Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_D16
         (526 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)             128   4e-30
SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24)        36   0.027
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.44 
SB_49583| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.77 
SB_24471| Best HMM Match : Lectin_C (HMM E-Value=2.7e-12)              29   2.3  
SB_27024| Best HMM Match : Pkinase (HMM E-Value=4.7e-25)               28   5.4  
SB_19395| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_4001| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0056)           27   7.2  
SB_46036| Best HMM Match : PSRT (HMM E-Value=1)                        27   7.2  
SB_18529| Best HMM Match : DUF1388 (HMM E-Value=3.5)                   27   7.2  
SB_54431| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  
SB_16708| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  

>SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 263

 Score =  128 bits (308), Expect = 4e-30
 Identities = 59/111 (53%), Positives = 75/111 (67%)
 Frame = +3

Query: 189 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 368
           L EKR +NF IG DIQP RDLSRFVRWP+Y+++QRQK++L +RLKVPP INQFTQ LD+ 
Sbjct: 31  LIEKRPRNFGIGGDIQPKRDLSRFVRWPRYVKLQRQKSLLYQRLKVPPAINQFTQALDRQ 90

Query: 369 TAKGLFKILEKYRPETEAVRKERLQXXXXXXXXXXXXXXXXRPNTLRAGTN 521
           +   LFK+L KYRPET+A +K RL                 +P  ++ G N
Sbjct: 91  STVQLFKLLHKYRPETKAEKKARLSAKAEKKAEGKEEAPGKKPMLVKYGIN 141


>SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24)
          Length = 172

 Score = 35.5 bits (78), Expect = 0.027
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = +3

Query: 381 LFKILEKYRPETEAVRKERLQXXXXXXXXXXXXXXXXRPNTLRAGTN 521
           LFK+L KYRPET+A +K RL                 +P  ++ G N
Sbjct: 4   LFKLLHKYRPETKAEKKARLSAKAEKKAEGKEEAPGKKPMLVKYGIN 50


>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1272

 Score = 31.5 bits (68), Expect = 0.44
 Identities = 34/115 (29%), Positives = 46/115 (40%)
 Frame = +2

Query: 119  DREKSSGRSTCGEES*AQEDCKPSIREENKELCYWPGHPANQRSIPFRAMAEIYSHPASK 298
            DR+KS+GR++      A +  K S R E++ +   P      R     A  E  SH  S 
Sbjct: 978  DRQKSNGRNSRSVSPSAVKRTKGSKRSESRSVSRSPERDRKGRD---SAKKERQSHSESP 1034

Query: 299  GCVTASSQSAAANQPVHPDIR*NHSQRSVQDLGEIQARN*GSQERASTESRRSQG 463
              VT SS+     +P H   R      S       Q R   S  R   + RRS+G
Sbjct: 1035 QRVTKSSKERPRKRPRHQS-RERRPSSSPPRRSRPQ-RTSPSPRRTPEDRRRSRG 1087


>SB_49583| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 163

 Score = 30.7 bits (66), Expect = 0.77
 Identities = 15/32 (46%), Positives = 17/32 (53%)
 Frame = +2

Query: 125 EKSSGRSTCGEES*AQEDCKPSIREENKELCY 220
           EK  G  TCG+ES    DC P  +E   E CY
Sbjct: 94  EKKEGCYTCGDESHIARDC-PEKKESPGESCY 124


>SB_24471| Best HMM Match : Lectin_C (HMM E-Value=2.7e-12)
          Length = 695

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = +1

Query: 367 PQPKVCSRSWRNTGQKLRQSGKSVYRKPPKPRLLRKMSRHRKGQTP 504
           P P + S  ++N   + R   +   R PP+P+ L++  +  +G  P
Sbjct: 557 PPPSIDSSEYQNQKHRKRPRHRQRDRHPPQPQYLQEYQQQAQGMYP 602


>SB_27024| Best HMM Match : Pkinase (HMM E-Value=4.7e-25)
          Length = 1595

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +1

Query: 331 RQSTSSPRH*IKPQPKVCSRSWRNT-GQKLRQSGKSVYRKP 450
           RQ  S P H +    +V +R+W  T GQ +   GK  +R P
Sbjct: 734 RQEESCPGHRVLCMARVGTRTWLGTEGQTIEVFGKRSWRLP 774


>SB_19395| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 832

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = +3

Query: 252 SRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEK 401
           SR  RW  Y R+   KA+LQR  ++   I Q T  + K        +L K
Sbjct: 508 SRTFRWDPYSRMSTLKALLQRMEQLKTQIVQETCEIKKLEKLSRLVLLRK 557


>SB_4001| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0056)
          Length = 508

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
 Frame = +2

Query: 251 IPFRAMAEIYSHPA-SKGCVTASSQSAAANQPVHPDIR*NHSQRSVQDLGEIQA 409
           +P     +   HP  S GC T SS S  A  PV PD    + Q     L E+ A
Sbjct: 65  LPVVTTVDSTGHPQLSSGCSTNSSSSQTAPFPVIPDTIIANMQSLFAKLDELYA 118


>SB_46036| Best HMM Match : PSRT (HMM E-Value=1)
          Length = 878

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 27/98 (27%), Positives = 40/98 (40%), Gaps = 4/98 (4%)
 Frame = +1

Query: 193 SRREQRTLLLAR----TSSQPEIYPVSCDGRNIFASSVKRLCYSVVSKCRRQSTSSPRH* 360
           SRR+  T  L R     S    + P S  G++      K    S  S  +R+++ + R  
Sbjct: 501 SRRDNSTSPLPRQTRRVSPTQAVRPSSTQGQSAPVGRTKSPSRSYTSPRQRRTSPNNR-- 558

Query: 361 IKPQPKVCSRSWRNTGQKLRQSGKSVYRKPPKPRLLRK 474
             P P+  S S R      R+   S  RK P PR + +
Sbjct: 559 -SPPPRRRSPSPRRPSPSPRRRSTSPSRKSPPPRRVHR 595


>SB_18529| Best HMM Match : DUF1388 (HMM E-Value=3.5)
          Length = 435

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 16/55 (29%), Positives = 26/55 (47%)
 Frame = +1

Query: 328 RRQSTSSPRH*IKPQPKVCSRSWRNTGQKLRQSGKSVYRKPPKPRLLRKMSRHRK 492
           R +  + PR   +P+P+  +++ R T  K   S K+      K  L  K SR+ K
Sbjct: 148 RPRQAARPRQASRPRPRGNTKTSRKTSHKTETSRKTKTSLKTKTSLKTKTSRNTK 202


>SB_54431| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1023

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 16/39 (41%), Positives = 19/39 (48%)
 Frame = +2

Query: 293 SKGCVTASSQSAAANQPVHPDIR*NHSQRSVQDLGEIQA 409
           S GC T SS S  A  PV PD    + Q  +  L E+ A
Sbjct: 286 SSGCSTNSSSSQTARFPVIPDTIIANMQSLLPKLDELYA 324


>SB_16708| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 516

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +1

Query: 331 RQSTSSPRH*IKPQPKVCSRSWRNTGQKLRQSGKSVYRKP 450
           R ST SP   + P P + + S +  G   +QS ++  +KP
Sbjct: 184 RTSTPSPELRVSPSPTLKTESTQTKGTTSQQSTQTAKKKP 223


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,308,245
Number of Sequences: 59808
Number of extensions: 294197
Number of successful extensions: 767
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 764
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1184975377
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)