Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_D15
         (184 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g13290.1 68416.m01673 transducin family protein / WD-40 repea...    27   1.7  
At1g12040.1 68414.m01390 leucine-rich repeat family protein / ex...    22   4.5  
At3g22800.1 68416.m02874 leucine-rich repeat family protein / ex...    23   4.7  
At5g01850.1 68418.m00104 protein kinase, putative similar to pro...    25   5.3  
At3g08630.1 68416.m01002 expressed protein                             25   5.3  
At2g03500.1 68415.m00309 myb family transcription factor contain...    25   9.3  

>At3g13290.1 68416.m01673 transducin family protein / WD-40 repeat
           family protein contains 2 WD-40 repeats (PF00400);
           autoantigen locus HUMAUTANT (GI:533202) [Homo sapiens]
           and autoantigen locus HSU17474 (GI:596134) [Homo
           sapiens]
          Length = 1322

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +3

Query: 123 PYPPPSGPLIRN 158
           PYPPP+GP + N
Sbjct: 28  PYPPPTGPFLNN 39


>At1g12040.1 68414.m01390 leucine-rich repeat family protein /
           extensin family protein (LRX1) similar to extensin-like
           protein [Lycopersicon esculentum]
           gi|5917664|gb|AAD55979; contains leucine-rich repeats,
           Pfam:PF00560; contains proline rich extensin domains,
           INTERPRO:IPR002965
          Length = 744

 Score = 22.2 bits (45), Expect(2) = 4.5
 Identities = 6/9 (66%), Positives = 9/9 (100%)
 Frame = +1

Query: 127 TPPPPAPLY 153
           +PPPP+P+Y
Sbjct: 551 SPPPPSPVY 559



 Score = 21.8 bits (44), Expect(2) = 4.5
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +1

Query: 118 VYLTPPPPAP 147
           VY +PPPP P
Sbjct: 518 VYSSPPPPPP 527


>At3g22800.1 68416.m02874 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycsimilar to extensin-like protein [Lycopersicon
           esculentum] gi|5917664|gb|AAD55979; contains
           leucine-rich repeats, Pfam:PF00560; contains proline
           rich extensin domains, INTERPRO:IPR002965
          Length = 470

 Score = 22.6 bits (46), Expect(2) = 4.7
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +1

Query: 121 YLTPPPPAPLY 153
           Y+ PPPP+P Y
Sbjct: 432 YVYPPPPSPPY 442



 Score = 21.4 bits (43), Expect(2) = 4.7
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +1

Query: 118 VYLTPPPPAP 147
           VY +PPPP P
Sbjct: 409 VYPSPPPPPP 418


>At5g01850.1 68418.m00104 protein kinase, putative similar to
           protein kinase [Arabidopsis thaliana]
           gi|1054633|emb|CAA63387; contains protein kinase domain,
           Pfam:PF00069
          Length = 333

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +1

Query: 112 FVVYLTPPPPAPL 150
           F++ LTPPPP PL
Sbjct: 282 FLLTLTPPPPQPL 294


>At3g08630.1 68416.m01002 expressed protein
          Length = 339

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 182 SFFTPNSNVPYKGAGGGG 129
           +F +PN  VP  G GGGG
Sbjct: 49  NFSSPNIMVPCAGGGGGG 66


>At2g03500.1 68415.m00309 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 432

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +1

Query: 121 YLTPPPPAPLY 153
           Y TPPPP PL+
Sbjct: 355 YTTPPPPQPLH 365


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,565,831
Number of Sequences: 28952
Number of extensions: 52112
Number of successful extensions: 423
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 254
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 423
length of database: 12,070,560
effective HSP length: 40
effective length of database: 10,912,480
effective search space used: 218249600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)