Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_D15
         (184 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6995| Best HMM Match : DUF740 (HMM E-Value=2.4)                     25   7.4  
SB_23458| Best HMM Match : MCPVI (HMM E-Value=1.4)                     25   9.8  

>SB_6995| Best HMM Match : DUF740 (HMM E-Value=2.4)
          Length = 671

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = +2

Query: 128 PPPLRPPYTEHW 163
           PPPL PP TE W
Sbjct: 16  PPPLVPPTTEPW 27


>SB_23458| Best HMM Match : MCPVI (HMM E-Value=1.4)
          Length = 770

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 12/20 (60%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
 Frame = +3

Query: 123 PYPPPSGPLI-RNIGVRSKK 179
           P PPP GPL  RN GV  +K
Sbjct: 666 PLPPPRGPLRGRNGGVHRRK 685


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,176,407
Number of Sequences: 59808
Number of extensions: 64465
Number of successful extensions: 208
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 16,821,457
effective HSP length: 39
effective length of database: 14,488,945
effective search space used: 304267845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)