Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_D19
(421 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_03_0207 - 15455163-15455389,15455623-15455895,15455991-154560... 177 4e-45
07_03_1309 + 25669394-25669399,25669520-25669584,25670543-256706... 174 2e-44
11_04_0329 - 16442298-16443734 29 2.0
03_02_0752 - 10922456-10922644,10922719-10922796,10922888-109230... 29 2.0
10_01_0171 + 1917520-1918056,1919201-1919336,1921873-1922060,192... 27 8.1
09_06_0032 + 20353789-20353963,20354240-20354340,20354426-203545... 27 8.1
08_02_1482 - 27428208-27428514,27428605-27428906,27431176-274322... 27 8.1
01_07_0254 + 42318181-42319471,42319581-42319792,42319909-423201... 27 8.1
>03_03_0207 -
15455163-15455389,15455623-15455895,15455991-15456099,
15456186-15456243,15457002-15457066,15457190-15457195
Length = 245
Score = 177 bits (430), Expect = 4e-45
Identities = 82/132 (62%), Positives = 102/132 (77%), Gaps = 2/132 (1%)
Frame = +2
Query: 32 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 211
MK N++ P TGCQK E+ D+ KLR FY+KR+ EV D LG+E+KGYV ++ GG DKQG
Sbjct: 1 MKFNIANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60
Query: 212 FPMKQGVLTNSRVRLLMSKGHSCYR--PRRDGERKRKSVRGCIVDANLSVLALVIVRKGA 385
FPMKQGVLT+ RVRLL+ +G C+R RRDGER+RKSVRGCIV +LSV+ LVIV+KG
Sbjct: 61 FPMKQGVLTSGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKKGD 120
Query: 386 QEIPGLTDGEVP 421
++PGLTD E P
Sbjct: 121 NDLPGLTDTEKP 132
>07_03_1309 +
25669394-25669399,25669520-25669584,25670543-25670600,
25670683-25670791,25670872-25671144,25671348-25671589
Length = 250
Score = 174 bits (424), Expect = 2e-44
Identities = 81/132 (61%), Positives = 101/132 (76%), Gaps = 2/132 (1%)
Frame = +2
Query: 32 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 211
MK N++ P TGCQK E+ D+ KLR F++KR+ EV D LG+E+KGYV ++ GG DKQG
Sbjct: 1 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60
Query: 212 FPMKQGVLTNSRVRLLMSKGHSCYR--PRRDGERKRKSVRGCIVDANLSVLALVIVRKGA 385
FPMKQGVLT RVRLL+ +G C+R RRDGER+RKSVRGCIV +LSV+ LVIV+KG
Sbjct: 61 FPMKQGVLTAGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKKGE 120
Query: 386 QEIPGLTDGEVP 421
++PGLTD E P
Sbjct: 121 NDLPGLTDTEKP 132
>11_04_0329 - 16442298-16443734
Length = 478
Score = 28.7 bits (61), Expect = 2.0
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = -2
Query: 393 ISCAPLRTMTRAKTERLASTMQPRTDLRFLSPSRRG 286
+ CAP M LAS+ P + LRF S RRG
Sbjct: 77 LPCAPNSFMLNITLRALASSPDPASALRFFSLLRRG 112
>03_02_0752 -
10922456-10922644,10922719-10922796,10922888-10923016,
10923105-10923152,10923243-10923333,10923517-10923648,
10923869-10924086,10925121-10925271,10925360-10926009,
10926715-10926786,10926938-10926985,10927105-10927242,
10927750-10927756,10928064-10928212
Length = 699
Score = 28.7 bits (61), Expect = 2.0
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -1
Query: 121 LFIEDTELVLIHHFK*LLTSRCRV*NVQLHDCDQSL 14
LF++ T V + F L RC V + +LH C Q+L
Sbjct: 76 LFLDKTMDVALDSFDNLFCRRCLVFDCRLHGCSQNL 111
>10_01_0171 +
1917520-1918056,1919201-1919336,1921873-1922060,
1922491-1922694,1923913-1924425
Length = 525
Score = 26.6 bits (56), Expect = 8.1
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +2
Query: 176 VLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSC 280
VLR+ GND ++ G + NS + ++ + H C
Sbjct: 301 VLRIENGNDGSMITIQHGQVINSGIWIIKTPFHIC 335
>09_06_0032 +
20353789-20353963,20354240-20354340,20354426-20354560,
20354633-20354714,20354829-20354896,20354984-20355073,
20355133-20355257,20355384-20355717,20355841-20355957,
20356058-20356485,20356564-20356813,20356944-20357194,
20357278-20357587
Length = 821
Score = 26.6 bits (56), Expect = 8.1
Identities = 18/56 (32%), Positives = 28/56 (50%)
Frame = +2
Query: 146 DLLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKR 313
DL G E + AG K+G + + +LT +V +SKG + + P RD + R
Sbjct: 221 DLAGSE-RASQTASAGMRLKEGSHINRSLLTLGKVIRQLSKGRNGHIPYRDSKLTR 275
>08_02_1482 -
27428208-27428514,27428605-27428906,27431176-27432228,
27432305-27432421,27432510-27432843,27433064-27433188,
27433408-27433475,27433555-27433636,27433753-27433866,
27433942-27434042,27434145-27434234,27434615-27434819
Length = 965
Score = 26.6 bits (56), Expect = 8.1
Identities = 18/56 (32%), Positives = 28/56 (50%)
Frame = +2
Query: 146 DLLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKR 313
DL G E + AG K+G + + +LT +V +SKG + + P RD + R
Sbjct: 224 DLAGSE-RASQTASAGVRLKEGSHINRSLLTLGKVVRQLSKGRNGHIPYRDSKLTR 278
>01_07_0254 +
42318181-42319471,42319581-42319792,42319909-42320132,
42320232-42321009
Length = 834
Score = 26.6 bits (56), Expect = 8.1
Identities = 12/20 (60%), Positives = 16/20 (80%), Gaps = 1/20 (5%)
Frame = +2
Query: 68 QKLF-EVVDEHKLRIFYEKR 124
+KL+ E+ DE KLRI YEK+
Sbjct: 494 KKLYQEIKDEEKLRILYEKK 513
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,778,735
Number of Sequences: 37544
Number of extensions: 246879
Number of successful extensions: 609
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 607
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 766563072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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