BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= S06A01NCLL0001_D15 (184 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni... 23 4.0 SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase Ubp9|Schizosac... 23 7.0 SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 22 9.3 >SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit Ctf18|Schizosaccharomyces pombe|chr 2|||Manual Length = 960 Score = 23.4 bits (48), Expect = 4.0 Identities = 9/18 (50%), Positives = 11/18 (61%) Frame = +1 Query: 109 AFVVYLTPPPPAPLYGTL 162 A ++Y PPP A L G L Sbjct: 546 AQIIYFRPPPQASLVGRL 563 >SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase Ubp9|Schizosaccharomyces pombe|chr 2|||Manual Length = 585 Score = 22.6 bits (46), Expect = 7.0 Identities = 9/37 (24%), Positives = 17/37 (45%) Frame = -2 Query: 120 HDECYVTLVFNHSKQXXXXXXXXNKTMRILFMSYYIV 10 HD+ + T+VF + + R+ ++S IV Sbjct: 329 HDKLFYTIVFTNEMRLFTTTEDAENAERMYYLSSVIV 365 >SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1|||Manual Length = 1841 Score = 22.2 bits (45), Expect = 9.3 Identities = 7/12 (58%), Positives = 9/12 (75%) Frame = +1 Query: 115 VVYLTPPPPAPL 150 + + TPPPP PL Sbjct: 902 ITHPTPPPPPPL 913 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 663,722 Number of Sequences: 5004 Number of extensions: 8031 Number of successful extensions: 11 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 11 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 11 length of database: 2,362,478 effective HSP length: 41 effective length of database: 2,157,314 effective search space used: 40988966 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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