Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_D14
         (157 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.19 
SB_35563| Best HMM Match : Keratin_B2 (HMM E-Value=3.3)                25   7.3  
SB_11653| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.7  

>SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 762

 Score = 30.7 bits (66), Expect = 0.19
 Identities = 13/19 (68%), Positives = 15/19 (78%)
 Frame = +3

Query: 63  MRYVAAYLLAVLGGKASPA 119
           MRYVAAYLLA LG   +P+
Sbjct: 650 MRYVAAYLLATLGNNKNPS 668


>SB_35563| Best HMM Match : Keratin_B2 (HMM E-Value=3.3)
          Length = 138

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +3

Query: 63  MRYVAAYLLAVLGGKASPACC*CRKDPQLC 152
           +R    YL  +L  + +P C  C ++P LC
Sbjct: 12  LRRNGGYLNVILPHRRAPLCHACYREPPLC 41


>SB_11653| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1867

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = +2

Query: 77   RVFTRRVGRQSVPSVLLMSK 136
            +VF+RR+GR S PS+ L S+
Sbjct: 974  QVFSRRLGRCSDPSIKLKSE 993


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,002,940
Number of Sequences: 59808
Number of extensions: 64949
Number of successful extensions: 149
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 16,821,457
effective HSP length: 31
effective length of database: 14,967,409
effective search space used: 299348180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)