Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_D19
         (421 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48378| Best HMM Match : Ribosomal_S6e (HMM E-Value=0)              171   2e-43
SB_47786| Best HMM Match : Ank (HMM E-Value=4.4e-30)                   37   0.006
SB_54546| Best HMM Match : zf-CCHC (HMM E-Value=0.0024)                29   1.6  
SB_48944| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.3  
SB_31395| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.3  
SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.3  

>SB_48378| Best HMM Match : Ribosomal_S6e (HMM E-Value=0)
          Length = 212

 Score =  171 bits (417), Expect = 2e-43
 Identities = 75/96 (78%), Positives = 85/96 (88%)
 Frame = +2

Query: 134 EVDADLLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKR 313
           EV  + LGDEWKGYV R+ GGNDKQGFPMKQG++TN RVRLL+SKGHSCYRPRR GERKR
Sbjct: 2   EVSGECLGDEWKGYVFRITGGNDKQGFPMKQGIMTNGRVRLLLSKGHSCYRPRRTGERKR 61

Query: 314 KSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGEVP 421
           KSVRGCIVD+ LSVL+LVIV+KG Q+IPGLTD  +P
Sbjct: 62  KSVRGCIVDSQLSVLSLVIVKKGEQDIPGLTDNTIP 97


>SB_47786| Best HMM Match : Ank (HMM E-Value=4.4e-30)
          Length = 796

 Score = 37.1 bits (82), Expect = 0.006
 Identities = 18/57 (31%), Positives = 28/57 (49%)
 Frame = -1

Query: 280 ARVAF*HQETYTAVSQDSLFHREALLVVTAGNTENITFPFVA*KICINFSAHTLFIE 110
           A V    QE   A+  D L H ++L V+T  + E+++ P +   +      HTL IE
Sbjct: 250 AAVTLGEQEADAAIGHDPLLHGKSLFVITTSDPEDVSLPLIPQALPRYLHGHTLVIE 306


>SB_54546| Best HMM Match : zf-CCHC (HMM E-Value=0.0024)
          Length = 848

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 13/36 (36%), Positives = 25/36 (69%)
 Frame = +3

Query: 237 LTAVYVS*CQKATLATDHVVTVRGNASLFVVALLML 344
           L+++  + C KATLA D+V++ +GN+   ++  L+L
Sbjct: 472 LSSMLSNGCTKATLACDNVISEKGNSFQRILGSLIL 507


>SB_48944| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 103

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +2

Query: 266 KGHSCYRPRRDGERKRKSVRGC 331
           KGH CY  +  G  KR+  R C
Sbjct: 18  KGHGCYAKQLSGFDKRQLTRSC 39


>SB_31395| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 106

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +2

Query: 266 KGHSCYRPRRDGERKRKSVRGC 331
           KGH CY  +  G  KR+  R C
Sbjct: 18  KGHGCYAKQLSGFDKRQLTRSC 39


>SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5659

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -2

Query: 408  SVSPGISCAPLRTMTRAKTERLASTMQPRTDL 313
            +V+PG + AP  T+    T  L ST+ P T +
Sbjct: 3512 TVTPGSTAAPETTVAPGTTVALESTVAPETSI 3543


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,514,164
Number of Sequences: 59808
Number of extensions: 278053
Number of successful extensions: 636
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 789494848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)