Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_D14
(157 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g27710.3 68415.m03359 60S acidic ribosomal protein P2 (RPP2B) 33 0.034
At2g27710.2 68415.m03358 60S acidic ribosomal protein P2 (RPP2B) 33 0.034
At2g27710.1 68415.m03357 60S acidic ribosomal protein P2 (RPP2B) 33 0.034
At2g27720.1 68415.m03360 60S acidic ribosomal protein P2 (RPP2A) 31 0.10
At3g44590.2 68416.m04793 60S acidic ribosomal protein P2 (RPP2D)... 29 0.42
At3g44590.1 68416.m04792 60S acidic ribosomal protein P2 (RPP2D)... 29 0.42
At5g40040.1 68418.m04856 60S acidic ribosomal protein P2 (RPP2E)... 26 3.9
At3g28500.1 68416.m03560 60S acidic ribosomal protein P2 (RPP2C)... 25 5.2
At1g16530.1 68414.m01979 LOB domain protein 3 / lateral organ bo... 25 5.2
At1g73180.1 68414.m08469 eukaryotic translation initiation facto... 25 6.8
At5g66890.1 68418.m08432 disease resistance protein (CC-NBS-LRR ... 25 9.0
>At2g27710.3 68415.m03359 60S acidic ribosomal protein P2 (RPP2B)
Length = 115
Score = 32.7 bits (71), Expect = 0.034
Identities = 15/18 (83%), Positives = 16/18 (88%)
Frame = +3
Query: 63 MRYVAAYLLAVLGGKASP 116
M+ VAAYLLAVL GKASP
Sbjct: 1 MKVVAAYLLAVLSGKASP 18
>At2g27710.2 68415.m03358 60S acidic ribosomal protein P2 (RPP2B)
Length = 115
Score = 32.7 bits (71), Expect = 0.034
Identities = 15/18 (83%), Positives = 16/18 (88%)
Frame = +3
Query: 63 MRYVAAYLLAVLGGKASP 116
M+ VAAYLLAVL GKASP
Sbjct: 1 MKVVAAYLLAVLSGKASP 18
>At2g27710.1 68415.m03357 60S acidic ribosomal protein P2 (RPP2B)
Length = 115
Score = 32.7 bits (71), Expect = 0.034
Identities = 15/18 (83%), Positives = 16/18 (88%)
Frame = +3
Query: 63 MRYVAAYLLAVLGGKASP 116
M+ VAAYLLAVL GKASP
Sbjct: 1 MKVVAAYLLAVLSGKASP 18
>At2g27720.1 68415.m03360 60S acidic ribosomal protein P2 (RPP2A)
Length = 115
Score = 31.1 bits (67), Expect = 0.10
Identities = 14/18 (77%), Positives = 16/18 (88%)
Frame = +3
Query: 63 MRYVAAYLLAVLGGKASP 116
M+ VAA+LLAVL GKASP
Sbjct: 1 MKVVAAFLLAVLSGKASP 18
>At3g44590.2 68416.m04793 60S acidic ribosomal protein P2 (RPP2D)
acidic ribosomal protein P2, maize, PIR:S54179
Length = 111
Score = 29.1 bits (62), Expect = 0.42
Identities = 12/19 (63%), Positives = 16/19 (84%)
Frame = +3
Query: 63 MRYVAAYLLAVLGGKASPA 119
M+ AA+LLAVLGG A+P+
Sbjct: 1 MKVAAAFLLAVLGGNANPS 19
>At3g44590.1 68416.m04792 60S acidic ribosomal protein P2 (RPP2D)
acidic ribosomal protein P2, maize, PIR:S54179
Length = 111
Score = 29.1 bits (62), Expect = 0.42
Identities = 12/19 (63%), Positives = 16/19 (84%)
Frame = +3
Query: 63 MRYVAAYLLAVLGGKASPA 119
M+ AA+LLAVLGG A+P+
Sbjct: 1 MKVAAAFLLAVLGGNANPS 19
>At5g40040.1 68418.m04856 60S acidic ribosomal protein P2 (RPP2E)
acidic ribosomal protein P2, Parthenium
argentatum,SWISSPROT:RLA2_PARAR
Length = 114
Score = 25.8 bits (54), Expect = 3.9
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +3
Query: 63 MRYVAAYLLAVLGGKASPACC*CRK 137
M+ VAAYLLA L G +P+ +K
Sbjct: 1 MKVVAAYLLAKLSGNENPSVADLKK 25
>At3g28500.1 68416.m03560 60S acidic ribosomal protein P2 (RPP2C)
similar to acidic ribosomal protein P2b (rpp2b)
GB:U62753 GI:2431770 from [Zea mays]
Length = 115
Score = 25.4 bits (53), Expect = 5.2
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +3
Query: 63 MRYVAAYLLAVLGGKASP 116
M+ +AA+LLA LGG +P
Sbjct: 1 MKVIAAFLLAKLGGNENP 18
>At1g16530.1 68414.m01979 LOB domain protein 3 / lateral organ
boundaries domain protein 3 (LBD3) identical to
SP|Q9SA51 LOB domain protein 3 {Arabidopsis thaliana};
identical to ASYMMETRIC LEAVES2-like protein 9
[Arabidopsis thaliana] GI:19918989
Length = 165
Score = 25.4 bits (53), Expect = 5.2
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 58 KKCVTWPRIYSPCWAAKRPQRAADVEKILSS 150
+KCV +++P + AK P + A V KI +
Sbjct: 23 RKCVKDSCVFAPYFPAKEPYKFAIVHKIFGA 53
>At1g73180.1 68414.m08469 eukaryotic translation initiation
factor-related similar to eukaryotic translation
initiation factor 2A (GI:21956484) [Homo sapiens];
similar to Eukaryotic translation initiation factor 3
subunit 9 (eIF-3 eta) (eIF3 p116) (eIF3 p110) (eIF3b)
(Swiss-Prot:P55884) [Homo sapiens]
Length = 513
Score = 25.0 bits (52), Expect = 6.8
Identities = 8/25 (32%), Positives = 15/25 (60%)
Frame = +1
Query: 79 RIYSPCWAAKRPQRAADVEKILSSV 153
R+Y W + P+R D+ +++ SV
Sbjct: 403 RLYQAEWKPESPERFGDISELIKSV 427
>At5g66890.1 68418.m08432 disease resistance protein (CC-NBS-LRR
class), putative domain signature NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 415
Score = 24.6 bits (51), Expect = 9.0
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +2
Query: 35 HVSCLSDLKNALRGRVFTRRVGRQSVPSVLLMSKRSSALW 154
++SCLS L N R R + +P + L S +LW
Sbjct: 197 NLSCLSSLPNLKRIRFEKVSISLLDIPKLGLKSLEKLSLW 236
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,380,181
Number of Sequences: 28952
Number of extensions: 45188
Number of successful extensions: 84
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 12,070,560
effective HSP length: 32
effective length of database: 11,144,096
effective search space used: 211737824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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