Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_D15
         (184 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z96102-5|CAB54262.2| 1096|Caenorhabditis elegans Hypothetical pr...    25   7.1  
Z96102-4|CAB54263.1| 1192|Caenorhabditis elegans Hypothetical pr...    25   7.1  
Z81027-6|CAB54178.2| 1096|Caenorhabditis elegans Hypothetical pr...    25   7.1  
Z81027-5|CAB54179.1| 1192|Caenorhabditis elegans Hypothetical pr...    25   7.1  
U40858-1|AAA83272.1| 1096|Caenorhabditis elegans serine/threonin...    25   7.1  
U22183-1|AAA97437.1| 1192|Caenorhabditis elegans serine/threonin...    25   7.1  
AF043702-4|AAK21494.2|  430|Caenorhabditis elegans Hypothetical ...    25   9.4  

>Z96102-5|CAB54262.2| 1096|Caenorhabditis elegans Hypothetical
           protein H39E23.1b protein.
          Length = 1096

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -3

Query: 173 TPNSNVPYKGAGGGGVRYTTNATSH 99
           T +S  P   +GG   RY+++  SH
Sbjct: 62  TASSGAPAASSGGSSARYSSSGRSH 86


>Z96102-4|CAB54263.1| 1192|Caenorhabditis elegans Hypothetical
           protein H39E23.1a protein.
          Length = 1192

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -3

Query: 173 TPNSNVPYKGAGGGGVRYTTNATSH 99
           T +S  P   +GG   RY+++  SH
Sbjct: 110 TASSGAPAASSGGSSARYSSSGRSH 134


>Z81027-6|CAB54178.2| 1096|Caenorhabditis elegans Hypothetical
           protein H39E23.1b protein.
          Length = 1096

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -3

Query: 173 TPNSNVPYKGAGGGGVRYTTNATSH 99
           T +S  P   +GG   RY+++  SH
Sbjct: 62  TASSGAPAASSGGSSARYSSSGRSH 86


>Z81027-5|CAB54179.1| 1192|Caenorhabditis elegans Hypothetical
           protein H39E23.1a protein.
          Length = 1192

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -3

Query: 173 TPNSNVPYKGAGGGGVRYTTNATSH 99
           T +S  P   +GG   RY+++  SH
Sbjct: 110 TASSGAPAASSGGSSARYSSSGRSH 134


>U40858-1|AAA83272.1| 1096|Caenorhabditis elegans serine/threonine
           kinase protein.
          Length = 1096

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -3

Query: 173 TPNSNVPYKGAGGGGVRYTTNATSH 99
           T +S  P   +GG   RY+++  SH
Sbjct: 62  TASSGAPAASSGGSSARYSSSGRSH 86


>U22183-1|AAA97437.1| 1192|Caenorhabditis elegans serine/threonine
           kinase protein.
          Length = 1192

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -3

Query: 173 TPNSNVPYKGAGGGGVRYTTNATSH 99
           T +S  P   +GG   RY+++  SH
Sbjct: 110 TASSGAPAASSGGSSARYSSSGRSH 134


>AF043702-4|AAK21494.2|  430|Caenorhabditis elegans Hypothetical
           protein W03D8.8 protein.
          Length = 430

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = +1

Query: 76  LFRMIKD*CDVAFVVYLTPPPPAPLYGTLEL 168
           LF  +K   D A+  YL   PP P Y  LEL
Sbjct: 76  LFLGMKPCEDFAYGGYLRCTPPVPFYYLLEL 106


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,893,434
Number of Sequences: 27780
Number of extensions: 56284
Number of successful extensions: 250
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 250
length of database: 12,740,198
effective HSP length: 41
effective length of database: 11,601,218
effective search space used: 220423142
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)