Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_D14
         (157 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub...    31   0.027
SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A...    30   0.036
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2...    30   0.036
SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA syntheta...    24   2.4  
SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|ch...    23   7.2  
SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S...    22   9.5  

>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 30.7 bits (66), Expect = 0.027
 Identities = 12/19 (63%), Positives = 16/19 (84%)
 Frame = +3

Query: 63  MRYVAAYLLAVLGGKASPA 119
           M+Y+AAYLL  +GGK SP+
Sbjct: 1   MKYLAAYLLLTVGGKQSPS 19


>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 30.3 bits (65), Expect = 0.036
 Identities = 12/19 (63%), Positives = 16/19 (84%)
 Frame = +3

Query: 63  MRYVAAYLLAVLGGKASPA 119
           M+Y+AAYLL  +GGK SP+
Sbjct: 1   MKYLAAYLLLTVGGKDSPS 19


>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 110

 Score = 30.3 bits (65), Expect = 0.036
 Identities = 12/19 (63%), Positives = 16/19 (84%)
 Frame = +3

Query: 63  MRYVAAYLLAVLGGKASPA 119
           M+Y+AAYLL  +GGK SP+
Sbjct: 1   MKYLAAYLLLTVGGKNSPS 19


>SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA synthetases
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 450

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = +3

Query: 12  RTFCFRQYTYRVLAT*KMRYVAAYLLAVLGGKASP 116
           + FC  +Y Y++  T K  Y+  +    L    SP
Sbjct: 7   KEFCVLKYPYKLFITHKFSYLLRFETVTLNNIRSP 41


>SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 530

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = -1

Query: 67  RIF*VAKTRYVYCRKQNVR 11
           R+F + + RY YCR+++VR
Sbjct: 302 RLF-LMERRYYYCRQRSVR 319


>SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor
           Vma6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = +2

Query: 8   ETNILFSAIHVSCLSDLKNALRGRVFTRRVGRQSVPSVLLMSKRSS 145
           E+N+LF   H +  +DL+N             +S+ + L  S+R +
Sbjct: 408 ESNVLFPGNHSNSQTDLRNGDAVSTVANNKRLRSLSTYLTDSRRKA 453


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 635,193
Number of Sequences: 5004
Number of extensions: 8178
Number of successful extensions: 16
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 2,362,478
effective HSP length: 32
effective length of database: 2,202,350
effective search space used: 41844650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)