Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_D14
         (157 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132865-1|CAB60595.1|  110|Caenorhabditis elegans Hypothetical ...    35   0.007
U97194-7|AAB52450.2|  107|Caenorhabditis elegans Hypothetical pr...    32   0.048
AY099352-1|AAM34494.1|  891|Caenorhabditis elegans gamma-tubulin...    27   2.4  
AF040644-3|AAP82651.1|  336|Caenorhabditis elegans Gamma-tubulin...    27   2.4  
AF040644-2|AAN63399.1|  963|Caenorhabditis elegans Gamma-tubulin...    27   2.4  
AF040644-1|AAB94969.2|  891|Caenorhabditis elegans Gamma-tubulin...    27   2.4  
Z81094-6|CAB03154.1|  666|Caenorhabditis elegans Hypothetical pr...    25   9.6  

>AL132865-1|CAB60595.1|  110|Caenorhabditis elegans Hypothetical
           protein Y62E10A.1 protein.
          Length = 110

 Score = 35.1 bits (77), Expect = 0.007
 Identities = 15/18 (83%), Positives = 17/18 (94%)
 Frame = +3

Query: 63  MRYVAAYLLAVLGGKASP 116
           MRYV+AYLLAVLGG A+P
Sbjct: 1   MRYVSAYLLAVLGGNANP 18


>U97194-7|AAB52450.2|  107|Caenorhabditis elegans Hypothetical
           protein C37A2.7 protein.
          Length = 107

 Score = 32.3 bits (70), Expect = 0.048
 Identities = 13/19 (68%), Positives = 16/19 (84%)
 Frame = +3

Query: 63  MRYVAAYLLAVLGGKASPA 119
           M+Y+ AYLLA LGG ASP+
Sbjct: 1   MKYLGAYLLATLGGNASPS 19


>AY099352-1|AAM34494.1|  891|Caenorhabditis elegans gamma-tubulin
           ring protein GRIP-1 protein.
          Length = 891

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 59  KNALRGRVFTRRVGRQSVPSVLLMSKRSSA 148
           ++A RGRV +   G Q  PS+   S RS A
Sbjct: 130 RSASRGRVLSTLTGDQQTPSIADSSSRSRA 159


>AF040644-3|AAP82651.1|  336|Caenorhabditis elegans Gamma-tubulin
           interacting proteinprotein 1, isoform c protein.
          Length = 336

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 59  KNALRGRVFTRRVGRQSVPSVLLMSKRSSA 148
           ++A RGRV +   G Q  PS+   S RS A
Sbjct: 130 RSASRGRVLSTLTGDQQTPSIADSSSRSRA 159


>AF040644-2|AAN63399.1|  963|Caenorhabditis elegans Gamma-tubulin
           interacting proteinprotein 1, isoform b protein.
          Length = 963

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 59  KNALRGRVFTRRVGRQSVPSVLLMSKRSSA 148
           ++A RGRV +   G Q  PS+   S RS A
Sbjct: 130 RSASRGRVLSTLTGDQQTPSIADSSSRSRA 159


>AF040644-1|AAB94969.2|  891|Caenorhabditis elegans Gamma-tubulin
           interacting proteinprotein 1, isoform a protein.
          Length = 891

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 59  KNALRGRVFTRRVGRQSVPSVLLMSKRSSA 148
           ++A RGRV +   G Q  PS+   S RS A
Sbjct: 130 RSASRGRVLSTLTGDQQTPSIADSSSRSRA 159


>Z81094-6|CAB03154.1|  666|Caenorhabditis elegans Hypothetical
           protein F58G11.3a protein.
          Length = 666

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +2

Query: 98  GRQSVPSVLLMSKRSSAL 151
           GRQSVPSVL +S  S+ +
Sbjct: 437 GRQSVPSVLSISSSSTVV 454


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,586,149
Number of Sequences: 27780
Number of extensions: 47401
Number of successful extensions: 81
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 12,740,198
effective HSP length: 32
effective length of database: 11,851,238
effective search space used: 225173522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)