Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_D19
(421 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein S6|Schizo... 190 6e-50
SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein S6|Schizosacch... 190 8e-50
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po... 26 2.1
SPAC977.12 |||L-asparaginase |Schizosaccharomyces pombe|chr 1|||... 26 2.7
SPBPB8B6.05c |||L-asparaginase |Schizosaccharomyces pombe|chr 2|... 26 2.7
SPAC6B12.05c |||chromatin remodeling complex subunit |Schizosacc... 25 6.3
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 24 8.4
SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha... 24 8.4
>SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein
S6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 239
Score = 190 bits (464), Expect = 6e-50
Identities = 88/130 (67%), Positives = 103/130 (79%)
Frame = +2
Query: 32 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 211
MKLN+SYPA G QKL E+ D+ +LR+F EKRMG EV D +G E+ GYV ++ GGNDKQG
Sbjct: 1 MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQG 60
Query: 212 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 391
FPM QGVL RVRLL+ GH CYRPRRDGERKRKSVRGCIV +L+VLAL IV++G Q+
Sbjct: 61 FPMFQGVLLPHRVRLLLRAGHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIVKQGEQD 120
Query: 392 IPGLTDGEVP 421
IPGLTD VP
Sbjct: 121 IPGLTDVTVP 130
>SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein
S6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 239
Score = 190 bits (463), Expect = 8e-50
Identities = 87/130 (66%), Positives = 103/130 (79%)
Frame = +2
Query: 32 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 211
MKLN+SYPA G QKL E+ D+ +LR+F EKRMG EV D +G E+ GYV ++ GGNDKQG
Sbjct: 1 MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQG 60
Query: 212 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 391
FPM QGVL RVRLL+ GH CYRPRRDGERKRKSVRGCIV +L+VLAL I+++G Q+
Sbjct: 61 FPMFQGVLLPHRVRLLLRAGHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIIKQGEQD 120
Query: 392 IPGLTDGEVP 421
IPGLTD VP
Sbjct: 121 IPGLTDVTVP 130
>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 26.2 bits (55), Expect = 2.1
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -2
Query: 276 EWPFDIKRRTRLLVRTPCFIGKPCLSLP 193
EWP +K +LLVRT + PC + P
Sbjct: 26 EWPLLLKNFDKLLVRTGHYTPIPCGNNP 53
>SPAC977.12 |||L-asparaginase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 356
Score = 25.8 bits (54), Expect = 2.7
Identities = 11/41 (26%), Positives = 20/41 (48%)
Frame = +2
Query: 2 HEGSKGLIAVMKLNVSYPATGCQKLFEVVDEHKLRIFYEKR 124
H G+KGL+ S+ G + + ++ EH + + Y R
Sbjct: 269 HLGAKGLVLAAMGATSWTDDGNEVISSLIREHNIPVVYSHR 309
>SPBPB8B6.05c |||L-asparaginase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 356
Score = 25.8 bits (54), Expect = 2.7
Identities = 11/41 (26%), Positives = 20/41 (48%)
Frame = +2
Query: 2 HEGSKGLIAVMKLNVSYPATGCQKLFEVVDEHKLRIFYEKR 124
H G+KGL+ S+ G + + ++ EH + + Y R
Sbjct: 269 HLGAKGLVLAAMGATSWTDDGNEVISSLIREHNIPVVYSHR 309
>SPAC6B12.05c |||chromatin remodeling complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 295
Score = 24.6 bits (51), Expect = 6.3
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2
Query: 254 LLMSKGHSCYRPRRDGERKRKSVRGCIVD 340
++ SK +S +P+ G KRK+ R +VD
Sbjct: 97 VVTSKKNSRSKPKNGGASKRKASRRTVVD 125
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 24.2 bits (50), Expect = 8.4
Identities = 20/86 (23%), Positives = 37/86 (43%)
Frame = +2
Query: 158 DEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIV 337
DEW GG DK G ++ +L R+ ++ + R ++D E++ ++
Sbjct: 1055 DEWFNTPFANTGGQDKIGLNEEEALLIIKRLHKVL-RPFLFRRLKKDVEKELPDKVEKVI 1113
Query: 338 DANLSVLALVIVRKGAQEIPGLTDGE 415
LS L L + ++ + DGE
Sbjct: 1114 KCPLSGLQLKLYQQMKKHGMLFVDGE 1139
>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 720
Score = 24.2 bits (50), Expect = 8.4
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +2
Query: 74 LFEVVDEHKLRIFYEKRMGAEVDADLLGDEW 166
+FE V EH L Y+K + ++D L+ W
Sbjct: 349 VFEYVLEHTLPHLYQKIIELDMDLKLITINW 379
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,692,914
Number of Sequences: 5004
Number of extensions: 32081
Number of successful extensions: 66
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 148351622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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