Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_D16
(526 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce... 120 2e-28
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar... 28 0.98
SPBC2F12.11c |rep2||transcriptional activator Rep2|Schizosacchar... 26 3.0
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa... 26 4.0
SPAC1851.03 |ckb1||CK2 family regulatory subunit |Schizosaccharo... 25 6.9
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 25 9.1
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ... 25 9.1
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch... 25 9.1
SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces po... 25 9.1
SPBP8B7.28c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 9.1
>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 259
Score = 120 bits (288), Expect = 2e-28
Identities = 54/84 (64%), Positives = 67/84 (79%)
Frame = +3
Query: 189 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 368
LF R ++F IGQDIQP RDLSRFV+WP+YIR+QR++ +L RLKVPP I QF +TLDK
Sbjct: 26 LFVSRPRSFGIGQDIQPKRDLSRFVKWPEYIRLQRRRKILNLRLKVPPAIAQFQKTLDKN 85
Query: 369 TAKGLFKILEKYRPETEAVRKERL 440
TA +FK+L KYRPET A +K+RL
Sbjct: 86 TATQVFKLLNKYRPETAAEKKQRL 109
>SPBC28E12.03 |rga4||GTPase activating protein
Rga4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 933
Score = 27.9 bits (59), Expect = 0.98
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Frame = +1
Query: 310 SVVSKCRRQSTSSPRH*IKPQPKVCSRSWRNTGQKLRQSGKSVYRKPPKPRLLR-KMSRH 486
S V R Q+TSSP + ++PQ KV + + G S KS Y+ K LL+ K S
Sbjct: 182 SSVLSGRMQNTSSPTNSLRPQLKVQTNGYETPGD--INSAKS-YKDIQKDFLLKPKNSFV 238
Query: 487 RKGQTPYALEPT 522
+ +P A P+
Sbjct: 239 KTSPSPLANGPS 250
>SPBC2F12.11c |rep2||transcriptional activator
Rep2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 219
Score = 26.2 bits (55), Expect = 3.0
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Frame = +1
Query: 316 VSKCRRQSTSSPRH*IKPQPK-VCSRSW-RNTGQKLRQSGKSVYRKPPKPRLLRKMSRHR 489
+++ RQ T P+ + Q K + +R R+ Q+ R++ S R K L R+M R R
Sbjct: 103 IAQLIRQQTDPPQIIHRKQDKGLMARVLSRSKKQEERENHSSDARDAIKSALRRRM-RRR 161
Query: 490 KGQTPYALEPT 522
+G+ AL PT
Sbjct: 162 EGRVQKALRPT 172
>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
Par2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 627
Score = 25.8 bits (54), Expect = 4.0
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +3
Query: 297 KAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILE 398
KAVL LK P IN F + L + +F++LE
Sbjct: 463 KAVLTGILKYWPRINSFKELLFLNEIEDIFEVLE 496
>SPAC1851.03 |ckb1||CK2 family regulatory subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 231
Score = 25.0 bits (52), Expect = 6.9
Identities = 9/13 (69%), Positives = 13/13 (100%)
Frame = +3
Query: 369 TAKGLFKILEKYR 407
TA+GL+K+LEKY+
Sbjct: 94 TAQGLYKMLEKYK 106
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 24.6 bits (51), Expect = 9.1
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +3
Query: 315 RLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETEAVRKERL 440
RL + P+ F KTTAK L + + RP+ E +R L
Sbjct: 455 RLSLNRPVRVFVDN-KKTTAKLLTQEFVRVRPQRELLRPAML 495
>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 24.6 bits (51), Expect = 9.1
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +2
Query: 173 EDCKPSIREENKELCY 220
E CK + + NKELCY
Sbjct: 947 EACKACLLQGNKELCY 962
>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 297
Score = 24.6 bits (51), Expect = 9.1
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Frame = +2
Query: 74 ELKSIQDGXXXXXXXDREKSSGRSTCGEES*A-QEDCKPSIREENKELC 217
ELKS+ +G D S S C +E + KPS + K+ C
Sbjct: 215 ELKSVNEGSSCCSKKDSSPSEKPSCCSQEKKSCCSSKKPSCCSQEKKGC 263
>SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 330
Score = 24.6 bits (51), Expect = 9.1
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -1
Query: 307 NTAF*RWMRIYFGHRTKRDRSLVGWMSWPIAKF 209
N F R +R+YF + DRSL + W ++
Sbjct: 171 NANFLRQLRVYFECNYQLDRSLRPYRQWLFRRY 203
>SPBP8B7.28c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 215
Score = 24.6 bits (51), Expect = 9.1
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +1
Query: 340 TSSPRH*IKPQPKVCSRSWRNTGQKLRQSGKSV 438
+ + RH + P+ ++C S RN G +S K V
Sbjct: 106 SKAQRHVLDPRCQICVHSQRNDGDDNLESDKFV 138
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,008,184
Number of Sequences: 5004
Number of extensions: 37635
Number of successful extensions: 105
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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