Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_D15
         (184 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0603 - 19120434-19120538,19121209-19121310,19121430-191214...    28   1.2  
01_07_0010 + 40429613-40429677,40429702-40430015,40432150-40434386     27   1.6  
10_08_0199 + 15721585-15722109,15722135-15722740,15723084-157232...    26   4.9  
11_06_0683 + 26259129-26259968                                         25   6.5  
09_06_0124 + 21008773-21009522,21009624-21009746                       25   8.6  
07_03_0222 + 15352972-15353589,15355476-15355616,15355741-15355854     25   8.6  
06_02_0169 - 12535102-12536062,12536949-12537646                       25   8.6  
05_06_0079 + 25415534-25415582,25415679-25415749,25415852-254159...    25   8.6  

>10_08_0603 -
           19120434-19120538,19121209-19121310,19121430-19121462,
           19122049-19122216,19122311-19122373,19122514-19122624,
           19122926-19123035,19123150-19123446,19123632-19123710,
           19123811-19123919,19124000-19124041,19124743-19124873,
           19126150-19126797
          Length = 665

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = -3

Query: 161 NVPYKGAGGGGVRYTTNATS 102
           NVP  G GGGGV  TT  T+
Sbjct: 8   NVPVDGEGGGGVVTTTTTTT 27


>01_07_0010 + 40429613-40429677,40429702-40430015,40432150-40434386
          Length = 871

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +1

Query: 100 CDVAFVVYLTPPPPAPLY 153
           C   FV   TPPP AP+Y
Sbjct: 330 CQTEFVAVETPPPTAPVY 347


>10_08_0199 +
           15721585-15722109,15722135-15722740,15723084-15723273,
           15723907-15724175
          Length = 529

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -3

Query: 161 NVPYKGAGGGGVRYTTNATSH 99
           +V   G GGGG R  T +TSH
Sbjct: 269 DVVVDGGGGGGPRKITRSTSH 289


>11_06_0683 + 26259129-26259968
          Length = 279

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +1

Query: 121 YLTPPPPAPLYG 156
           +L+PPPP P YG
Sbjct: 218 HLSPPPPPPCYG 229


>09_06_0124 + 21008773-21009522,21009624-21009746
          Length = 290

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = +1

Query: 133 PPPAPLYGTLELG 171
           PPPAPL  T ELG
Sbjct: 26  PPPAPLLDTSELG 38


>07_03_0222 + 15352972-15353589,15355476-15355616,15355741-15355854
          Length = 290

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = +1

Query: 127 TPPPPAPLYGTLELG 171
           T PPPAPL    ELG
Sbjct: 22  TDPPPAPLIDAAELG 36


>06_02_0169 - 12535102-12536062,12536949-12537646
          Length = 552

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 103 DVAFVVYLTPPPPAPLYGTL 162
           +VA  +   PPPP P YG L
Sbjct: 265 EVAAALSRPPPPPRPSYGLL 284


>05_06_0079 +
           25415534-25415582,25415679-25415749,25415852-25415928,
           25416190-25416337,25416980-25417141,25417552-25417989
          Length = 314

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 96  LV*RSIRRVPYPPPSGPLIRNIG 164
           LV R +RRV +PP SG  +   G
Sbjct: 206 LVRRRLRRVAFPPGSGVTVTGTG 228


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,825,932
Number of Sequences: 37544
Number of extensions: 87900
Number of successful extensions: 641
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 641
length of database: 14,793,348
effective HSP length: 40
effective length of database: 13,291,588
effective search space used: 265831760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)