Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_D19
         (421 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132902-1|CAB81996.1|  246|Caenorhabditis elegans Hypothetical ...   206   7e-54
Z81044-5|CAE17706.2|  460|Caenorhabditis elegans Hypothetical pr...    28   3.1  
Z77133-7|CAB00865.2|  735|Caenorhabditis elegans Hypothetical pr...    27   5.5  
AL008868-4|CAO82021.1|  735|Caenorhabditis elegans Hypothetical ...    27   5.5  
AF067942-9|AAG45572.1|  347|Caenorhabditis elegans Hypothetical ...    27   5.5  
Z82077-9|CAB04941.1|  259|Caenorhabditis elegans Hypothetical pr...    27   7.2  
U21323-1|AAM22050.1|  542|Caenorhabditis elegans Hypothetical pr...    27   7.2  
U00047-13|AAY43978.1|  301|Caenorhabditis elegans Hypothetical p...    27   7.2  
AL032650-2|CAA21705.1|  259|Caenorhabditis elegans Hypothetical ...    27   7.2  
Z82052-5|CAB04828.1|  382|Caenorhabditis elegans Hypothetical pr...    26   9.5  
Z54216-9|CAN86906.1|  155|Caenorhabditis elegans Hypothetical pr...    26   9.5  
Z54216-8|CAA90948.1|  101|Caenorhabditis elegans Hypothetical pr...    26   9.5  
Z54216-7|CAI46586.1|  299|Caenorhabditis elegans Hypothetical pr...    26   9.5  
Z54216-6|CAB76416.2|  319|Caenorhabditis elegans Hypothetical pr...    26   9.5  
Z14092-9|CAA78474.1| 1429|Caenorhabditis elegans Hypothetical pr...    26   9.5  
M12069-1|AAA70191.1| 1429|Caenorhabditis elegans protein ( C.ele...    26   9.5  

>AL132902-1|CAB81996.1|  246|Caenorhabditis elegans Hypothetical
           protein Y71A12B.1 protein.
          Length = 246

 Score =  206 bits (502), Expect = 7e-54
 Identities = 94/130 (72%), Positives = 109/130 (83%)
 Frame = +2

Query: 32  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 211
           M+LN +YPATG QK FEV +E KLR+F+EKRM  EV  D LGDEWKGYV+R+ GGNDKQG
Sbjct: 1   MRLNFAYPATGLQKSFEVDEEKKLRLFFEKRMSQEVAIDALGDEWKGYVVRIGGGNDKQG 60

Query: 212 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 391
           FPMKQG+LTN RVRLL+ KG SCYR R++GERKRKSVRGCIVDAN+S L+LVIV+KG  E
Sbjct: 61  FPMKQGILTNGRVRLLLKKGQSCYRERKNGERKRKSVRGCIVDANMSALSLVIVKKGDGE 120

Query: 392 IPGLTDGEVP 421
           I GLTD  +P
Sbjct: 121 IEGLTDSVLP 130


>Z81044-5|CAE17706.2|  460|Caenorhabditis elegans Hypothetical
           protein C30H6.11 protein.
          Length = 460

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 16/57 (28%), Positives = 28/57 (49%)
 Frame = -2

Query: 417 TSPSVSPGISCAPLRTMTRAKTERLASTMQPRTDLRFLSPSRRGL*QEWPFDIKRRT 247
           T+P+ +P  +  P  T T AKT + ++T   +T     +P+      + PFD  + T
Sbjct: 274 TTPTTTPTTTTTPTTTTTTAKTTK-STTTTTKTTKTTSTPTTTTTTPKTPFDTSKCT 329


>Z77133-7|CAB00865.2|  735|Caenorhabditis elegans Hypothetical
           protein K03A11.1 protein.
          Length = 735

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -3

Query: 173 NLSIRRLEDLHQLQRPYAFHRRY 105
           N+ +RRLE+L  ++RP   H R+
Sbjct: 227 NMVVRRLEELGAIERPLNLHVRF 249


>AL008868-4|CAO82021.1|  735|Caenorhabditis elegans Hypothetical
           protein K03A11.1 protein.
          Length = 735

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -3

Query: 173 NLSIRRLEDLHQLQRPYAFHRRY 105
           N+ +RRLE+L  ++RP   H R+
Sbjct: 227 NMVVRRLEELGAIERPLNLHVRF 249


>AF067942-9|AAG45572.1|  347|Caenorhabditis elegans Hypothetical
           protein ZK6.2 protein.
          Length = 347

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 249 TRLLVRTPCFIGKPCLSLPPATRR 178
           TR +    CF+G+ C   PP TR+
Sbjct: 37  TRTMPIKKCFLGENCFERPPFTRK 60


>Z82077-9|CAB04941.1|  259|Caenorhabditis elegans Hypothetical
           protein W09C5.1 protein.
          Length = 259

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -3

Query: 131 RPYAFHRRYGACAHPPLQITSDIPLPGMKRSTS 33
           RP     +     HP LQ T  +P+ G+K++ S
Sbjct: 171 RPMGLRFKKAHVTHPELQTTFHLPIVGVKKNPS 203


>U21323-1|AAM22050.1|  542|Caenorhabditis elegans Hypothetical
           protein C45G9.6a protein.
          Length = 542

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = -3

Query: 341 HQQCNHEQTCVSSHRHDVVCSKSGLLTSRDVHGC*SGLPVS*GSPACRY 195
           H+QC +   C+S  R    C+ +G    RD+  C + +  + GS  C Y
Sbjct: 417 HRQCLYHSDCISGQR----CTPTG----RDIATCETDISATIGSIQCFY 457


>U00047-13|AAY43978.1|  301|Caenorhabditis elegans Hypothetical
           protein ZK418.11 protein.
          Length = 301

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +1

Query: 346 PFSLSPGHCPQRC 384
           P S +PG CPQRC
Sbjct: 13  PKSCNPGECPQRC 25


>AL032650-2|CAA21705.1|  259|Caenorhabditis elegans Hypothetical
           protein W09C5.1 protein.
          Length = 259

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -3

Query: 131 RPYAFHRRYGACAHPPLQITSDIPLPGMKRSTS 33
           RP     +     HP LQ T  +P+ G+K++ S
Sbjct: 171 RPMGLRFKKAHVTHPELQTTFHLPIVGVKKNPS 203


>Z82052-5|CAB04828.1|  382|Caenorhabditis elegans Hypothetical
           protein T25E12.10 protein.
          Length = 382

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -2

Query: 417 TSPSVSPGISCAPLRTMTRAKTERLASTMQPRTD 316
           T+PS S  I CA   T+   K  +L S+ QPRT+
Sbjct: 113 TTPSTSKVI-CASGFTLVGTKCGKLVSSNQPRTE 145


>Z54216-9|CAN86906.1|  155|Caenorhabditis elegans Hypothetical
           protein T24H10.7d protein.
          Length = 155

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +2

Query: 56  ATGC-QKLFEVVDEHKLRIFYEKRMGAEVDADLL 154
           AT C QK  + + E + ++ +EK  G  +DA+LL
Sbjct: 94  ATKCRQKKMDRIKELEEQVLHEKHRGQRLDAELL 127


>Z54216-8|CAA90948.1|  101|Caenorhabditis elegans Hypothetical
           protein T24H10.7c protein.
          Length = 101

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +2

Query: 56  ATGC-QKLFEVVDEHKLRIFYEKRMGAEVDADLL 154
           AT C QK  + + E + ++ +EK  G  +DA+LL
Sbjct: 40  ATKCRQKKMDRIKELEEQVLHEKHRGQRLDAELL 73


>Z54216-7|CAI46586.1|  299|Caenorhabditis elegans Hypothetical
           protein T24H10.7b protein.
          Length = 299

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +2

Query: 56  ATGC-QKLFEVVDEHKLRIFYEKRMGAEVDADLL 154
           AT C QK  + + E + ++ +EK  G  +DA+LL
Sbjct: 238 ATKCRQKKMDRIKELEEQVLHEKHRGQRLDAELL 271


>Z54216-6|CAB76416.2|  319|Caenorhabditis elegans Hypothetical
           protein T24H10.7a protein.
          Length = 319

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +2

Query: 56  ATGC-QKLFEVVDEHKLRIFYEKRMGAEVDADLL 154
           AT C QK  + + E + ++ +EK  G  +DA+LL
Sbjct: 258 ATKCRQKKMDRIKELEEQVLHEKHRGQRLDAELL 291


>Z14092-9|CAA78474.1| 1429|Caenorhabditis elegans Hypothetical
           protein R107.8 protein.
          Length = 1429

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
 Frame = -3

Query: 332 CNHEQTCVSSHRHDVVCS-KSGLLTSRDVHGC*SGLPVS*GSPACRYRRQHG 180
           C ++ TC+ +  H  VC  K+G +  R    C    P+  G   C  R + G
Sbjct: 413 CENDGTCMHTSDHSPVCQCKNGFIGKR----CEKECPIGFGGVRCDLRLEIG 460


>M12069-1|AAA70191.1| 1429|Caenorhabditis elegans protein (
           C.elegans homeotic lin-12 protein gene, complete cds. ).
          Length = 1429

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
 Frame = -3

Query: 332 CNHEQTCVSSHRHDVVCS-KSGLLTSRDVHGC*SGLPVS*GSPACRYRRQHG 180
           C ++ TC+ +  H  VC  K+G +  R    C    P+  G   C  R + G
Sbjct: 413 CENDGTCMHTSDHSPVCQCKNGFIGKR----CEKECPIGFGGVRCDLRLEIG 460


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,649,036
Number of Sequences: 27780
Number of extensions: 195165
Number of successful extensions: 461
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 461
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 682028672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)