Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_D14
         (157 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0321 + 16757414-16757743                                         33   0.042
07_01_1001 - 8460467-8460799                                           33   0.042
05_05_0028 + 21691137-21691224,21691539-21691765,21692135-21692161     31   0.096
05_03_0104 - 8426374-8426542,8426656-8426828,8427020-8427103,842...    27   2.1  
02_04_0074 - 19474786-19474812,19475174-19475400,19476362-194764...    27   2.1  
03_06_0194 + 32249846-32250562                                         27   2.7  
01_01_0642 + 4852218-4852305,4852655-4852884,4853103-4853129           27   2.7  
03_01_0100 - 791425-792996                                             25   8.3  
01_06_1321 + 36280691-36281269                                         25   8.3  

>07_03_0321 + 16757414-16757743
          Length = 109

 Score = 32.7 bits (71), Expect = 0.042
 Identities = 13/18 (72%), Positives = 16/18 (88%)
 Frame = +3

Query: 63  MRYVAAYLLAVLGGKASP 116
           MR+VAAYL+A +GG ASP
Sbjct: 1   MRFVAAYLMATIGGNASP 18


>07_01_1001 - 8460467-8460799
          Length = 110

 Score = 32.7 bits (71), Expect = 0.042
 Identities = 13/18 (72%), Positives = 16/18 (88%)
 Frame = +3

Query: 63  MRYVAAYLLAVLGGKASP 116
           MR+VAAYL+A +GG ASP
Sbjct: 1   MRFVAAYLMATIGGNASP 18


>05_05_0028 + 21691137-21691224,21691539-21691765,21692135-21692161
          Length = 113

 Score = 31.5 bits (68), Expect = 0.096
 Identities = 13/19 (68%), Positives = 16/19 (84%)
 Frame = +3

Query: 63  MRYVAAYLLAVLGGKASPA 119
           M+ +AAYLLAVLGG  SP+
Sbjct: 1   MKLIAAYLLAVLGGNTSPS 19


>05_03_0104 -
           8426374-8426542,8426656-8426828,8427020-8427103,
           8427110-8427205,8427530-8427616,8428639-8428767,
           8428922-8429098,8429185-8429295,8429642-8429761,
           8430767-8432427,8432485-8432867,8433707-8434470,
           8434532-8434813,8436158-8436493
          Length = 1523

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 92  RVGRQSVPSVLLMSKRSSALWG 157
           R G+QS  S+LL +KR   +WG
Sbjct: 138 RQGQQSCASLLLQAKRRRRIWG 159


>02_04_0074 -
           19474786-19474812,19475174-19475400,19476362-19476496,
           19478662-19479193
          Length = 306

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = +3

Query: 60  KMRYVAAYLLAVLGGKASPA 119
           +M++++AYLLA L G  +P+
Sbjct: 193 RMKFISAYLLATLAGNPNPS 212


>03_06_0194 + 32249846-32250562
          Length = 238

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 146 LRIFSTSAARWGRFAAQHGE*IRG 75
           L +   SA RWG+ A +HG  +RG
Sbjct: 211 LHVLDASAQRWGQAAGRHGR-LRG 233


>01_01_0642 + 4852218-4852305,4852655-4852884,4853103-4853129
          Length = 114

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = +3

Query: 63  MRYVAAYLLAVLGGKASP 116
           M++++AYL+A L G +SP
Sbjct: 1   MKFISAYLMAYLAGNSSP 18


>03_01_0100 - 791425-792996
          Length = 523

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +2

Query: 50  SDLKNALRGRVFTRRVGRQSVPSVLL 127
           +DL+N L+GR +  R+GR    S LL
Sbjct: 211 ADLENFLKGRAYYHRLGRVWRRSYLL 236


>01_06_1321 + 36280691-36281269
          Length = 192

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +1

Query: 76  PRIYSPCWAAKRPQRAAD 129
           P +Y PC+AAK P  AA+
Sbjct: 159 PAMYVPCFAAKPPLDAAN 176


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,369,860
Number of Sequences: 37544
Number of extensions: 60520
Number of successful extensions: 154
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 14,793,348
effective HSP length: 32
effective length of database: 13,591,940
effective search space used: 258246860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)