Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_D19
         (421 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g31700.1 68417.m04500 40S ribosomal protein S6 (RPS6A) riboso...   174   2e-44
At5g10360.1 68418.m01202 40S ribosomal protein S6 (RPS6B)             173   3e-44
At1g61690.1 68414.m06958 tetratricopeptide repeat (TPR)-containi...    29   1.7  
At4g24170.1 68417.m03468 kinesin motor family protein contains P...    28   3.0  
At1g21740.1 68414.m02721 expressed protein contains Pfam domains...    27   3.9  
At3g53720.1 68416.m05934 cation/hydrogen exchanger, putative (CH...    27   5.2  
At1g67280.1 68414.m07657 lactoylglutathione lyase, putative / gl...    27   5.2  
At5g07820.1 68418.m00896 expressed protein                             27   6.8  
At4g14160.3 68417.m02185 transport protein, putative similar to ...    27   6.8  
At4g14160.2 68417.m02186 transport protein, putative similar to ...    27   6.8  
At4g14160.1 68417.m02184 transport protein, putative similar to ...    27   6.8  

>At4g31700.1 68417.m04500 40S ribosomal protein S6 (RPS6A) ribosomal
           protein S6, Arabidopsis thaliana, PID:g2662469
          Length = 250

 Score =  174 bits (424), Expect = 2e-44
 Identities = 83/132 (62%), Positives = 100/132 (75%), Gaps = 2/132 (1%)
 Frame = +2

Query: 32  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 211
           MK NV+ P TGCQK  E+ D+ KLR FY+KR+  EV  D LG+E+KGYV ++ GG DKQG
Sbjct: 1   MKFNVANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIKGGCDKQG 60

Query: 212 FPMKQGVLTNSRVRLLMSKGHSCYR--PRRDGERKRKSVRGCIVDANLSVLALVIVRKGA 385
           FPMKQGVLT  RVRLL+ +G  C+R   RR GER+RKSVRGCIV  +LSVL LVIV+KG 
Sbjct: 61  FPMKQGVLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLNLVIVKKGE 120

Query: 386 QEIPGLTDGEVP 421
            ++PGLTD E P
Sbjct: 121 NDLPGLTDTEKP 132


>At5g10360.1 68418.m01202 40S ribosomal protein S6 (RPS6B)
          Length = 249

 Score =  173 bits (422), Expect = 3e-44
 Identities = 82/132 (62%), Positives = 100/132 (75%), Gaps = 2/132 (1%)
 Frame = +2

Query: 32  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 211
           MK NV+ P TGCQK  E+ D+ KLR F++KR+  EV  D LG+E+KGYV ++ GG DKQG
Sbjct: 1   MKFNVANPTTGCQKKLEIDDDQKLRAFFDKRLSQEVSGDALGEEFKGYVFKIMGGCDKQG 60

Query: 212 FPMKQGVLTNSRVRLLMSKGHSCYR--PRRDGERKRKSVRGCIVDANLSVLALVIVRKGA 385
           FPMKQGVLT  RVRLL+ +G  C+R   RR GER+RKSVRGCIV  +LSVL LVIV+KG 
Sbjct: 61  FPMKQGVLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLNLVIVKKGV 120

Query: 386 QEIPGLTDGEVP 421
            ++PGLTD E P
Sbjct: 121 SDLPGLTDTEKP 132


>At1g61690.1 68414.m06958 tetratricopeptide repeat (TPR)-containing
           protein contains Pfam profile PF00515: TPR Domain
          Length = 1155

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 21/94 (22%), Positives = 43/94 (45%)
 Frame = +2

Query: 71  KLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRV 250
           K  E    +++R+   +R  AE+  +LLG + K   LR  G  D+    + Q  +  +++
Sbjct: 595 KTAEAQGAYEVRVTKPRRTKAEIQRELLGLKRKALTLRRQGNVDEAEEVLNQTQILEAQI 654

Query: 251 RLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLS 352
            + +  G + Y    D ++ +K       D+ L+
Sbjct: 655 -MEIDSGKNLY---ADSDQPKKRSNDLATDSRLN 684


>At4g24170.1 68417.m03468 kinesin motor family protein contains Pfam
           domain, PF00225: Kinesin motor domain
          Length = 1004

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 19/56 (33%), Positives = 27/56 (48%)
 Frame = +2

Query: 146 DLLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKR 313
           DL G E     L  AG   K+G  + + +LT   V   +SKG + + P RD +  R
Sbjct: 231 DLAGSERASQTLS-AGSRLKEGCHINRSLLTLGTVIRKLSKGKNGHIPYRDSKLTR 285


>At1g21740.1 68414.m02721 expressed protein contains Pfam domains,
           PF04782: Protein of unknown function (DUF632) and
           PF04783: Protein of unknown function (DUF630)
          Length = 953

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +2

Query: 68  QKLF-EVVDEHKLRIFYEKRMGAEVDADLLGDE 163
           +KL+ EV DE KLR+ YE++       D LG E
Sbjct: 602 KKLYKEVKDEEKLRVVYEEKCRTLKKLDSLGAE 634


>At3g53720.1 68416.m05934 cation/hydrogen exchanger, putative
           (CHX20) monovalent cation:proton antiporter family 2
           (CPA2) member, PMID:11500563
          Length = 842

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 20/58 (34%), Positives = 26/58 (44%)
 Frame = -3

Query: 197 YRRQHGEHNLSIRRLEDLHQLQRPYAFHRRYGACAHPPLQITSDIPLPGMKRSTS*LR 24
           Y+   G H    R+L+DL   Q       R  AC H P  ++S I L    R+T  LR
Sbjct: 434 YKPARGTH----RKLKDLSASQDSTKEELRILACLHGPANVSSLISLVESIRTTKILR 487


>At1g67280.1 68414.m07657 lactoylglutathione lyase, putative /
           glyoxalase I, putative similar to putative
           lactoylglutathione lyase SP:Q39366, GI:2494843 from
           [Brassica oleracea]
          Length = 350

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 17/56 (30%), Positives = 25/56 (44%)
 Frame = +2

Query: 53  PATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQGFPM 220
           P   CQ +  V D  +   FYEK  G E+       E+K Y + + G   +  FP+
Sbjct: 216 PEPLCQVMLRVGDLDRAIKFYEKAFGMELLRTRDNPEYK-YTIAMMGYGPEDKFPV 270


>At5g07820.1 68418.m00896 expressed protein
          Length = 561

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -2

Query: 417 TSPSVSPGISCAPLRTMTRAKTERLASTMQPRTDL 313
           TSPSVSP +       +   K  R++    P+ DL
Sbjct: 163 TSPSVSPVVRTVKKTNLVVNKASRISQNKSPKEDL 197


>At4g14160.3 68417.m02185 transport protein, putative similar to
           Swiss-Prot:Q15436 protein transport protein Sec23A [Homo
           sapiens]
          Length = 620

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +1

Query: 355 LSPGHCPQRCTG 390
           + PGH PQRCTG
Sbjct: 264 VQPGHRPQRCTG 275


>At4g14160.2 68417.m02186 transport protein, putative similar to
           Swiss-Prot:Q15436 protein transport protein Sec23A [Homo
           sapiens]
          Length = 772

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +1

Query: 355 LSPGHCPQRCTG 390
           + PGH PQRCTG
Sbjct: 264 VQPGHRPQRCTG 275


>At4g14160.1 68417.m02184 transport protein, putative similar to
           Swiss-Prot:Q15436 protein transport protein Sec23A [Homo
           sapiens]
          Length = 621

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +1

Query: 355 LSPGHCPQRCTG 390
           + PGH PQRCTG
Sbjct: 264 VQPGHRPQRCTG 275


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,172,165
Number of Sequences: 28952
Number of extensions: 184131
Number of successful extensions: 420
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 418
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 645327280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)