Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_D18
         (286 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    25   2.8  
SPBC21C3.07c |||actin binding methyltransferase |Schizosaccharom...    25   2.8  
SPBC6B1.05c |||ubiquitin-like conjugating enzyme|Schizosaccharom...    24   3.7  
SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein Klp6|S...    24   3.7  
SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces pomb...    24   3.7  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    23   6.5  
SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces po...    23   6.5  
SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex ...    23   6.5  
SPCC1494.03 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    23   8.5  
SPAC144.15c |cog1||Golgi transport complex subunit Cog1 |Schizos...    23   8.5  

>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1471

 Score = 24.6 bits (51), Expect = 2.8
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -2

Query: 252 IMARWNDGSFAQRFKSLSLSKCAI 181
           I A W   S+ QR + LSL KCAI
Sbjct: 807 IQAHWR--SYIQRKRYLSLIKCAI 828


>SPBC21C3.07c |||actin binding methyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 281

 Score = 24.6 bits (51), Expect = 2.8
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
 Frame = +2

Query: 65  EMWPDKFQNKTNG--ITPRRWVLLCNPGLSDLICDKIGEDWIAHL 193
           E + D+F  K  G     RRW+    P L DL+ +  GE  I  +
Sbjct: 80  ERYWDQFYGKNEGKFFMNRRWIAQEFPELLDLLKEDAGEKSILEI 124


>SPBC6B1.05c |||ubiquitin-like conjugating
           enzyme|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 649

 Score = 24.2 bits (50), Expect = 3.7
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -2

Query: 210 KSLSLSKCAIQSSPILSQIR 151
           K LS ++  I S PILSQIR
Sbjct: 150 KDLSPAESLIPSGPILSQIR 169


>SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein
           Klp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 784

 Score = 24.2 bits (50), Expect = 3.7
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = -3

Query: 89  SGTYRATSRRNRGKRSLSG 33
           +G+ RA++ +NRGKR + G
Sbjct: 295 AGSERASATKNRGKRLVEG 313


>SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 775

 Score = 24.2 bits (50), Expect = 3.7
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 4  RGRRGHPLRHPESDRFPRFLR 66
          RG+R H L H E  +F R  R
Sbjct: 29 RGKRNHNLPHREKRKFARISR 49


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 23.4 bits (48), Expect = 6.5
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +2

Query: 164  KIGEDWIAHLDKLKDLKRWAKD 229
            K+GE    H DK  +LKRW  D
Sbjct: 1852 KLGEKSHLHYDK--ELKRWVND 1871


>SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 639

 Score = 23.4 bits (48), Expect = 6.5
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +2

Query: 2   HEGVAAIHSDILKATVF 52
           HEGV  IH DI  + +F
Sbjct: 408 HEGVNLIHRDIKPSNIF 424


>SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex
           subunit Apc3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 23.4 bits (48), Expect = 6.5
 Identities = 8/29 (27%), Positives = 14/29 (48%)
 Frame = -3

Query: 104 CRWFYSGTYRATSRRNRGKRSLSGCRSGW 18
           C + ++ T     R  +G  ++  CRS W
Sbjct: 67  CTYLFARTSLILGRYKQGISAVEACRSNW 95


>SPCC1494.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 492

 Score = 23.0 bits (47), Expect = 8.5
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +2

Query: 188 HLDKLKDLKRWAKDPSFQRAI 250
           H ++   LK W+K P F  A+
Sbjct: 362 HPERFYKLKDWSKSPDFNLAL 382


>SPAC144.15c |cog1||Golgi transport complex subunit Cog1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 701

 Score = 23.0 bits (47), Expect = 8.5
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +2

Query: 50  FRDFYEMWPDKFQN 91
           F++FYE+W    QN
Sbjct: 341 FKEFYELWNSILQN 354


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,131,229
Number of Sequences: 5004
Number of extensions: 19542
Number of successful extensions: 60
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 65671360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)