Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_D17
(344 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C... 118 3e-28
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit... 62 2e-11
SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ... 60 1e-10
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 57 9e-10
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni... 53 1e-08
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ... 52 2e-08
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 45 3e-06
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C... 41 5e-05
SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit Ssr2|Schizosa... 29 0.15
SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60... 29 0.27
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc... 26 1.9
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 25 3.3
SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol pyrop... 25 4.4
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ... 24 7.6
SPBC11G11.05 |rpa34||DNA-directed RNA polymerase I complex subun... 24 7.6
>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
Cct6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 118 bits (284), Expect = 3e-28
Identities = 60/99 (60%), Positives = 70/99 (70%)
Frame = +2
Query: 47 ISLLNPKAELARASQALAVNISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVL 226
+SLLNPKAE + +QAL VNISAA G+QDV+K+NLGP GT KMLV GAG IK+TKDG VL
Sbjct: 2 LSLLNPKAESIQRAQALQVNISAAIGLQDVLKSNLGPTGTTKMLVDGAGAIKLTKDGKVL 61
Query: 227 LHEMQIQHPTASLIARXXXXXXXXXXXXXXXXVLLIGEL 343
L EMQIQ+PTAS IA+ LL+GEL
Sbjct: 62 LTEMQIQNPTASCIAKAATAQDDATGDGTTSVCLLVGEL 100
>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
Cct3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 62.5 bits (145), Expect = 2e-11
Identities = 28/99 (28%), Positives = 49/99 (49%)
Frame = +2
Query: 47 ISLLNPKAELARASQALAVNISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVL 226
+ ++N +A NI AAK + DV++T LGP+ +KML+ G + +T DG+ +
Sbjct: 5 VFVMNTNGNRQVGHKAQMSNIQAAKAVADVIRTCLGPRAMLKMLLDPVGSVLLTNDGHAI 64
Query: 227 LHEMQIQHPTASLIARXXXXXXXXXXXXXXXXVLLIGEL 343
L E+++ HP A + ++L GE+
Sbjct: 65 LREIEVAHPAAKSMIELARTQDEEVGDGTTSVIILAGEI 103
>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
Cct4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 527
Score = 59.7 bits (138), Expect = 1e-10
Identities = 25/80 (31%), Positives = 42/80 (52%)
Frame = +2
Query: 104 NISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVLLHEMQIQHPTASLIARXXX 283
NI AA+ + D ++T+LGPKG KM+ +G G++ +T DG +L + + HP A ++
Sbjct: 24 NIMAARSVADAIRTSLGPKGMDKMIQTGKGEVILTNDGATILKHLSVLHPAAKMLVDLSA 83
Query: 284 XXXXXXXXXXXXXVLLIGEL 343
V+L G +
Sbjct: 84 AQDVEAGDGTTSVVILAGSM 103
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 56.8 bits (131), Expect = 9e-10
Identities = 26/84 (30%), Positives = 47/84 (55%)
Frame = +2
Query: 92 ALAVNISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVLLHEMQIQHPTASLIA 271
A+ +I A K + ++++T+LGP+G K+L+S G+I +T DG +L +M+++H A L+
Sbjct: 35 AVKSHILATKTVANIVRTSLGPRGLDKILISPDGEITVTNDGATILDQMEVEHQIAKLLV 94
Query: 272 RXXXXXXXXXXXXXXXXVLLIGEL 343
+ V+L G L
Sbjct: 95 QLSKSQDDEIGDGTTGVVVLAGAL 118
>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
Cct1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 53.2 bits (122), Expect = 1e-08
Identities = 24/80 (30%), Positives = 39/80 (48%)
Frame = +2
Query: 104 NISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVLLHEMQIQHPTASLIARXXX 283
N+ A I +V+K++LGP G KMLV GD+ +T DG +L + ++HP ++
Sbjct: 26 NVLATTAIANVVKSSLGPVGLDKMLVDDIGDVTVTNDGATILSLLDVEHPAGKVLVELAQ 85
Query: 284 XXXXXXXXXXXXXVLLIGEL 343
V++ EL
Sbjct: 86 QQDKEVGDGTTSVVIIAAEL 105
>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
Cct7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 558
Score = 52.4 bits (120), Expect = 2e-08
Identities = 25/83 (30%), Positives = 39/83 (46%)
Frame = +2
Query: 95 LAVNISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVLLHEMQIQHPTASLIAR 274
L NI+A +QD ++T LGP G K++V G++ I+ DG ++ + I HP A +
Sbjct: 26 LLSNINACVAVQDTIRTTLGPLGADKLMVDDRGEVVISNDGATIMKLLDIVHPAAKTLVD 85
Query: 275 XXXXXXXXXXXXXXXXVLLIGEL 343
V+ GEL
Sbjct: 86 IARAQDAEVGDGTTSVVVFAGEL 108
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 45.2 bits (102), Expect = 3e-06
Identities = 21/84 (25%), Positives = 40/84 (47%)
Frame = +2
Query: 92 ALAVNISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVLLHEMQIQHPTASLIA 271
A+ N +A + + ++ +T+LGP G K++V+ +T D ++ E+++ HP A L+
Sbjct: 27 AVIRNCNAIRELSEITRTSLGPNGKNKIVVNHLQQTFLTNDAATIIRELEVIHPAAKLVV 86
Query: 272 RXXXXXXXXXXXXXXXXVLLIGEL 343
V+ GEL
Sbjct: 87 DATQQQENELGDAANFVVVFTGEL 110
>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
Cct2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 41.1 bits (92), Expect = 5e-05
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Frame = +2
Query: 53 LLNPKAELARASQALAVNISAAKGIQDVMKTNLGPKGTMKMLVSGA-GDIKITKDGNVLL 229
+ N R A + A + D++K+ LGPKG K+L S + GDI +T DG +L
Sbjct: 8 IFNESGIQERGENARLSSFVGAIAVGDLVKSTLGPKGMDKILQSNSSGDIVVTNDGATIL 67
Query: 230 HEMQIQHPTASLI 268
+ + + A ++
Sbjct: 68 KSIALDNAAAKVL 80
>SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit
Ssr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 503
Score = 29.5 bits (63), Expect = 0.15
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = +1
Query: 217 QRTSP*DADSTSDCFS--NRACFDCTR*CYRRWYH 315
++TSP + D SD ++ CF C C + WYH
Sbjct: 172 EQTSPKEEDEKSDKVPRVDKVCFTCGVNCSQTWYH 206
>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
Length = 582
Score = 28.7 bits (61), Expect = 0.27
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +2
Query: 137 MKTNLGPKGTMKMLVSGAGDIKITKDGNVLLHEMQIQHPTASLIAR 274
+ LGPKG ++ G KITKDG + + ++ +L AR
Sbjct: 58 VSVTLGPKGRNVLIDQPFGSPKITKDGVTVARSVSLKDKFENLGAR 103
>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 791
Score = 25.8 bits (54), Expect = 1.9
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +2
Query: 32 LEMAAISLLNPKAELARASQALAVNISAAKGIQDVMKTNLGPKGT 166
LE A ISL+ ++ + +N S+ + D+ TN+ PK T
Sbjct: 148 LEDAVISLVEADSQESDTESLPEINDSSDVSLSDLPSTNVTPKKT 192
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 25.0 bits (52), Expect = 3.3
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -1
Query: 338 HQ*ATQLKWYHRL*HHLVQSKHARL 264
H ATQ+KW ++ H++ S H RL
Sbjct: 366 HNGATQVKWNYKN-PHILASSHGRL 389
>SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol
pyrophosphate phosphatase fusion 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 24.6 bits (51), Expect = 4.4
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = -1
Query: 314 WYHRL*HHLVQSKHARLEKQSD 249
W+ + +H+VQ+++ R EKQ D
Sbjct: 163 WHSWIQNHVVQAQYYRTEKQYD 184
>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1364
Score = 23.8 bits (49), Expect = 7.6
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +2
Query: 47 ISLLNPKAELARASQALAVNISAAKGIQDVMKTNL 151
+S+ NP L A +AL V+ + + + D +TN+
Sbjct: 220 LSIQNPTKALPEAEKALDVHDATREQVNDREETNM 254
>SPBC11G11.05 |rpa34||DNA-directed RNA polymerase I complex subunit
Rpa34 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 251
Score = 23.8 bits (49), Expect = 7.6
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = -1
Query: 287 VQSKHARLEKQSDVESASHGE 225
++ +H+ E + VES +HGE
Sbjct: 22 IEDQHSSKEPEQSVESNNHGE 42
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,301,583
Number of Sequences: 5004
Number of extensions: 22214
Number of successful extensions: 58
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 102111100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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