Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_D16
         (526 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S ...   119   1e-27
At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)           118   2e-27
At5g64290.1 68418.m08076 oxoglutarate/malate translocator, putat...    29   1.4  
At1g27340.1 68414.m03330 F-box family protein contains Pfam PF00...    28   4.4  
At2g46610.2 68415.m05813 arginine/serine-rich splicing factor, p...    27   5.8  
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p...    27   5.8  

>At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S
           RIBOSOMAL PROTEIN L7A - Oryza sativa,
           SWISSPROT:RL7A_ORYSA
          Length = 256

 Score =  119 bits (286), Expect = 1e-27
 Identities = 53/84 (63%), Positives = 67/84 (79%)
 Frame = +3

Query: 189 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 368
           LFE+R K F IG  + P +DLSR+++WPK IR+QRQK +L++RLKVPP +NQFT+TLDK 
Sbjct: 22  LFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRILKQRLKVPPALNQFTKTLDKN 81

Query: 369 TAKGLFKILEKYRPETEAVRKERL 440
            A  LFKIL KYRPE +A +KERL
Sbjct: 82  LATSLFKILLKYRPEDKAAKKERL 105


>At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)
          Length = 257

 Score =  118 bits (285), Expect = 2e-27
 Identities = 52/84 (61%), Positives = 67/84 (79%)
 Frame = +3

Query: 189 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 368
           LFE+R K F IG  + P +DLSR+++WPK IR+QRQK +L++RLKVPP +NQFT+TLDK 
Sbjct: 23  LFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRILKQRLKVPPALNQFTKTLDKN 82

Query: 369 TAKGLFKILEKYRPETEAVRKERL 440
            A  LFK+L KYRPE +A +KERL
Sbjct: 83  LATSLFKVLLKYRPEDKAAKKERL 106


>At5g64290.1 68418.m08076 oxoglutarate/malate translocator, putative
           similar to SWISS-PROT:Q41364 2-oxoglutarate/malate
           translocator, chloroplast precursor. [Spinach]{Spinacia
           oleracea}
          Length = 563

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -1

Query: 430 FLTASVSGLYFSKILNRPLAVVLSNVWVNW 341
           FLTA+   L   K+    L VV+SN WV+W
Sbjct: 280 FLTAAAQNLLCLKLAEE-LGVVISNPWVSW 308


>At1g27340.1 68414.m03330 F-box family protein contains Pfam
           PF00646: F-box domain; similar to fim protein; similar
           to ESTs gb|T42445, gb|T76780, gb|AA650733, and
           emb|Z17748
          Length = 467

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 378 GLFKILEKYRPETEAVRKERLQ 443
           G+FK+LE  +P  +  RKER Q
Sbjct: 77  GIFKMLETVKPPVKRTRKERTQ 98


>At2g46610.2 68415.m05813 arginine/serine-rich splicing factor,
           putative similar to SP|P92964 Arginine/serine-rich
           splicing factor RSP31 {Arabidopsis thaliana}
          Length = 224

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
 Frame = +1

Query: 388 RSWRNTGQKLRQSGKSVYRKPPKPRLLRKMS---RHRKGQTPY 507
           R  R  G + R+S   VYR+ P P   R+ S      KG  PY
Sbjct: 145 REDRYAGSRRRRSPSPVYRRRPSPDYTRRRSPEYDRYKGPAPY 187


>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
           putative similar to SP|P92964 Arginine/serine-rich
           splicing factor RSP31 {Arabidopsis thaliana}
          Length = 250

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
 Frame = +1

Query: 388 RSWRNTGQKLRQSGKSVYRKPPKPRLLRKMS---RHRKGQTPY 507
           R  R  G + R+S   VYR+ P P   R+ S      KG  PY
Sbjct: 171 REDRYAGSRRRRSPSPVYRRRPSPDYTRRRSPEYDRYKGPAPY 213


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,772,256
Number of Sequences: 28952
Number of extensions: 208147
Number of successful extensions: 563
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 563
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 967280384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)