Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_D13
(409 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 47 1e-06
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 44 1e-05
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 42 4e-05
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 42 4e-05
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 42 5e-05
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 42 5e-05
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 40 1e-04
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 38 5e-04
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 38 6e-04
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 38 8e-04
SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein Usp102|Schi... 36 0.002
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 36 0.003
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 35 0.004
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 35 0.006
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 35 0.006
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 35 0.006
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 33 0.017
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 33 0.023
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 33 0.023
SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomy... 32 0.039
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 32 0.039
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 31 0.052
SPBC1289.02c |uap2||U2 snRNP-associated protein Uap2|Schizosacch... 31 0.091
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 31 0.091
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ... 30 0.16
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 30 0.16
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 30 0.16
SPBC19F5.01c |puc1|SPBP8B7.32c|cyclin Puc1|Schizosaccharomyces p... 29 0.21
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 29 0.28
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 29 0.28
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 29 0.28
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 28 0.49
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 28 0.49
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 28 0.64
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 26 2.0
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 2.6
SPCC1223.08c |dfr1||dihydrofolate reductase Dfr1|Schizosaccharom... 26 2.6
SPAC13G7.04c |mac1||membrane anchored protein Mac1 |Schizosaccha... 26 2.6
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 25 3.4
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ... 25 6.0
SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity fac... 25 6.0
SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha... 24 7.9
SPAP8A3.06 |||U2AF small subunit, U2AF-23|Schizosaccharomyces po... 24 7.9
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ... 24 7.9
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 24 7.9
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 47.2 bits (107), Expect = 1e-06
Identities = 29/91 (31%), Positives = 51/91 (56%), Gaps = 6/91 (6%)
Frame = +1
Query: 154 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL----NPPGFAFIEFENLQEAEDACSAMN 321
+YV G +G++ +L EF+ +G L + + FAF+E+E+ ++AEDA ++
Sbjct: 9 LYVTGFRDGMRARELAYEFEPFGPLIRCDIPIPRTRTSRPFAFVEYEDSRDAEDAYYEVH 68
Query: 322 G--IEMLGATLKVEISRKRDGPRTGNFRGGR 408
G +E G L+VE +++ G+ RGGR
Sbjct: 69 GRRLERGGGVLRVEWAKQPPPSGPGSKRGGR 99
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 43.6 bits (98), Expect = 1e-05
Identities = 28/78 (35%), Positives = 39/78 (50%), Gaps = 10/78 (12%)
Frame = +1
Query: 154 VYVGGLVEGIKKEDLEREFDKYG----------KLNSVWVALNPPGFAFIEFENLQEAED 303
+YVG L + DL F+ +G K N + +P FAFI FEN A++
Sbjct: 22 IYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDSKSPTLFAFITFENKCSADN 81
Query: 304 ACSAMNGIEMLGATLKVE 357
A +++NG G TLKVE
Sbjct: 82 AIASLNGSSFQGNTLKVE 99
Score = 33.9 bits (74), Expect = 0.010
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Frame = +1
Query: 190 EDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACSAMNGIEMLGATLKV 354
+ LE F K+G++ S +A P G+ F+ F + EA A + +NG+ L V
Sbjct: 435 QQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAINTLNGVLFGKKRLFV 494
Query: 355 EISRKRD 375
+ KR+
Sbjct: 495 NYAEKRE 501
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 41.9 bits (94), Expect = 4e-05
Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 5/88 (5%)
Frame = +1
Query: 127 TIMSSGGTRVYVGGLVEGIKK-EDLEREFDKYGKLNSVWVALNPPG----FAFIEFENLQ 291
TI R+ + L IKK + LE F K+GK+ + + G FAF+ ++ +
Sbjct: 100 TIRQDNRPRLIIRNLPWSIKKPQHLEPHFSKFGKVREIKIPTKGGGRMCGFAFVWMKDRK 159
Query: 292 EAEDACSAMNGIEMLGATLKVEISRKRD 375
AE+A +++NG E+ G + V+ + +D
Sbjct: 160 AAEEAMNSLNGTEIDGRPIAVDWAVSKD 187
Score = 35.1 bits (77), Expect = 0.004
Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Frame = +1
Query: 133 MSSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEA 297
M+S T ++V L K++DL F G + V NP G+ F+ F L++A
Sbjct: 1 MNSNST-LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDA 59
Query: 298 EDACSAMNGIEMLGATLKVEISRKR 372
+ A + ++ G L+++ + R
Sbjct: 60 QRAAKELKNKKLHGRILRLDFATPR 84
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 41.9 bits (94), Expect = 4e-05
Identities = 27/84 (32%), Positives = 46/84 (54%)
Frame = +1
Query: 148 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGI 327
TR++VG + +ED+ F YG++ + +N GF F+E E+ ++A D + G
Sbjct: 4 TRLFVGRIPPQATREDMMDFFKGYGQILDCKL-MN--GFGFVEVEDARDARDIVNDFQGK 60
Query: 328 EMLGATLKVEISRKRDGPRTGNFR 399
E +G+ + VE +R + R NFR
Sbjct: 61 EFMGSRIVVEPAR-GERRRRENFR 83
Score = 29.5 bits (63), Expect = 0.21
Identities = 16/60 (26%), Positives = 28/60 (46%)
Frame = +1
Query: 145 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNG 324
G R+ V L E + +DL+ K G+ PG +EF ++ +A +++NG
Sbjct: 97 GFRLIVENLSEDVSWQDLKDVMRKAGEPTFTDAHRENPGAGVVEFSTEEDMRNALTSLNG 156
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 41.5 bits (93), Expect = 5e-05
Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 5/97 (5%)
Frame = +1
Query: 133 MSSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEA 297
+S V+VG L ++DL F G + S+ + +P GF ++ F ++ A
Sbjct: 361 LSEPSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSA 420
Query: 298 EDACSAMNGIEMLGATLKVEISRKRDGPRTGNFRGGR 408
+ C MNG + G +++ S R G G RGGR
Sbjct: 421 K-KCVEMNGHFIAGRPCRLDFSTPRTG---GGSRGGR 453
Score = 33.5 bits (73), Expect = 0.013
Identities = 20/78 (25%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
Frame = +1
Query: 154 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAM 318
V+VG L + + L +EF++YG + V ++ G+ +++FE + A+ A +A
Sbjct: 265 VFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAAN 324
Query: 319 NGIEMLGATLKVEISRKR 372
E+ G + +++S R
Sbjct: 325 GTKEIDGRMVNLDLSNPR 342
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 41.5 bits (93), Expect = 5e-05
Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
Frame = +1
Query: 154 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAM 318
+++ L K+ D+EREF +YG + + V N G+AF+ FE ++ + A A
Sbjct: 102 MFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFERERDLKVAYKAS 161
Query: 319 NGIEMLGATLKVEISRKR 372
G+ + G + V++ R R
Sbjct: 162 AGLMLNGRRIVVDVERGR 179
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 39.9 bits (89), Expect = 1e-04
Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 7/79 (8%)
Frame = +1
Query: 151 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWV--ALNPPG----FAFIEFENLQEAEDAC- 309
R+YVGGL I+ DLE F ++G ++++ + P G FA++ F ++ C
Sbjct: 6 RIYVGGLSSSIESSDLESRFSRFGSVSNLEIINKSTPVGTIQRFAYLNFRTDEDKWQKCK 65
Query: 310 SAMNGIEMLGATLKVEISR 366
S ++ G+ L++E +R
Sbjct: 66 SYLSNATFKGSKLRIEEAR 84
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 38.3 bits (85), Expect = 5e-04
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Frame = +1
Query: 145 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL----NPPGFAFIEFENLQEAEDACS 312
GT++ + L K+D++ YG+L SV V + GFAF EF +EA +A
Sbjct: 720 GTKILIKNLPFEATKKDVQSLLGAYGQLRSVRVPKKFDRSARGFAFAEFVTAREAANAMR 779
Query: 313 AMNGIEMLGATLKVE 357
A+ +LG L ++
Sbjct: 780 ALKNTHLLGRHLVLQ 794
Score = 33.9 bits (74), Expect = 0.010
Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Frame = +1
Query: 151 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL-----NPPGFAFIEFENLQEAEDACSA 315
R+++ L ++DL+ F +G+L V + + NP GFA+I+F + +A A
Sbjct: 324 RLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAYLE 383
Query: 316 MNGIEMLGATLKVEISRKR 372
++ G L V ++ R
Sbjct: 384 LDAKPFQGRLLHVLPAKAR 402
Score = 33.1 bits (72), Expect = 0.017
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 10/82 (12%)
Frame = +1
Query: 154 VYVGGLVEGIKKEDLEREFDKY-GKLNSVWVALNPP---------GFAFIEFENLQEAED 303
+YV L K+E+ ++ F G L++V A P GF F+EF++ A
Sbjct: 621 IYVKNLNFSTKQEEFQKVFKPLEGYLSAVIRAKPDPKRPGKYLSMGFGFVEFKDKASAVA 680
Query: 304 ACSAMNGIEMLGATLKVEISRK 369
A AMNG + G L++++S +
Sbjct: 681 AMHAMNGFVLDGHKLEIKLSHQ 702
Score = 24.2 bits (50), Expect = 7.9
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +1
Query: 262 FAFIEFENLQEAEDACSAMNGIEMLGATLKVEISRKRD 375
FAFI F+N ++A+ A +N + T ++E+ R D
Sbjct: 48 FAFIGFKNEEDADKAIRYLN--KSYVETSRIEVHRALD 83
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 37.9 bits (84), Expect = 6e-04
Identities = 17/59 (28%), Positives = 32/59 (54%)
Frame = +1
Query: 148 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNG 324
T V+VGGL + ++DL+ F +G++ ++ + G F+++ AE A + M G
Sbjct: 297 TTVFVGGLASNLSEKDLQVCFQPFGRILNIKIPFG-KGCGFVQYSEKSAAEKAINTMQG 354
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 37.5 bits (83), Expect = 8e-04
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Frame = +1
Query: 187 KEDLEREFD-KYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGIEMLGATLKVEIS 363
++D++ E D KYGK+ + V N G F++FEN AE A + ++ G T+K I
Sbjct: 530 EQDVKEECDEKYGKVVHIAVVPNELGQIFVKFENADFAEKAITGLHQRWFGGRTIKASIL 589
Query: 364 RKRD 375
+ D
Sbjct: 590 PETD 593
Score = 33.9 bits (74), Expect = 0.010
Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Frame = +1
Query: 151 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP----GFAFIEFENLQEAEDACSAM 318
R+ V + + ED++ F+ +G + V + + GF +I++ N A +A M
Sbjct: 341 RLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQNRSKGFGYIQYRNPISARNALEKM 400
Query: 319 NGIEMLGATLKV 354
NG ++ G ++V
Sbjct: 401 NGFDLAGRNMRV 412
>SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein
Usp102|Schizosaccharomyces pombe|chr 2|||Manual
Length = 249
Score = 36.3 bits (80), Expect = 0.002
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
Frame = +1
Query: 154 VYVGGLVEGIK----KEDLEREFDKYGKLNSVWV--ALNPPGFAFIEFENLQEAEDACSA 315
+Y+ + E I+ K LE F YGK+ V L G AF+ F+NL+ A A
Sbjct: 28 LYIRNIEEKIRLTMLKRILEHLFGSYGKVIDVQARKTLRMRGQAFVVFDNLENASRALKD 87
Query: 316 MNGIEMLGATLKVEISRKR 372
+ G + G + ++ S+ +
Sbjct: 88 LQGYPLYGKPMMIQYSKSK 106
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 35.5 bits (78), Expect = 0.003
Identities = 14/54 (25%), Positives = 31/54 (57%)
Frame = +1
Query: 136 SSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEA 297
++ V++G L ++++E F K+GK+ + + L+ AF+ F N+++A
Sbjct: 295 TAASRNVFIGNLPSSYHEKEIEEAFGKFGKIEHIKI-LSKKNIAFVHFLNIRDA 347
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 35.1 bits (77), Expect = 0.004
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Frame = +1
Query: 145 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL---NPPGFAFIEFENLQEAEDACSA 315
G +YV + + ++D+E F YG++ SV + GF ++ Q+AE+A SA
Sbjct: 756 GRELYVTNIDFKVNEKDVETFFRDYGQVESVRIPKRFNQHKGFGYVVMTTNQDAENALSA 815
Query: 316 MNGIEMLGATLKVEISRKRD 375
G ++ L V +S+ R+
Sbjct: 816 A-GKQLGNRVLNVVLSKPRE 834
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 34.7 bits (76), Expect = 0.006
Identities = 28/89 (31%), Positives = 39/89 (43%), Gaps = 6/89 (6%)
Frame = +1
Query: 154 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAM 318
VYVG + + E+L+ F G +N V + + P GFA+IEF +A +
Sbjct: 57 VYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNAL-LL 115
Query: 319 NGIEMLGATLKVEISRKR-DGPRTGNFRG 402
NG + LKV R G G RG
Sbjct: 116 NGSMLHERPLKVTPKRTNVPGMSRGRGRG 144
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 34.7 bits (76), Expect = 0.006
Identities = 19/78 (24%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Frame = +1
Query: 127 TIMSSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVA--LNPPGFAFIEFENLQEAE 300
T+ + +++ L I E++ F +YG + + + + G AF+ +EN+Q+A
Sbjct: 5 TVNQEVNSILFIKNLSFKITAEEMYDLFGRYGPVRQIRLGNTVQTRGTAFVVYENVQDAR 64
Query: 301 DACSAMNGIEMLGATLKV 354
AC ++G + L V
Sbjct: 65 RACEKLSGYNFMDRYLVV 82
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 34.7 bits (76), Expect = 0.006
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 9/67 (13%)
Frame = +1
Query: 151 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVA---------LNPPGFAFIEFENLQEAED 303
RV+VG L KK ++ F+ G + V + L P G AF+ F N ++ +
Sbjct: 45 RVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVPSGIAFVTFNNQEDVDK 104
Query: 304 ACSAMNG 324
A +NG
Sbjct: 105 AIETLNG 111
Score = 28.3 bits (60), Expect = 0.49
Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 17/85 (20%)
Frame = +1
Query: 154 VYVGGLVEGIKKEDLEREFDKYGKLNS-VWVALNPP----------------GFAFIEFE 282
+YV GL + E L+ FD Y + + V PP GF F+ F
Sbjct: 207 IYVSGLSVTLTNEGLKEMFDAYNPTRARIAVRSLPPYIIRRIKLRGEQRRGRGFGFVSFA 266
Query: 283 NLQEAEDACSAMNGIEMLGATLKVE 357
N ++ A MNG ++ TL V+
Sbjct: 267 NAEDQSRAIEEMNGKQVGDLTLVVK 291
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 33.1 bits (72), Expect = 0.017
Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Frame = +1
Query: 112 VNTNHTIMSSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIE 276
V+ N + G +YVG L G ++ + F ++G + + ++ N +AFIE
Sbjct: 94 VSENKNLQKKKGV-LYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFIE 152
Query: 277 FENLQEAEDACSAMNGIEMLGATLKVEI 360
FE+L A M+ + G L+ ++
Sbjct: 153 FESLDVANVVAETMHNYLLYGKLLQCKV 180
>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 661
Score = 32.7 bits (71), Expect = 0.023
Identities = 16/56 (28%), Positives = 27/56 (48%)
Frame = +1
Query: 154 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMN 321
+YV L G + F YG + +W+ L+P A + +E+L A A A++
Sbjct: 2 LYVSNLPVGTSSSAIHALFSAYGNVKDIWM-LSPDNSAIVSYESLSSAIVARDALH 56
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 32.7 bits (71), Expect = 0.023
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +1
Query: 259 GFAFIEFENLQEAEDACSAMNGIEMLGATLKVEISRKRDGPRT 387
GF F EF + Q+ E AC +N +++ G ++V + + G T
Sbjct: 53 GFGFCEFLHEQDVEYACQILNQVKLFGKPIRVNRASQDRGVNT 95
Score = 31.1 bits (67), Expect = 0.069
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Frame = +1
Query: 145 GTRVYVGGLVEGIKKEDLEREFDKYGKL-NSVWVALNP----PGFAFIEFENLQEAEDAC 309
G ++VG L + + L F G+L + VA + G+ F+ +++ + A+ A
Sbjct: 98 GANLFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAI 157
Query: 310 SAMNGIEMLGATLKVEISRKRDG 378
AMN ++ + V + KR+G
Sbjct: 158 EAMNNQFLMNKPITVSYAFKREG 180
>SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 31.9 bits (69), Expect = 0.039
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = +1
Query: 181 IKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNG 324
+ +E L F YGKL SV +N P A + F +L+ A A + M+G
Sbjct: 174 LSQERLYSIFRTYGKLRSV--TINSPTSATLSFSSLRSATSALNCMHG 219
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 31.9 bits (69), Expect = 0.039
Identities = 15/57 (26%), Positives = 31/57 (54%)
Frame = +1
Query: 154 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNG 324
++VG L G+ + F YG ++S+ + L+ AF+ F++++ A+ +NG
Sbjct: 589 LWVGNLPSGVSATTVATTFSAYGTVSSIRM-LSHKHSAFLNFDSVETAKHVLEELNG 644
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 31.5 bits (68), Expect = 0.052
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Frame = +1
Query: 190 EDLEREFDKYGKLNSVWVALNPPG-----FAFIEFENLQEAEDACSAMNGIEMLGATLKV 354
EDLE F ++GK+ S V + +AFIEF+N + E A M + + + + V
Sbjct: 258 EDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKAYFKMQNVLIDDSRIHV 317
Query: 355 EISR 366
+ S+
Sbjct: 318 DFSQ 321
>SPBC1289.02c |uap2||U2 snRNP-associated protein
Uap2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 30.7 bits (66), Expect = 0.091
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = +1
Query: 187 KEDLEREFDKYGKL-NSVWVALNPPGFAFIEFENLQEAEDACSAMNGIEMLGATLKVEI 360
K+D+ E +K G++ N V P G + F N +EAE M G G ++ I
Sbjct: 273 KDDITEEAEKCGRVTNVVLYDKEPDGVVTVRFSNNEEAEACVRLMQGRYFDGRVVEASI 331
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 30.7 bits (66), Expect = 0.091
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
Frame = +1
Query: 151 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSA 315
++Y+ L + ++ + +G L S + N GF F EF+N +AE A S
Sbjct: 311 KIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPSDAEVAISG 370
Query: 316 MNGIEMLGATLKVEIS 363
++G + G L + +
Sbjct: 371 LDGKDTYGNKLHAQFA 386
>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 29.9 bits (64), Expect = 0.16
Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Frame = +1
Query: 115 NTNHTIMSSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG-FAFIEFENLQ 291
NTN + +YVG L +E+L+ F + G F+EFEN+
Sbjct: 415 NTNPADQNPPCNTIYVGNLPPSTSEEELKVLFSTQVGYKRLCFRTKGNGPMCFVEFENIP 474
Query: 292 EAEDACSAMNGIEMLGATLK 351
A +A + G+ L +++K
Sbjct: 475 YAMEALKNLQGV-CLSSSIK 493
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 29.9 bits (64), Expect = 0.16
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 4/71 (5%)
Frame = +1
Query: 154 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG----FAFIEFENLQEAEDACSAMN 321
+YVG L +L F G + +A P G F ++FEN +A + +N
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPTGRSKGFGVVQFENENDAASSIEKLN 341
Query: 322 GIEMLGATLKV 354
G G L++
Sbjct: 342 GYRYGGRPLQL 352
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 29.9 bits (64), Expect = 0.16
Identities = 17/74 (22%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Frame = +1
Query: 151 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSA 315
+++VGG+ +E+ F+++G++ + ++ P GF F+ +EN + A +A +
Sbjct: 248 KMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYEN-ESAVEATMS 306
Query: 316 MNGIEMLGATLKVE 357
I + G ++V+
Sbjct: 307 QPYITIHGKPVEVK 320
>SPBC19F5.01c |puc1|SPBP8B7.32c|cyclin Puc1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 359
Score = 29.5 bits (63), Expect = 0.21
Identities = 22/76 (28%), Positives = 30/76 (39%)
Frame = -3
Query: 404 PPLKLPVRGPSRFLEISTLRVAPNISMPFMALHASSASCKFSNSMNAKPGGFNATHTEFN 225
P +PV P FL + PN+ AS +C N +N G F TH
Sbjct: 231 PASYIPVLDPIFFLVLDASMFVPNL----FKFPASKIACSVMNIVNEHVGSFLLTH---- 282
Query: 224 FPYLSNSRSRSSFLIP 177
P + + R +FL P
Sbjct: 283 -PSMESYRKDDNFLWP 297
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 29.1 bits (62), Expect = 0.28
Identities = 17/78 (21%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Frame = +1
Query: 139 SGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAED 303
+ G V+VG + + ++ + F++ G + + + L+P G+ F EF + +
Sbjct: 4 TAGNVVFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAM 63
Query: 304 ACSAMNGIEMLGATLKVE 357
A +N E+ ++VE
Sbjct: 64 AVRKLNNSELGPRKIRVE 81
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 29.1 bits (62), Expect = 0.28
Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 8/88 (9%)
Frame = +1
Query: 154 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACSAM 318
+YVG L + + L F+ G + S+ V + G+A++ F N+++ E A +
Sbjct: 82 LYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDEL 141
Query: 319 NGIEMLGATLKVEISRKRDGPR---TGN 393
N + G ++ S++ R TGN
Sbjct: 142 NYTLIKGRPCRIMWSQRDPSLRKMGTGN 169
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 29.1 bits (62), Expect = 0.28
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Frame = +1
Query: 154 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG----FAFIEFENLQEAEDACSAMN 321
V+VG L + + L F +G++ SV + +AF+EF+ ++A++A MN
Sbjct: 8 VHVGNLAPSVTESLLYNAFIPFGEIISVALHRKEKAVDRSYAFVEFDEPEDAKEAMENMN 67
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 28.3 bits (60), Expect = 0.49
Identities = 9/29 (31%), Positives = 19/29 (65%)
Frame = +1
Query: 154 VYVGGLVEGIKKEDLEREFDKYGKLNSVW 240
+YVG + + E++ + F KYG++ S++
Sbjct: 19 IYVGNIDSRLSDEEIIKHFSKYGQVESIF 47
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 28.3 bits (60), Expect = 0.49
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Frame = +1
Query: 154 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDA 306
VYVG L +E + F K G++ + + ++ P GF F+E+ Q+A D+
Sbjct: 34 VYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVEYFENQDALDS 89
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 27.9 bits (59), Expect = 0.64
Identities = 18/70 (25%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Frame = -3
Query: 329 SMPFMALHASSASCK---FSNSMNAKPGGFNATHTEFNFPYLSNSRSRSSFLIPSTSPPT 159
S P A +SS+S +S++ ++ ++ ++ P SNS + S+ +I S + +
Sbjct: 773 SEPQTAFTSSSSSATPTITQSSISTSVSSQSSMNSSYSSPISSNSVTSSTSIISSIASSS 832
Query: 158 YTRVPPLLMI 129
YT +P + I
Sbjct: 833 YTSIPSISSI 842
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 26.2 bits (55), Expect = 2.0
Identities = 19/78 (24%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
Frame = +1
Query: 145 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDAC 309
G + V G+ +E +E F +G + ++ + L+ G+A IE+ L++A+ A
Sbjct: 9 GYIIIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEYATLEQAQKAV 68
Query: 310 SAMNGIEMLGATLKVEIS 363
N + +L L+V+ +
Sbjct: 69 DEKN-LSLLDEKLEVDFA 85
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.8 bits (54), Expect = 2.6
Identities = 19/57 (33%), Positives = 29/57 (50%)
Frame = -3
Query: 338 PNISMPFMALHASSASCKFSNSMNAKPGGFNATHTEFNFPYLSNSRSRSSFLIPSTS 168
P S F +L +S++S + S S + +A T + YLS+S SS PS+S
Sbjct: 169 PLTSSTFSSLSSSTSSSQPSVSSTSSSTFSSAAPTSTSSSYLSSSSVVSSSSSPSSS 225
>SPCC1223.08c |dfr1||dihydrofolate reductase
Dfr1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 461
Score = 25.8 bits (54), Expect = 2.6
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +1
Query: 187 KEDLEREFDKYGKLNSVWVAL 249
KE++E EF+ YGK + V VAL
Sbjct: 435 KEEVEIEFELYGKNDDVNVAL 455
>SPAC13G7.04c |mac1||membrane anchored protein Mac1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 756
Score = 25.8 bits (54), Expect = 2.6
Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = -3
Query: 338 PNISMPFMALHASSASCKFSNSMN-AKPG 255
P + PF A+HA+++S + N+ N PG
Sbjct: 384 PKTARPFAAIHANASSTQLRNTENITHPG 412
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 25.4 bits (53), Expect = 3.4
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = -3
Query: 242 THTEFNFPYLSNSRSRSSFLIPSTSPPTYTRVPP 141
T FPYL NSR+R S + P+ VPP
Sbjct: 329 TEYRIAFPYLYNSRAR-SVALSEYHQPSNVFVPP 361
>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1147
Score = 24.6 bits (51), Expect = 6.0
Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Frame = -3
Query: 284 FSNSM-NAKPGGFNATHTEFNFPYLSNSRSRSS 189
FSNS N P FN T P + S+ RS+
Sbjct: 398 FSNSTGNTNPSAFNGLLTSSRIPSYNGSKVRST 430
>SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity factor
complex subunit, Fip1 homolog |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 344
Score = 24.6 bits (51), Expect = 6.0
Identities = 15/50 (30%), Positives = 21/50 (42%)
Frame = -3
Query: 341 APNISMPFMALHASSASCKFSNSMNAKPGGFNATHTEFNFPYLSNSRSRS 192
+PNI+ HA S+ N +NA+ N P+ SN S S
Sbjct: 269 SPNITSSAGMTHAQPTHNPTSSYGNGASTNYNASRPPSNHPHSSNYPSSS 318
>SPBC609.03 |||WD repeat protein, human IQWD1
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 24.2 bits (50), Expect = 7.9
Identities = 9/40 (22%), Positives = 20/40 (50%)
Frame = -3
Query: 323 PFMALHASSASCKFSNSMNAKPGGFNATHTEFNFPYLSNS 204
P +A+ ++ K N+ N P G + HT ++ ++ +
Sbjct: 726 PTLAVSGIDSTVKIFNTENTPPSGCSRNHTSNSYKIIATN 765
>SPAP8A3.06 |||U2AF small subunit, U2AF-23|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 216
Score = 24.2 bits (50), Expect = 7.9
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Frame = +1
Query: 190 EDLEREFDKYGKLNSVWVALNP----PGFAFIEFENLQEAEDACSAMN 321
ED+ EF KYG++ + V N G ++ F+ + A++A +N
Sbjct: 78 EDMFCEFSKYGEVEQLVVCDNVGDHLVGNVYVRFKYEESAQNAIDDLN 125
>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 199
Score = 24.2 bits (50), Expect = 7.9
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +1
Query: 157 YVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP 255
Y G LV+G +K +E D +LNS+ ++P
Sbjct: 116 YEGRLVDGTRKMKVEIILDPSRQLNSLAARVSP 148
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 24.2 bits (50), Expect = 7.9
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 6/74 (8%)
Frame = +1
Query: 115 NTNHTIMSSGGTR-VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIE 276
N + S+ TR VY+ GL E+L +++GK++S ++ G+ F
Sbjct: 284 NKKSNMESTSRTRNVYIRGLPPNTSDENLLLYTNRFGKVSSSKAIIDMETNLCKGYGFAC 343
Query: 277 FENLQEAEDACSAM 318
FE + A SAM
Sbjct: 344 FEEEKSALICISAM 357
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,497,522
Number of Sequences: 5004
Number of extensions: 29424
Number of successful extensions: 155
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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