Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_D18
         (286 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54274| Best HMM Match : Response_reg (HMM E-Value=0.49)             30   0.34 
SB_39896| Best HMM Match : DUF1018 (HMM E-Value=1.7)                   30   0.34 
SB_1817| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   1.8  
SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.2  
SB_19054| Best HMM Match : Tropomyosin (HMM E-Value=0.16)              26   4.2  
SB_26007| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   7.4  
SB_10066| Best HMM Match : GPS (HMM E-Value=8.6e-07)                   25   7.4  
SB_42321| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   7.4  
SB_55186| Best HMM Match : TPR_2 (HMM E-Value=0.91)                    25   9.8  
SB_40572| Best HMM Match : Ank (HMM E-Value=0.0017)                    25   9.8  
SB_11331| Best HMM Match : UnbV_ASPIC (HMM E-Value=2.6)                25   9.8  

>SB_54274| Best HMM Match : Response_reg (HMM E-Value=0.49)
          Length = 310

 Score = 29.9 bits (64), Expect = 0.34
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 5   EGVAAIHSDILKATVFRDFYEMWP 76
           +GVAA+H+ +LK + F D    WP
Sbjct: 113 QGVAALHAKLLKGSAFIDRVRKWP 136


>SB_39896| Best HMM Match : DUF1018 (HMM E-Value=1.7)
          Length = 318

 Score = 29.9 bits (64), Expect = 0.34
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 5   EGVAAIHSDILKATVFRDFYEMWP 76
           +GVAA+H+ +LK + F D    WP
Sbjct: 113 QGVAALHAKLLKGSAFIDRVRKWP 136


>SB_1817| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1300

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 21/66 (31%), Positives = 34/66 (51%)
 Frame = -2

Query: 237 NDGSFAQRFKSLSLSKCAIQSSPILSQIRSERPGLQSKTQRRGVMPLVLFWNLSGHIS*K 58
           N  S A  ++S+   K A   SP+  ++  + P L+ K+ RRG  P  LF  +   +  K
Sbjct: 624 NSTSEAGTYESIEAIKPA---SPVYDRV--DHPRLERKSGRRGAHPSKLFSVVGPGLGGK 678

Query: 57  SRKTVA 40
           SR++ A
Sbjct: 679 SRESQA 684


>SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5659

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = -1

Query: 238  ERRILRPTFQVFKFVQVRDPVFAYL 164
            ++++ R + + F+FV V DP F Y+
Sbjct: 5520 DKQVQRFSLKAFQFVNVPDPTFVYI 5544


>SB_19054| Best HMM Match : Tropomyosin (HMM E-Value=0.16)
          Length = 375

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -1

Query: 133 AEQNPTAGSDAVGFILELIGPHLVEIAENGRFQDVG 26
           AEQ  T G   VG   +++G H   + E  + QDVG
Sbjct: 128 AEQKVTMGFQEVGKEFQVVGQHFQSVDE--KVQDVG 161


>SB_26007| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1145

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +2

Query: 20  IHSDILKATVFRDFYEMWP 76
           +HS+ILK TV RD +  WP
Sbjct: 917 LHSNILKPTVDRDIF-TWP 934


>SB_10066| Best HMM Match : GPS (HMM E-Value=8.6e-07)
          Length = 1146

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 57  ISTRCGPISSRIKPTASLPAVGFCSAIPVSPI 152
           ++T   P+S      A++P   FCS+ P  PI
Sbjct: 897 LTTGSTPVSGCDGTQATVPTSAFCSSSPCEPI 928


>SB_42321| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 648

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = +3

Query: 15  RPSTPTS*KRPFSAISTRCGPISSRIKPTASLPAVG 122
           RPSTPT+ KR   A +T+ G  + R     S  A G
Sbjct: 577 RPSTPTTTKRSSCATATQKGNSTGRENHRESYQANG 612


>SB_55186| Best HMM Match : TPR_2 (HMM E-Value=0.91)
          Length = 571

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = -2

Query: 210 KSLSLSKCAIQSSPILSQIRSE 145
           KS SLSK A  +SP L Q+ SE
Sbjct: 60  KSRSLSKMAANTSPSLPQLFSE 81


>SB_40572| Best HMM Match : Ank (HMM E-Value=0.0017)
          Length = 205

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = +2

Query: 5   EGVAAIHSDILKATVF--RDFYEMWPDKFQNKTNGITPR 115
           EG A +  D L  T+   + +Y+    + Q+ TNGI+PR
Sbjct: 26  EGTAELR-DALNLTLLYMQKYYKTLRSRSQSNTNGISPR 63


>SB_11331| Best HMM Match : UnbV_ASPIC (HMM E-Value=2.6)
          Length = 136

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -1

Query: 127 QNPTAGSDAVGFILELIG 74
           QNPT   DA+G ++E++G
Sbjct: 63  QNPTELLDAIGAVVEVVG 80


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,738,663
Number of Sequences: 59808
Number of extensions: 155099
Number of successful extensions: 453
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 453
length of database: 16,821,457
effective HSP length: 70
effective length of database: 12,634,897
effective search space used: 303237528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)