Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_D17
         (344 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)               76   9e-15
SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)                  57   4e-09
SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)                   52   1e-07
SB_22388| Best HMM Match : Extensin_2 (HMM E-Value=0.086)              52   1e-07
SB_4934| Best HMM Match : NAD_binding_2 (HMM E-Value=4.8)              50   5e-07
SB_56262| Best HMM Match : Cpn60_TCP1 (HMM E-Value=6.6e-15)            43   8e-05
SB_49248| Best HMM Match : Cpn60_TCP1 (HMM E-Value=1.6)                36   0.007
SB_25097| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.11 
SB_38305| Best HMM Match : CW_binding_1 (HMM E-Value=0.4)              30   0.58 
SB_47328| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.1  
SB_23967| Best HMM Match : SRCR (HMM E-Value=5.4e-11)                  27   4.1  
SB_56964| Best HMM Match : Zona_pellucida (HMM E-Value=0)              27   5.4  
SB_43497| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.4  
SB_14318| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.4  
SB_18401| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.4  

>SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 762

 Score = 75.8 bits (178), Expect = 9e-15
 Identities = 35/52 (67%), Positives = 45/52 (86%)
 Frame = +2

Query: 38  MAAISLLNPKAELARASQALAVNISAAKGIQDVMKTNLGPKGTMKMLVSGAG 193
           MAAI  LNPKAE+AR++ AL++NI+AA+G+QDV+KTNLGPKGTMK+L    G
Sbjct: 1   MAAIKSLNPKAEVARSAAALSLNITAARGLQDVLKTNLGPKGTMKILAVFTG 52



 Score = 35.1 bits (77), Expect = 0.015
 Identities = 17/35 (48%), Positives = 19/35 (54%)
 Frame = +2

Query: 239 QIQHPTASLIARXXXXXXXXXXXXXXXXVLLIGEL 343
           QIQHPTASLIAR                V++IGEL
Sbjct: 170 QIQHPTASLIARVATAQDDITGDGTTSNVMIIGEL 204


>SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
          Length = 505

 Score = 56.8 bits (131), Expect = 4e-09
 Identities = 27/80 (33%), Positives = 42/80 (52%)
 Frame = +2

Query: 104 NISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVLLHEMQIQHPTASLIARXXX 283
           +I AA+ +  ++KT+LGPKG  KM+VS  G++ +T DG  +L  M++ H  A L+     
Sbjct: 35  HILAARAVASILKTSLGPKGMDKMMVSPDGEVTVTNDGATILGMMEVDHQIAKLMVELSK 94

Query: 284 XXXXXXXXXXXXXVLLIGEL 343
                        V+L G L
Sbjct: 95  SQDNEIGDGTTGVVVLAGAL 114


>SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
          Length = 531

 Score = 52.0 bits (119), Expect = 1e-07
 Identities = 32/101 (31%), Positives = 48/101 (47%), Gaps = 2/101 (1%)
 Frame = +2

Query: 47  ISLLNPKAELARASQALAVNISAAKGIQDVMKTNLGPKGTMKMLVSGA--GDIKITKDGN 220
           +S+LN  AE  RA  A   +   A  I D++K+ LGPKG  K+L S    G+I++T DG 
Sbjct: 6   VSILNQGAEEERAETARLSSFVGAIAIGDLVKSTLGPKGMDKILQSFGQNGNIQVTNDGA 65

Query: 221 VLLHEMQIQHPTASLIARXXXXXXXXXXXXXXXXVLLIGEL 343
            +L  + I +P A ++                   +L  EL
Sbjct: 66  TILKSIGIDNPAAKILVELSKVQDDEVGDGTTSVTVLTSEL 106


>SB_22388| Best HMM Match : Extensin_2 (HMM E-Value=0.086)
          Length = 724

 Score = 52.0 bits (119), Expect = 1e-07
 Identities = 25/74 (33%), Positives = 40/74 (54%)
 Frame = +2

Query: 47  ISLLNPKAELARASQALAVNISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVL 226
           I LL    + ++    L  NI A + I D ++T LGP+G  K++V G G   I+ DG  +
Sbjct: 641 IILLKEGTDASQGIPQLISNIDACQFIADAVRTTLGPRGMDKLIVDGRGKATISNDGATI 700

Query: 227 LHEMQIQHPTASLI 268
           ++ + I HP A  +
Sbjct: 701 INLLDIVHPAAKTL 714


>SB_4934| Best HMM Match : NAD_binding_2 (HMM E-Value=4.8)
          Length = 186

 Score = 50.0 bits (114), Expect = 5e-07
 Identities = 21/38 (55%), Positives = 28/38 (73%)
 Frame = +2

Query: 104 NISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDG 217
           NI+AAK + D ++T+LGPKG  KM+  G GD+ IT DG
Sbjct: 29  NITAAKAVADAIRTSLGPKGMDKMIQGGNGDVTITNDG 66


>SB_56262| Best HMM Match : Cpn60_TCP1 (HMM E-Value=6.6e-15)
          Length = 563

 Score = 42.7 bits (96), Expect = 8e-05
 Identities = 18/82 (21%), Positives = 38/82 (46%)
 Frame = +2

Query: 98  AVNISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVLLHEMQIQHPTASLIARX 277
           A  +   +  + ++K + GP G   ML S +G+I IT  G+++L  + + +PT  +I   
Sbjct: 3   AAALQTCQNFERILKKSFGPNGLDVMLRSSSGNILITNSGSMILESLTMGNPTERMIVEA 62

Query: 278 XXXXXXXXXXXXXXXVLLIGEL 343
                          ++++ E+
Sbjct: 63  ARSLSGRTGSGASYFIIILAEI 84


>SB_49248| Best HMM Match : Cpn60_TCP1 (HMM E-Value=1.6)
          Length = 278

 Score = 36.3 bits (80), Expect = 0.007
 Identities = 20/72 (27%), Positives = 34/72 (47%)
 Frame = +2

Query: 59  NPKAELARASQALAVNISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVLLHEM 238
           N   EL   ++A A  +     + D +   LGPKG   ++    G  KITKDG  +   +
Sbjct: 57  NSPKELKFGAEARAAMLQGVDTLADAVAVTLGPKGKNVIIEQSFGGPKITKDGVTVAKAI 116

Query: 239 QIQHPTASLIAR 274
           +++    ++ AR
Sbjct: 117 ELKDKYQNIGAR 128


>SB_25097| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 118

 Score = 32.3 bits (70), Expect = 0.11
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = +2

Query: 203 ITKDGNVLLHEMQIQHPTASLIARXXXXXXXXXXXXXXXXVLLIGE 340
           +T DGN +L E+Q++HP A  +                  ++L GE
Sbjct: 1   MTNDGNAILREIQVKHPAAKSMIEISRTQDEEVGDGTTSVIILAGE 46


>SB_38305| Best HMM Match : CW_binding_1 (HMM E-Value=0.4)
          Length = 1145

 Score = 29.9 bits (64), Expect = 0.58
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +1

Query: 235 DADSTSDCFSNRACFDCTR*CYRRWY 312
           DAD T      + C+ CT  CYR WY
Sbjct: 110 DADPTDP----KVCYPCTEDCYRNWY 131


>SB_47328| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1634

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -1

Query: 131 LEYLWQLKYSQLKPVKPSQVQLWD 60
           ++ LWQL Y   +P++P   Q W+
Sbjct: 899 IQKLWQLGYEWDQPIEPLLAQTWE 922


>SB_23967| Best HMM Match : SRCR (HMM E-Value=5.4e-11)
          Length = 3369

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 82   GFTGFSCEYFSCQRYSRCD 138
            GF G  C Y  C +Y+RC+
Sbjct: 2308 GFLGRGCTYSYCGKYTRCN 2326



 Score = 26.6 bits (56), Expect = 5.4
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = +1

Query: 256  CFSNRACFDCTR*CYRRWYHFNC 324
            CF N  C   T  CYR W   +C
Sbjct: 2258 CFHNGDCIGSTCFCYRGWTGHDC 2280


>SB_56964| Best HMM Match : Zona_pellucida (HMM E-Value=0)
          Length = 908

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 82  GFTGFSCEYFSCQRYSRC 135
           GFTG +CE  +C  Y+ C
Sbjct: 219 GFTGKNCETATCSNYNPC 236


>SB_43497| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 234

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +2

Query: 56  LNPKAELARASQALAV-NISAAKGIQDVMKTNLGPKGTMKMLVSGAG 193
           L+P+  L   + A  + N+   +GI + +   L P+GT+  +   AG
Sbjct: 99  LSPRGTLPYVTCAAGLGNVQGFRGIANEITVKLSPRGTLPYVTCAAG 145



 Score = 26.6 bits (56), Expect = 5.4
 Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +2

Query: 56  LNPKAELARASQALAV-NISAAKGIQDVMKTNLGPKGTMKMLVSGAG 193
           L+P+  L   + A  + N+   +GI + +   L P+GT+  +   AG
Sbjct: 131 LSPRGTLPYVTCAAGLGNVQGFRGIANEITVKLSPRGTLPYVTCAAG 177


>SB_14318| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 341

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -1

Query: 134 HLEYLWQLKYSQLKPVKPSQVQLWD 60
           +L+++WQ   S L P+KP+   + D
Sbjct: 183 NLDHIWQKTLSVLHPLKPTDQHIMD 207


>SB_18401| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 99

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = +2

Query: 47  ISLLNPK-AELARASQALAVNISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNV 223
           IS+  P  ++L +  Q      S  K + D+   +L    T K L +  G IKI  +GNV
Sbjct: 19  ISMSAPTISQLDQTKQQFGRLFSRLKALADICDIHL--LETWKELQTPLGTIKIAPNGNV 76

Query: 224 LL 229
           L+
Sbjct: 77  LM 78


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,648,323
Number of Sequences: 59808
Number of extensions: 165582
Number of successful extensions: 394
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 389
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 510674393
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)