Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_D17
(344 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0337 - 2658647-2658722,2658797-2658915,2658995-2659102,265... 123 3e-29
06_03_0353 + 19810945-19810975,19811308-19811369,19811741-198118... 66 9e-12
02_02_0253 - 8325437-8325628,8325705-8325779,8325933-8326037,832... 66 9e-12
02_02_0739 - 13560241-13560622,13561192-13561239,13563727-13564949 60 6e-10
06_03_0477 - 21250811-21250981,21251261-21251374,21251447-212516... 58 2e-09
03_06_0362 + 33379489-33379624,33380161-33380423,33380524-333806... 51 3e-07
06_03_1193 - 28298656-28298754,28299303-28299377,28299456-282995... 47 3e-06
10_08_0620 - 19321612-19323237 46 1e-05
04_04_0729 + 27612106-27612195,27612284-27612370,27612469-276125... 38 0.003
02_01_0024 + 159595-159801,159892-160017,160201-160338,160431-16... 34 0.026
06_01_0097 - 810283-810296,810398-810521,810974-811066,811144-81... 33 0.045
03_01_0305 - 2383187-2383298,2383606-2383684,2383762-2383867,238... 33 0.060
05_06_0240 - 26629218-26629323,26629412-26629490,26629656-266297... 29 0.74
05_01_0123 - 846081-846167,846264-846404,846749-846866,847382-84... 29 0.98
02_02_0208 + 7856215-7856622 27 3.9
11_06_0763 - 27101764-27104017,27104523-27105055,27106403-27106993 26 6.9
03_05_0916 - 28762214-28762414,28763144-28763242,28763573-287639... 26 6.9
>05_01_0337 -
2658647-2658722,2658797-2658915,2658995-2659102,
2659187-2659255,2659561-2659655,2659740-2659944,
2660125-2660211,2660291-2660405,2660696-2660802,
2661054-2661146,2661243-2661290,2661345-2661544,
2661993-2662128,2662228-2662291,2662779-2662912
Length = 551
Score = 123 bits (297), Expect = 3e-29
Identities = 60/100 (60%), Positives = 72/100 (72%)
Frame = +2
Query: 44 AISLLNPKAELARASQALAVNISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNV 223
++ +LNP AE+ S AL +NI+AAKG+QDV+KTNLGPKGT+KMLV GAGDIK+TKDGN
Sbjct: 2 SLRVLNPNAEVLNKSAALHMNINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNT 61
Query: 224 LLHEMQIQHPTASLIARXXXXXXXXXXXXXXXXVLLIGEL 343
LL EMQIQ+PTA +IAR VL IGEL
Sbjct: 62 LLKEMQIQNPTAIMIARTAVAQDDTSGDGTTSTVLFIGEL 101
>06_03_0353 +
19810945-19810975,19811308-19811369,19811741-19811813,
19813292-19813359,19813496-19813565,19813908-19813976,
19814065-19814136,19814247-19814320,19814420-19814697,
19814804-19815188,19815268-19815393,19815583-19815687,
19815986-19815994,19817040-19817114,19817202-19817390
Length = 561
Score = 65.7 bits (153), Expect = 9e-12
Identities = 30/101 (29%), Positives = 50/101 (49%)
Frame = +2
Query: 41 AAISLLNPKAELARASQALAVNISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGN 220
A + +L + ++ NI AAK + D+++T LGP+ +KML+ +G I +T DGN
Sbjct: 5 APVLVLKDSLKRESGTKVHHANIQAAKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGN 64
Query: 221 VLLHEMQIQHPTASLIARXXXXXXXXXXXXXXXXVLLIGEL 343
+L E+ I HP A + ++L GE+
Sbjct: 65 AILREIDIAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEM 105
>02_02_0253 -
8325437-8325628,8325705-8325779,8325933-8326037,
8326249-8326374,8326451-8326835,8326931-8327208,
8327294-8327367,8327476-8327547,8327637-8327705,
8340132-8340201,8340806-8340873,8341571-8341643,
8341807-8341868,8342168-8342198
Length = 559
Score = 65.7 bits (153), Expect = 9e-12
Identities = 30/101 (29%), Positives = 50/101 (49%)
Frame = +2
Query: 41 AAISLLNPKAELARASQALAVNISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGN 220
A + +L + ++ NI AAK + D+++T LGP+ +KML+ AG I +T DGN
Sbjct: 5 APVLVLKDSLKRESGTKVHHANIQAAKAVADIIRTTLGPQSMLKMLLDAAGGIVVTNDGN 64
Query: 221 VLLHEMQIQHPTASLIARXXXXXXXXXXXXXXXXVLLIGEL 343
+L E+ + HP A + ++L GE+
Sbjct: 65 CILRELDLAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEM 105
>02_02_0739 - 13560241-13560622,13561192-13561239,13563727-13564949
Length = 550
Score = 59.7 bits (138), Expect = 6e-10
Identities = 28/88 (31%), Positives = 44/88 (50%)
Frame = +2
Query: 80 RASQALAVNISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVLLHEMQIQHPTA 259
R +NI+AA+ + D ++T+LGP+G KM+ SG ++ IT DG +L M + P A
Sbjct: 23 RRDDVRGLNIAAARAVADAVRTSLGPRGMDKMISSGEQEVIITNDGATILSRMSLLQPAA 82
Query: 260 SLIARXXXXXXXXXXXXXXXXVLLIGEL 343
++A V+L G L
Sbjct: 83 RMLAELSRSQDAAAGDGTTTVVVLAGSL 110
>06_03_0477 -
21250811-21250981,21251261-21251374,21251447-21251613,
21252051-21252153,21252315-21252367,21252438-21252570,
21252835-21253183,21253685-21254003,21254519-21254717
Length = 535
Score = 58.0 bits (134), Expect = 2e-09
Identities = 30/93 (32%), Positives = 44/93 (47%)
Frame = +2
Query: 65 KAELARASQALAVNISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVLLHEMQI 244
K R A NI+A K + +++T+LGPKG KML S GD+ IT DG +L +M +
Sbjct: 20 KKSRLRGLDAQKANIAAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDV 79
Query: 245 QHPTASLIARXXXXXXXXXXXXXXXXVLLIGEL 343
+ A L+ V++ G L
Sbjct: 80 DNQIAKLMVELSCSQDYEIGDGTTGVVVMAGSL 112
>03_06_0362 +
33379489-33379624,33380161-33380423,33380524-33380670,
33380753-33380914,33381681-33381758,33382329-33382462,
33382702-33382774,33382852-33382929,33383002-33383124,
33383223-33383317,33383723-33383932,33384115-33384172,
33384268-33384333
Length = 540
Score = 50.8 bits (116), Expect = 3e-07
Identities = 22/90 (24%), Positives = 44/90 (48%)
Frame = +2
Query: 74 LARASQALAVNISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVLLHEMQIQHP 253
L+ +A+ NI A + + + +T+LGP G KM+++ + +T D +++E+++QHP
Sbjct: 17 LSGLDEAVLKNIDACRELSAITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHP 76
Query: 254 TASLIARXXXXXXXXXXXXXXXXVLLIGEL 343
A ++ + GEL
Sbjct: 77 AAKILVLAGRAQQEEIGDGANLTISFAGEL 106
>06_03_1193 -
28298656-28298754,28299303-28299377,28299456-28299544,
28299679-28299760,28300385-28300474,28300557-28300655,
28300733-28300852,28300968-28301084,28301174-28301309,
28301415-28301584,28301744-28301947,28302032-28302157,
28302841-28303101,28303215-28303229
Length = 560
Score = 47.2 bits (107), Expect = 3e-06
Identities = 25/98 (25%), Positives = 42/98 (42%)
Frame = +2
Query: 47 ISLLNPKAELARASQALAVNISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVL 226
I LL + ++ + NI+A + D ++T LGP+G K++ G I+ DG +
Sbjct: 9 IILLKEGTDTSQGRAQVVSNINACTVVADTVRTTLGPRGMDKLIHDDKGGTTISNDGATI 68
Query: 227 LHEMQIQHPTASLIARXXXXXXXXXXXXXXXXVLLIGE 340
+ + I HP A ++ VLL E
Sbjct: 69 MRLLDIIHPAAKILVDIAKSQDSEVGDGTTTVVLLAAE 106
>10_08_0620 - 19321612-19323237
Length = 541
Score = 45.6 bits (103), Expect = 1e-05
Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 4/92 (4%)
Frame = +2
Query: 80 RASQALAVNISAAKGIQDVMKTNLGPKGTMKMLVSGA--GD--IKITKDGNVLLHEMQIQ 247
R +NI+A + + +T+LGP+G KM+ S + GD + IT DG +L M +
Sbjct: 23 RRDDVRGLNIAAGRAVAAAARTSLGPRGMDKMISSSSSGGDQAVIITNDGATILSRMPLL 82
Query: 248 HPTASLIARXXXXXXXXXXXXXXXXVLLIGEL 343
P A ++A V+L G L
Sbjct: 83 QPAARMLADLSRSQDAAAGDGTTTVVVLAGSL 114
>04_04_0729 +
27612106-27612195,27612284-27612370,27612469-27612528,
27612554-27612688,27612769-27612864,27613149-27613214,
27613647-27613864,27614093-27614189,27614605-27614691,
27614892-27615026,27615121-27615225,27615717-27615845,
27615925-27616028,27616598-27616688,27616774-27616857
Length = 527
Score = 37.5 bits (83), Expect = 0.003
Identities = 16/57 (28%), Positives = 26/57 (45%)
Frame = +2
Query: 173 MLVSGAGDIKITKDGNVLLHEMQIQHPTASLIARXXXXXXXXXXXXXXXXVLLIGEL 343
MLV GD+ IT DG +L ++++HP A ++ V++ EL
Sbjct: 1 MLVDDIGDVTITNDGATILRMLEVEHPAAKVLVELAELQDREVGDGTTSVVIIAAEL 57
>02_01_0024 +
159595-159801,159892-160017,160201-160338,160431-160526,
160958-161200,161249-161537,161612-161781,161975-162052,
162156-162227,162345-162449,162555-162647,162737-162829,
163109-163235,163317-163330
Length = 616
Score = 34.3 bits (75), Expect = 0.026
Identities = 16/50 (32%), Positives = 28/50 (56%)
Frame = +2
Query: 125 IQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVLLHEMQIQHPTASLIAR 274
+ D++ LGPKG +L S G KI DG + E++++ P ++ A+
Sbjct: 75 LADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTVAKEVELEDPVENIGAK 124
>06_01_0097 -
810283-810296,810398-810521,810974-811066,811144-811236,
811410-811514,811661-811732,811857-811934,812210-812379,
812507-812741,812832-813074,813243-813338,813445-813582,
814014-814139,814235-814453
Length = 601
Score = 33.5 bits (73), Expect = 0.045
Identities = 15/50 (30%), Positives = 28/50 (56%)
Frame = +2
Query: 125 IQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVLLHEMQIQHPTASLIAR 274
+ D++ LGPKG +L S G +I DG + E++++ P ++ A+
Sbjct: 79 LADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAREVELEDPVENIGAK 128
>03_01_0305 -
2383187-2383298,2383606-2383684,2383762-2383867,
2383941-2384044,2384141-2384240,2384533-2384628,
2384724-2384801,2385355-2385423,2385511-2385591,
2385670-2385759,2385859-2385945,2386022-2386126,
2386591-2386686,2386796-2386971,2387225-2387384,
2387898-2388029,2388236-2388260,2389023-2389174
Length = 615
Score = 33.1 bits (72), Expect = 0.060
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +2
Query: 89 QALAVNISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDG 217
+A A+ + + + D +K +GPKG ++ G K+TKDG
Sbjct: 80 EARALMLRGVEELADAVKVTMGPKGRTVVIEQSFGAPKVTKDG 122
>05_06_0240 -
26629218-26629323,26629412-26629490,26629656-26629761,
26629844-26629947,26630069-26630168,26630256-26630351,
26630464-26630541,26630603-26630671,26630766-26630846,
26630879-26630935,26631016-26631105,26631192-26631278,
26631690-26631794,26631899-26631994,26632222-26632397,
26632847-26633006,26633151-26633600
Length = 679
Score = 29.5 bits (63), Expect = 0.74
Identities = 15/59 (25%), Positives = 27/59 (45%)
Frame = +2
Query: 71 ELARASQALAVNISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVLLHEMQIQ 247
E+A A A + + D +K +GPKG ++ K+TKDG + ++ +
Sbjct: 121 EVAFGVGARAALLQGVNDLADAVKVTMGPKGRNVIIERSHRAPKVTKDGVTVAKSIEFE 179
>05_01_0123 -
846081-846167,846264-846404,846749-846866,847382-847528,
848439-848441,848590-848627,848808-848851,848959-849016
Length = 211
Score = 29.1 bits (62), Expect = 0.98
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = +2
Query: 110 SAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVLLHEMQIQHPTASLI 268
SAA G++ V + L K+ V GD K D +V+ ++ ++PT SL+
Sbjct: 37 SAASGVETVPQLFLKISPEGKVPVFNGGDGKWIPDSDVITQVIEEKYPTPSLV 89
>02_02_0208 + 7856215-7856622
Length = 135
Score = 27.1 bits (57), Expect = 3.9
Identities = 17/46 (36%), Positives = 22/46 (47%)
Frame = -3
Query: 168 IVPFGPRLVFITS*IPLAAEIFTAKACEALASSALGFNKLIAAISS 31
+ P P T IPL FTA A +AL + +G + L A SS
Sbjct: 74 LAPGEPAPPTTTPTIPLGINNFTASAAQALQAGRIGTSVLANASSS 119
>11_06_0763 - 27101764-27104017,27104523-27105055,27106403-27106993
Length = 1125
Score = 26.2 bits (55), Expect = 6.9
Identities = 10/16 (62%), Positives = 14/16 (87%)
Frame = +2
Query: 62 PKAELARASQALAVNI 109
PKAELA+ S+ L++NI
Sbjct: 869 PKAELAKCSEVLSINI 884
>03_05_0916 -
28762214-28762414,28763144-28763242,28763573-28763998,
28764259-28764501,28764706-28764927,28765392-28765721,
28767380-28767800,28768292-28768404,28769224-28769367,
28769439-28769570,28769802-28770013,28770983-28771505
Length = 1021
Score = 26.2 bits (55), Expect = 6.9
Identities = 15/54 (27%), Positives = 22/54 (40%)
Frame = +2
Query: 56 LNPKAELARASQALAVNISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDG 217
LNP+ Q + S GIQ V K G + + GA D++ + G
Sbjct: 816 LNPRKAEKEFEQKIVPVASQYPGIQKVTKVRGARMGKKVVEIEGADDVRFSPSG 869
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,499,636
Number of Sequences: 37544
Number of extensions: 148069
Number of successful extensions: 303
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 303
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 494158076
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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