLHG-KLSFEEQFMVFQNYPGRRKVIFATNIAETSLTIPGVKYVID 594
>At3g05740.1 68416.m00644 DNA helicase (RECQI1) identical to DNA
Helicase [Arabidopsis thaliana] GI:10944747
Length = 606
Score = 35.5 bits (78), Expect = 0.017
Identities = 23/105 (21%), Positives = 49/105 (46%), Gaps = 1/105 (0%)
Frame = +1
Query: 76 LQEIGQNQDPGAKTIIFVETKRKAENITRNIR-RYGWPAVCMHGDKTQQERDEVLYQFKE 252
LQE+ +++ I++ +K + ++ + + + V H ++R +V +++
Sbjct: 417 LQELLRDRFKDQSGIVYCLSKSECVDVAKFLNEKCKVKTVYYHAGVPAKQRVDVQRKWQT 476
Query: 253 GRSSILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGR 387
G I+ AT G+D +++VI+ + E Y GR GR
Sbjct: 477 GEVRIVCATIAFGMGIDKADVRFVIHNTLSKAVESYYQESGRAGR 521
>At1g12700.1 68414.m01473 helicase domain-containing protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles PF01535: PPR repeat, PF00271:
Helicase conserved C-terminal domain
Length = 828
Score = 35.1 bits (77), Expect = 0.023
Identities = 21/80 (26%), Positives = 35/80 (43%)
Frame = +1
Query: 166 IRRYGWPAVCMHGDKTQQERDEVLYQFKEGRSSILVATDVAARGLDVDGIKYVINFDYPN 345
I G + ++ D + R VL +FK +LV ++ GL+ +++ + P
Sbjct: 635 IEARGMNSAELNRDLRKLRRSSVLKKFKNRDVRVLVTNELLTWGLEDAECDLMVDLELPT 694
Query: 346 SSEDYIHRIGRTGRSKAKGT 405
+ Y HR GR R K T
Sbjct: 695 DAVHYAHRAGRMRRPGRKMT 714
>At2g35340.1 68415.m04333 RNA helicase, putative similar to
ATP-dependent RNA helicase #3 [Homo sapiens] GI:3107913;
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain
Length = 1110
Score = 34.3 bits (75), Expect = 0.040
Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Frame = +1
Query: 103 PGAKTIIFVET--KRKAENITRNIRRYGWPAVC-MHGDKTQQERDEVLYQFKEGRSSILV 273
PG + I VE K K + IR +C ++ + + + ++ EG +++
Sbjct: 686 PGQEEIEAVEENLKHKIRGLGTKIREL---IICPIYANLPSELQAKIFEPTPEGARKVVL 742
Query: 274 ATDVAARGLDVDGIKYVIN 330
AT++A L +DGIKYV++
Sbjct: 743 ATNIAETSLTIDGIKYVVD 761
>At3g12810.1 68416.m01598 SNF2 domain-containing protein / helicase
domain-containing protein similar to transcriptional
activator SRCAP [Homo sapiens] GI:5106572; contains Pfam
profiles PF00271: Helicase conserved C-terminal domain,
PF00176: SNF2 family N-terminal domain
Length = 2055
Score = 33.1 bits (72), Expect = 0.093
Identities = 26/115 (22%), Positives = 51/115 (44%), Gaps = 8/115 (6%)
Frame = +1
Query: 61 KLNVLLQEIGQNQDPGAKTIIFVETKRKAENITRNIRRYGWPAVCMHGDKTQQERDEVLY 240
KL L + + + G + +IF + + + + I YG+ + + G +ER ++
Sbjct: 1076 KLQELAMLLRKLKFGGHRALIFTQMTKMLDVLEAFINLYGYTYMRLDGSTPPEERQTLMQ 1135
Query: 241 QFKEGRSSIL--VATDVAARGLDVDGIKYVINFD------YPNSSEDYIHRIGRT 381
+F L ++T G+++ G VI +D ++D HRIG+T
Sbjct: 1136 RFNTNPKIFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQT 1190
>At4g16680.1 68417.m02519 RNA helicase, putative similar to
SP|Q14562 ATP-dependent helicase DDX8 (RNA helicase
HRH1) (DEAH-box protein 8) {Homo sapiens}; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain
Length = 883
Score = 31.9 bits (69), Expect = 0.21
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = +1
Query: 250 EGRSSILVATDVAARGLDVDGIKYVINFDY 339
+G +++AT++A L +DG+KYVI+ Y
Sbjct: 487 KGTRKVVLATNIAETSLTIDGVKYVIDPGY 516
>At5g13010.1 68418.m01491 RNA helicase, putative similar to DEAH-box
RNA helicase [Chlamydomonas reinhardtii] GI:12044832;
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain
Length = 1226
Score = 31.5 bits (68), Expect = 0.28
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +1
Query: 247 KEGRSSILVATDVAARGLDVDGIKYVINFDY 339
++G +VAT++A L VDGI YVI+ Y
Sbjct: 797 EDGARKCIVATNIAETSLTVDGIYYVIDTGY 827
>At3g26560.1 68416.m03315 ATP-dependent RNA helicase, putative
similar to SP|Q14562 ATP-dependent helicase DDX8 (RNA
helicase HRH1) (DEAH-box protein 8) {Homo sapiens};
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain, PF00575: S1 RNA binding domain
Length = 1168
Score = 31.5 bits (68), Expect = 0.28
Identities = 22/102 (21%), Positives = 47/102 (46%)
Frame = +1
Query: 25 IVDVCQEHEKENKLNVLLQEIGQNQDPGAKTIIFVETKRKAENITRNIRRYGWPAVCMHG 204
++ V Q H E + ++L+ GQ + A ++ K +N+ I + ++
Sbjct: 711 LITVLQIHLTEPEGDILVFLTGQEEIDSACQSLYERMKGLGKNVPELI------ILPVYS 764
Query: 205 DKTQQERDEVLYQFKEGRSSILVATDVAARGLDVDGIKYVIN 330
+ + + G+ ++VAT++A L +DGI YV++
Sbjct: 765 ALPSEMQSRIFDPPPPGKRKVVVATNIAEASLTIDGIYYVVD 806
>At5g22980.1 68418.m02686 serine carboxypeptidase III, putative
similar to serine carboxypeptidase III from Oryza sativa
SP|P37891, Matricaria chamomilla GI:6960455, Hordeum
vulgare SP|P21529, Triticum aestivum SP|P11515; contains
Pfam profile PF0450 serine carboxypeptidase
Length = 505
Score = 31.1 bits (67), Expect = 0.37
Identities = 18/51 (35%), Positives = 25/51 (49%)
Frame = -2
Query: 222 FLLCFVTVHAHSWPSISSDISGNVLRFSFSFNKYNGLCTRVLVLPNLLKKY 70
F L + + + SW S S I N FS S N +G R++ NL+ KY
Sbjct: 6 FFLFMLFIFSQSWLSTSKRILNNPSVFSSSLNFSSGNAERLIKSFNLMPKY 56
>At3g43920.1 68416.m04701 ribonuclease III family protein similar to
RNA helicase/RNAseIII CAF protein [Arabidopsis thaliana]
GI:6102610; contains Pfam profiles PF02170: PAZ domain,
PF00636: RNase3 domain
Length = 1531
Score = 31.1 bits (67), Expect = 0.37
Identities = 20/76 (26%), Positives = 33/76 (43%)
Frame = +1
Query: 214 QQERDEVLYQFKEGRSSILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSK 393
Q+ + E+ F+ G+ ++L TDV G V ++ FD P + Y +S
Sbjct: 407 QKMQIEIPDLFQHGKVNLLFITDVVEEGFQVPDCSCMVCFDLPKTMCSYSQSQKHAKQSN 466
Query: 394 AKGTSYAFFSPSNSRQ 441
+K S F N +Q
Sbjct: 467 SK--SIMFLERGNPKQ 480
>At1g26370.1 68414.m03217 RNA helicase, putative similar to
SP|Q14562 ATP-dependent helicase DDX8 (RNA helicase
HRH1) (DEAH-box protein 8) {Homo sapiens}; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain
Length = 717
Score = 31.1 bits (67), Expect = 0.37
Identities = 22/102 (21%), Positives = 51/102 (50%)
Frame = +1
Query: 25 IVDVCQEHEKENKLNVLLQEIGQNQDPGAKTIIFVETKRKAENITRNIRRYGWPAVCMHG 204
+V + Q H +E ++L+ GQ++ + ++ + + +NI + R+ P
Sbjct: 279 LVTIFQIHFEEKPGDILVFLTGQDEIESVERLV----QERLQNIPEDKRKL-LPLAIFSA 333
Query: 205 DKTQQERDEVLYQFKEGRSSILVATDVAARGLDVDGIKYVIN 330
++Q+ +V G +++AT++A + + GI+YVI+
Sbjct: 334 LPSEQQM-KVFAPAPTGFRKVILATNIAETSITIPGIRYVID 374
>At1g63500.1 68414.m07180 protein kinase-related low similarity to
protein kinase [Arabidopsis thaliana]; contains Pfam
profile: PF00069 Eukaryotic protein kinase domain
Length = 422
Score = 29.9 bits (64), Expect = 0.86
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +2
Query: 170 DDMDGQLCACTVTKHSKKGMKYYTNLKRVVPVYL*QLMLLPEVLMW 307
DD + +L + K+S+ G Y TNL P YL + PE +M+
Sbjct: 126 DDSNPRLSCFGLMKNSRDGKSYSTNLAFTPPEYLRTGRVTPESVMY 171
>At5g44240.1 68418.m05412 haloacid dehalogenase-like hydrolase
family protein similar to Potential
phospholipid-transporting ATPase (EC 3.6.3.1) from {Mus
musculus} SP|P70704, {Bos taurus} SP|Q29449; contains
InterPro accession IPR005834: Haloacid dehalogenase-like
hydrolase
Length = 1107
Score = 29.5 bits (63), Expect = 1.1
Identities = 20/67 (29%), Positives = 29/67 (43%)
Frame = -2
Query: 273 YKYTGTTLFKLV*YFIPFLLCFVTVHAHSWPSISSDISGNVLRFSFSFNKYNGLCTRVLV 94
Y Y T ++ L+CF+ + S S +SG L S S YN T V V
Sbjct: 801 YSYNRTAFLSQYSFYKSLLICFIQIFF----SFISGVSGTSLFNSVSLMAYNVFYTSVPV 856
Query: 93 LPNLLKK 73
L +++ K
Sbjct: 857 LVSVIDK 863
>At5g24500.1 68418.m02887 expressed protein
Length = 334
Score = 29.5 bits (63), Expect = 1.1
Identities = 26/87 (29%), Positives = 44/87 (50%)
Frame = +2
Query: 8 IITSFKL*MFVKNMKKKTN*MYFFKRLGKTKTLVQRPLYLLKLKEKRRTLPEISDDMDGQ 187
I TSFK+ K + ++ N ++ GK++ + + + K K+K+R ++ DD DG
Sbjct: 206 IDTSFKIWKSEKLVFRRRNVWKVREKKGKSRVVSKLKKLMKKKKKKKRKCDDVDDD-DGG 264
Query: 188 LCACTVTKHSKKGMKYYTNLKRVVPVY 268
+ K SKK MK T++ P Y
Sbjct: 265 I----ARKKSKK-MKISTSVSDNNPRY 286
>At5g08110.1 68418.m00946 DEAD/DEAH box helicase, putative several
putative ATP-dependent helicases
Length = 1058
Score = 28.7 bits (61), Expect = 2.0
Identities = 18/77 (23%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
Frame = +1
Query: 202 GDKTQQERDEVLYQFKEGRSSILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRT 381
G ++R ++ G+ + AT+ G+DV I ++ +P S + GR+
Sbjct: 611 GGYIAEDRRKIESDLFGGKLCGIAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRS 670
Query: 382 GRSKAKGTS--YAFFSP 426
GR + + AF P
Sbjct: 671 GRRQKPSLAVYVAFLGP 687
>At5g41260.1 68418.m05015 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 487
Score = 28.3 bits (60), Expect = 2.6
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +2
Query: 170 DDMDGQLCACTVTKHSKKGMKYYTNLKRVVPVYL*QLMLLPEVLMW 307
DD + +L + K+S+ G Y TNL P YL + PE +++
Sbjct: 191 DDANPRLSCFGLMKNSRDGKSYSTNLAFTPPEYLRTGRVTPESVIY 236
>At4g35230.1 68417.m05007 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 512
Score = 27.9 bits (59), Expect = 3.5
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +2
Query: 170 DDMDGQLCACTVTKHSKKGMKYYTNLKRVVPVYL*QLMLLPE 295
+D D +L + K+S+ G Y TNL P YL + PE
Sbjct: 208 EDGDPRLSCFGLMKNSRDGKSYSTNLAYTPPEYLRNGRVTPE 249
>At1g58050.1 68414.m06579 helicase domain-containing protein contains
similarity to SP|P24785 Dosage compensation regulator
(Male-less protein) (No action potential protein)
{Drosophila melanogaster}; contains Pfam profiles
PF04408: Helicase associated domain (HA2), PF00271:
Helicase conserved C-terminal domain
Length = 1417
Score = 27.9 bits (59), Expect = 3.5
Identities = 10/45 (22%), Positives = 25/45 (55%)
Frame = +1
Query: 196 MHGDKTQQERDEVLYQFKEGRSSILVATDVAARGLDVDGIKYVIN 330
+H E+ +V + +G +++AT++A + ++ + YVI+
Sbjct: 919 LHSSIASTEQKKVFLRPPKGIRKVIIATNIAETSITIEDVVYVID 963
>At1g33390.1 68414.m04133 helicase domain-containing protein similar
to kurz protein [Drosophila melanogaster] GI:5869803;
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain
Length = 1237
Score = 27.9 bits (59), Expect = 3.5
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = +1
Query: 265 ILVATDVAARGLDVDGIKYVIN 330
++VAT+VA L + GIKYV++
Sbjct: 675 VVVATNVAETSLTIPGIKYVVD 696
>At5g59010.1 68418.m07392 protein kinase-related low similarity to
serine/threonine/tyrosine-specific protein kinase APK1,
Arabidopsis thaliana, SP|Q06548 PIR:S28615; contains
Pfam profile: PF00069 Eukaryotic protein kinase domain
Length = 489
Score = 27.5 bits (58), Expect = 4.6
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = +2
Query: 173 DMDG--QLCACTVTKHSKKGMKYYTNLKRVVPVYL*QLMLLPEVLMW 307
D DG +L + K+S+ G Y TNL P YL ++PE +++
Sbjct: 186 DQDGNPRLSCFGLMKNSRDGKSYSTNLAFTPPEYLRTGRVIPESVVY 232
>At4g01800.1 68417.m00237 preprotein translocase secA subunit,
putative similar to preprotein translocase secA subunit,
chloroplast [precursor] SP:Q9SYI0 from [Arabidopsis
thaliana]; non-consensus GA donor splice site at exon 4
Length = 1022
Score = 27.5 bits (58), Expect = 4.6
Identities = 14/82 (17%), Positives = 37/82 (45%)
Frame = +1
Query: 61 KLNVLLQEIGQNQDPGAKTIIFVETKRKAENITRNIRRYGWPAVCMHGDKTQQERDEVLY 240
K ++ EI + G ++ + +++ +++ +R G ++ ER+ +
Sbjct: 489 KWRAVVVEISRMHKTGRAVLVGTTSVEQSDELSQLLREAGITHEVLNAKPENVEREAEIV 548
Query: 241 QFKEGRSSILVATDVAARGLDV 306
++ +AT++A RG D+
Sbjct: 549 AQSGRLGAVTIATNMAGRGTDI 570
>At1g50990.1 68414.m05732 protein kinase-related low similarity to
SP|Q06548|APKA_ARATH Protein kinase APK1A Arabidopsis
thaliana; contains Pfam profile: PF00069: Eukaryotic
protein kinase domain; contains non-consensus (GC)
splice site at intron 6
Length = 507
Score = 27.5 bits (58), Expect = 4.6
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = +2
Query: 128 LKLKEKRRTLPEISDDMDGQLCACTV-TKHSKKGMKYYTNLKRVVPVYL*QLMLLPEVLM 304
LKL T + D+ +C K+SK G + TNL P YL L+PE ++
Sbjct: 195 LKLYHDLNTCRVLFDENGSPRLSCFGWMKNSKDGKNFSTNLAYTPPEYLRSGTLIPESVV 254
Query: 305 W 307
+
Sbjct: 255 F 255
>At1g27900.1 68414.m03419 RNA helicase, putative similar to
SP|Q14562 ATP-dependent helicase DDX8 (RNA helicase
HRH1) (DEAH-box protein 8) {Homo sapiens}; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain
Length = 700
Score = 27.5 bits (58), Expect = 4.6
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +1
Query: 268 LVATDVAARGLDVDGIKYVINFDY 339
+V+T++A L VDG+ YVI+ Y
Sbjct: 277 IVSTNIAETSLTVDGVVYVIDSGY 300
>At5g17010.1 68418.m01992 sugar transporter family protein similar
to D-xylose proton-symporter [Lactobacillus brevis]
GI:2895856; contains Pfam profile PF00083: major
facilitator superfamily protein
Length = 503
Score = 27.1 bits (57), Expect = 6.1
Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 3/27 (11%)
Frame = -3
Query: 293 LAATSVATSILERPSL---NWYNTSSL 222
+ ATS AT L+ PSL +WYN SS+
Sbjct: 65 IGATSCATISLQSPSLSGISWYNLSSV 91
>At3g62310.1 68416.m07000 RNA helicase, putative similar to
SP|P53131 Pre-mRNA splicing factor RNA helicase PRP43
(Helicase JA1) {Saccharomyces cerevisiae}; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain
Length = 726
Score = 27.1 bits (57), Expect = 6.1
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = +1
Query: 265 ILVATDVAARGLDVDGIKYVIN 330
I+V+T++A L +DGI YVI+
Sbjct: 344 IVVSTNIAETSLTIDGIVYVID 365
>At3g19020.1 68416.m02415 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 956
Score = 27.1 bits (57), Expect = 6.1
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Frame = -2
Query: 180 SISSDISG--NVLRFSFSFNKYNGLCT-RVLVLPNLLKKYI*FVFF 52
S+ S +SG NV + FS+NK+ G T + LP L + FF
Sbjct: 301 SLPSTLSGLANVEQMDFSYNKFTGFVTDNICKLPKLSNFTFSYNFF 346
>At2g47250.1 68415.m05900 RNA helicase, putative similar to
SP|P53131 Pre-mRNA splicing factor RNA helicase PRP43
(Helicase JA1) {Saccharomyces cerevisiae}; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain
Length = 729
Score = 27.1 bits (57), Expect = 6.1
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = +1
Query: 265 ILVATDVAARGLDVDGIKYVIN 330
I+V+T++A L +DGI YVI+
Sbjct: 348 IVVSTNIAETSLTIDGIVYVID 369
>At2g33320.1 68415.m04084 C2 domain-containing protein low
similarity to splicing coactivator subunit SRm300 [Homo
sapiens] GI:6649242; contains Pfam profile PF00168: C2
domain
Length = 602
Score = 27.1 bits (57), Expect = 6.1
Identities = 9/17 (52%), Positives = 15/17 (88%)
Frame = +2
Query: 368 ELVGQEDPKLKELHMHS 418
+L+G+EDP L+ LH++S
Sbjct: 170 DLLGEEDPNLQNLHLNS 186
>At3g21300.1 68416.m02691 RNA methyltransferase family protein
contains TIGRfam TIGR00479: RNA methyltransferase, TrmA
family
Length = 554
Score = 26.6 bits (56), Expect = 8.1
Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
Frame = +1
Query: 238 YQFKEGRSSILVATDVAARG---LDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKAKGTS 408
Y K G + LV + +G VDG YV+ D E ++ R+ R S A+ T
Sbjct: 65 YYPKRGETVELVCESLGFKGKGICKVDGTGYVVMCDRALPGERFLGRVTRRKGSYAEVTK 124
Query: 409 YAFFSP 426
SP
Sbjct: 125 MKTISP 130
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.317 0.133 0.384
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,562,255
Number of Sequences: 28952
Number of extensions: 217752
Number of successful extensions: 764
Number of sequences better than 10.0: 108
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 747
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 762235320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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