Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_D18
(286 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g29320.1 68416.m03682 glucan phosphorylase, putative similar ... 109 4e-25
At3g46970.1 68416.m05100 starch phosphorylase, putative similar ... 99 4e-22
At5g38460.1 68418.m04649 ALG6, ALG8 glycosyltransferase family p... 30 0.29
At3g60280.1 68416.m06738 uclacyanin 3 (UCC3) identical to uclacy... 28 0.87
At5g38390.1 68418.m04639 F-box family protein contains F-box dom... 27 1.5
At3g09710.1 68416.m01150 calmodulin-binding family protein low s... 27 1.5
At1g02080.1 68414.m00130 transcriptional regulator-related conta... 27 1.5
At4g04500.1 68417.m00653 protein kinase family protein contains ... 27 2.0
At3g19780.1 68416.m02504 expressed protein 26 3.5
At5g14080.1 68418.m01647 pentatricopeptide (PPR) repeat-containi... 26 4.6
At4g20110.1 68417.m02943 vacuolar sorting receptor, putative sim... 25 6.1
At3g06960.2 68416.m00827 expressed protein 25 6.1
At3g06960.1 68416.m00826 expressed protein 25 6.1
At2g02150.1 68415.m00151 pentatricopeptide (PPR) repeat-containi... 25 6.1
At1g48090.2 68414.m05363 C2 domain-containing protein contains P... 25 8.1
At1g48090.1 68414.m05362 C2 domain-containing protein contains P... 25 8.1
>At3g29320.1 68416.m03682 glucan phosphorylase, putative similar to
alpha-glucan phosphorylase, L isozyme 1 precursor
GB:P04045 from [Solanum tuberosum] (J. Biochem. 106 (4),
691-695 (1989))
Length = 962
Score = 109 bits (261), Expect = 4e-25
Identities = 46/91 (50%), Positives = 67/91 (73%), Gaps = 1/91 (1%)
Frame = +2
Query: 8 GVAAIHSDILKATVFRDFYEMWPDKFQNKTNGITPRRWVLLCNPGLSDLICDKIG-EDWI 184
GVA IHS+I+K VF DF ++WP+KFQNKTNG+TPRRW+ CNP LSD+I + IG EDW+
Sbjct: 577 GVAEIHSEIVKQDVFNDFVQLWPEKFQNKTNGVTPRRWIRFCNPYLSDIITNWIGTEDWV 636
Query: 185 AHLDKLKDLKRWAKDPSFQRAIMKVKQENEL 277
+ +K+ +L+++A + Q K++N+L
Sbjct: 637 LNTEKVAELRKFADNEDLQSEWRAAKKKNKL 667
>At3g46970.1 68416.m05100 starch phosphorylase, putative similar to
alpha-glucan phosphorylase, H isozyme SP:P32811 from
[Solanum tuberosum]
Length = 841
Score = 99.1 bits (236), Expect = 4e-22
Identities = 47/94 (50%), Positives = 61/94 (64%), Gaps = 1/94 (1%)
Frame = +2
Query: 8 GVAAIHSDILKATVFRDFYEMWPDKFQNKTNGITPRRWVLLCNPGLSDLICDKIGED-WI 184
GVA +HSDILKA +F D+ +WP+KFQNKTNGITPRRW+ C+P LSD+I + D WI
Sbjct: 457 GVAQLHSDILKAELFADYVSIWPNKFQNKTNGITPRRWLRFCSPELSDIITKWLKTDKWI 516
Query: 185 AHLDKLKDLKRWAKDPSFQRAIMKVKQENELTLA 286
LD L L+++A + Q K N+ LA
Sbjct: 517 TDLDLLTGLRQFADNEELQSEWASAKTANKKRLA 550
>At5g38460.1 68418.m04649 ALG6, ALG8 glycosyltransferase family
protein similar to SP|Q9Y672 Dolichyl pyrophosphate
Man9GlcNAc2 alpha-1,3-glucosyltransferase (EC 2.4.1.-)
(Dolichyl-P-Glc:Man9GlcNAc2-PP-dolichyl
glucosyltransferase) {Homo sapiens}; contains Pfam
profile PF03155: ALG6, ALG8 glycosyltransferase family
Length = 533
Score = 29.9 bits (64), Expect = 0.29
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = -2
Query: 279 VSSFSCFTFIMARWNDGSFAQRFKSLSLSKCAIQSSPILSQ 157
V++F C T I+ +W + Q KS+SL+ + S P + Q
Sbjct: 311 VANFWCTTSILIKWKNLFTTQSLKSISLAATILASLPSMVQ 351
Score = 25.0 bits (52), Expect = 8.1
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = -2
Query: 225 FAQRFKSLSLSKCAIQSSPILSQIR 151
FA F S L KC + SPILS I+
Sbjct: 245 FAPAFFSHLLGKCLRRKSPILSVIK 269
>At3g60280.1 68416.m06738 uclacyanin 3 (UCC3) identical to
uclacyanin 3 GI:3395770 from [Arabidopsis thaliana];
contains Pfam profile PF02298: Plastocyanin-like domain;
identical to cDNA uclacyanin 3 (UCC3)GI:3395769
Length = 222
Score = 28.3 bits (60), Expect = 0.87
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = +3
Query: 3 TRASRPSTPTS*KRPFSAISTRCGPISSRIKPTASLP 113
T +S PSTP++ P S ST P S P+ SLP
Sbjct: 127 TPSSPPSTPSTPSSPPSTPSTPSSPPSPPSPPSPSLP 163
>At5g38390.1 68418.m04639 F-box family protein contains F-box domain
Pfam:PF00646
Length = 456
Score = 27.5 bits (58), Expect = 1.5
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2
Query: 8 GVAAIHSDILKATVFRDFYEMWPDKFQNK 94
GV+ ++ I +VF D Y ++P F+NK
Sbjct: 97 GVSELNLSIFVDSVFEDDYNLFPKVFENK 125
>At3g09710.1 68416.m01150 calmodulin-binding family protein low
similarity to SF16 protein [Helianthus annuus]
GI:560150; contains Pfam profile PF00612: IQ
calmodulin-binding motif
Length = 454
Score = 27.5 bits (58), Expect = 1.5
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = -2
Query: 234 DGSFAQRFKSLSLSKCAIQSSPILSQIRSERPGLQSKTQRR 112
+GS QR +++L KC S + SQIRS R + + Q R
Sbjct: 141 EGSVVQRQAAITL-KCMQTLSRVQSQIRSRRIRMSEENQAR 180
>At1g02080.1 68414.m00130 transcriptional regulator-related contains
Pfam PF04054: CCR4-Not complex component, Not1; contains
TIGRFAM TIGR01612: reticulocyte binding protein; similar
to General negative regulator of transcription subunit 1
(SP:P25655) {Saccharomyces cerevisiae}; Location of ESTs
gb|T44328 and gb|AA395265
Length = 2378
Score = 27.5 bits (58), Expect = 1.5
Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +2
Query: 56 DFYEMWPDKFQNKTNGITPRRWVLLCN-PGLSDLICDKIGEDWIAHLDKLKDLKRWAKDP 232
D+ E P FQN+ + + + W +C PG ++ C + ++ HL + LK
Sbjct: 1841 DYVESDPAGFQNRVSTLF-KNWYQICELPGANETACSQ----YVLHLHQTGLLKGDDTTE 1895
Query: 233 SFQRAIMKV 259
SF R ++++
Sbjct: 1896 SFFRILLEL 1904
>At4g04500.1 68417.m00653 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain
Length = 646
Score = 27.1 bits (57), Expect = 2.0
Identities = 14/57 (24%), Positives = 25/57 (43%)
Frame = -2
Query: 255 FIMARWNDGSFAQRFKSLSLSKCAIQSSPILSQIRSERPGLQSKTQRRGVMPLVLFW 85
F+ RW +G FA+ L+ I + ++ I +Q +R + +LFW
Sbjct: 563 FVWKRWIEGRFAEIIDPLAAPSNNISINEVMKLIHIGLLCVQEDISKRPSINSILFW 619
>At3g19780.1 68416.m02504 expressed protein
Length = 1014
Score = 26.2 bits (55), Expect = 3.5
Identities = 9/30 (30%), Positives = 17/30 (56%)
Frame = +2
Query: 182 IAHLDKLKDLKRWAKDPSFQRAIMKVKQEN 271
+A KL D+K+W D ++ + + QE+
Sbjct: 363 VAAQHKLSDIKKWENDIMYENPVSQTDQES 392
>At5g14080.1 68418.m01647 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 634
Score = 25.8 bits (54), Expect = 4.6
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = -2
Query: 228 SFAQRFKSLSLSKCAIQSSPILSQIRSERPGLQSKTQRRGVMPLVL 91
S+ FKSLSLS+ + Q++S + L S R + LVL
Sbjct: 84 SYHSIFKSLSLSRQFSAMDALFKQVKSNKILLDSSVYRSLIDTLVL 129
>At4g20110.1 68417.m02943 vacuolar sorting receptor, putative
similar to BP-80 vacuolar sorting receptor [Pisum
sativum] GI:1737222; identical to vacuolar sorting
receptor-like protein (GI:2827665) [Arabidopsis
thaliana]
Length = 625
Score = 25.4 bits (53), Expect = 6.1
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -1
Query: 172 AYLVAD*IGETGIAEQNPTAGSDAVGFILELIGPHLV 62
A LVAD + E + +P DA GFI +L P ++
Sbjct: 117 AVLVADNVDEPLLTMDSPEESKDADGFIEKLTIPSVL 153
>At3g06960.2 68416.m00827 expressed protein
Length = 341
Score = 25.4 bits (53), Expect = 6.1
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +3
Query: 51 SAISTRCGPISSRIKPTASLPAVGFCSAIPVSP 149
S +++R I +K SL A+GFCS +SP
Sbjct: 124 STVASRLNTIGKHLKDK-SLYALGFCSEFLLSP 155
>At3g06960.1 68416.m00826 expressed protein
Length = 479
Score = 25.4 bits (53), Expect = 6.1
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +3
Query: 51 SAISTRCGPISSRIKPTASLPAVGFCSAIPVSP 149
S +++R I +K SL A+GFCS +SP
Sbjct: 124 STVASRLNTIGKHLKDK-SLYALGFCSEFLLSP 155
>At2g02150.1 68415.m00151 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 1141
Score = 25.4 bits (53), Expect = 6.1
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -1
Query: 79 IGPHLVEIAENGRFQDVGVDGRDA 8
I H++E+ E+ R DV GRD+
Sbjct: 824 ISQHVIEVCESKRDHDVDSGGRDS 847
>At1g48090.2 68414.m05363 C2 domain-containing protein contains Pfam
profile: PF00168 C2 domain
Length = 3427
Score = 25.0 bits (52), Expect = 8.1
Identities = 9/37 (24%), Positives = 18/37 (48%)
Frame = +2
Query: 71 WPDKFQNKTNGITPRRWVLLCNPGLSDLICDKIGEDW 181
+P + + + + ITP W+ + G+ + KI W
Sbjct: 272 FPWEIEKQWDNITPEEWIEMFEDGIKEQTEHKIKSKW 308
>At1g48090.1 68414.m05362 C2 domain-containing protein contains Pfam
profile: PF00168 C2 domain
Length = 4144
Score = 25.0 bits (52), Expect = 8.1
Identities = 9/37 (24%), Positives = 18/37 (48%)
Frame = +2
Query: 71 WPDKFQNKTNGITPRRWVLLCNPGLSDLICDKIGEDW 181
+P + + + + ITP W+ + G+ + KI W
Sbjct: 272 FPWEIEKQWDNITPEEWIEMFEDGIKEQTEHKIKSKW 308
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,189,873
Number of Sequences: 28952
Number of extensions: 110215
Number of successful extensions: 336
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 327
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 336
length of database: 12,070,560
effective HSP length: 69
effective length of database: 10,072,872
effective search space used: 251821800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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