Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_D13
(409 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_59562| Best HMM Match : RRM_1 (HMM E-Value=6.1e-23) 86 1e-17
SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.) 78 2e-15
SB_11682| Best HMM Match : No HMM Matches (HMM E-Value=.) 78 2e-15
SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39) 62 2e-10
SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35) 57 5e-09
SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.) 49 2e-06
SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 2e-06
SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 3e-06
SB_11106| Best HMM Match : RRM_1 (HMM E-Value=1.8e-11) 48 3e-06
SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 3e-06
SB_28089| Best HMM Match : No HMM Matches (HMM E-Value=.) 47 5e-06
SB_51896| Best HMM Match : No HMM Matches (HMM E-Value=.) 47 5e-06
SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 1e-05
SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35) 46 2e-05
SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0) 46 2e-05
SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0) 46 2e-05
SB_43406| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 2e-05
SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0) 45 3e-05
SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0) 45 3e-05
SB_37198| Best HMM Match : RRM_1 (HMM E-Value=7.8e-23) 43 8e-05
SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36) 41 3e-04
SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42) 40 6e-04
SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.001
SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15) 39 0.002
SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20) 38 0.002
SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.003
SB_37668| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.004
SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.004
SB_17244| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.006
SB_53070| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.007
SB_47990| Best HMM Match : RRM_1 (HMM E-Value=7.8e-28) 37 0.007
SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.007
SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23) 37 0.007
SB_28396| Best HMM Match : RRM_1 (HMM E-Value=0.00035) 36 0.010
SB_29577| Best HMM Match : RRM_1 (HMM E-Value=8.5e-15) 36 0.017
SB_34115| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 35 0.022
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33) 35 0.029
SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.029
SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.029
SB_46575| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.068
SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.12
SB_20581| Best HMM Match : RRM_1 (HMM E-Value=1.7e-07) 32 0.21
SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0) 31 0.27
SB_16080| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.27
SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28) 31 0.27
SB_21838| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.48
SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.48
SB_57434| Best HMM Match : LRR_1 (HMM E-Value=3.9e-13) 30 0.84
SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.84
SB_6474| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.84
SB_44482| Best HMM Match : RRM_1 (HMM E-Value=0.19) 29 1.1
SB_37749| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.1
SB_16504| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.1
SB_6593| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.1
SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38) 29 1.9
SB_27005| Best HMM Match : NTF2 (HMM E-Value=1.1e-33) 29 1.9
SB_877| Best HMM Match : RRM_1 (HMM E-Value=1e-15) 29 1.9
SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16) 29 1.9
SB_12089| Best HMM Match : RRM_1 (HMM E-Value=7.4e-13) 28 2.6
SB_13046| Best HMM Match : La (HMM E-Value=5e-23) 28 2.6
SB_54569| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0018) 27 4.5
SB_47530| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.5
SB_17727| Best HMM Match : Exo_endo_phos (HMM E-Value=2.4e-12) 27 4.5
SB_23474| Best HMM Match : Exo_endo_phos (HMM E-Value=2.4e-12) 27 4.5
SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0) 27 4.5
SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.9
SB_22891| Best HMM Match : Ank (HMM E-Value=0) 27 5.9
SB_41885| Best HMM Match : SPC12 (HMM E-Value=3.4) 27 7.8
SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0) 27 7.8
SB_36891| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.8
>SB_59562| Best HMM Match : RRM_1 (HMM E-Value=6.1e-23)
Length = 201
Score = 85.8 bits (203), Expect = 1e-17
Identities = 37/84 (44%), Positives = 55/84 (65%)
Frame = +1
Query: 148 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGI 327
T++YVG L +LER F+K+G+L+ VWVA NPPGFAF+E+E+ ++AE+A ++G
Sbjct: 4 TKLYVGNLGRNADSSELERAFEKFGRLSKVWVARNPPGFAFVEYEDYRDAEEAVRELDGA 63
Query: 328 EMLGATLKVEISRKRDGPRTGNFR 399
+ T++VE S R G G R
Sbjct: 64 NVCDRTIRVEFSNNRGGRDRGGGR 87
>SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 78.2 bits (184), Expect = 2e-15
Identities = 36/84 (42%), Positives = 54/84 (64%)
Frame = +1
Query: 148 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGI 327
+RVY+G + + K ++EREF+ +G L VWVA NPPGFAF FE+ ++AEDA ++G
Sbjct: 2 SRVYIGNIGDNASKREIEREFETFGPLRDVWVARNPPGFAFCVFEDRRDAEDAVRELDGR 61
Query: 328 EMLGATLKVEISRKRDGPRTGNFR 399
+ G +VE+++ GP G R
Sbjct: 62 YICGQRARVELAK---GPSRGRPR 82
>SB_11682| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 184
Score = 78.2 bits (184), Expect = 2e-15
Identities = 36/84 (42%), Positives = 54/84 (64%), Gaps = 2/84 (2%)
Frame = +1
Query: 148 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGI 327
T+VY+G L + K ++E EF YG L VWVA NPPGFAF F++ ++AEDA ++G
Sbjct: 32 TKVYIGSLGDNASKREIENEFGYYGPLKDVWVARNPPGFAFCIFDDRRDAEDAVRELDGR 91
Query: 328 EMLGATLKVEISR--KRDGPRTGN 393
+ G ++VE+++ R PR G+
Sbjct: 92 YICGQRVRVELAKGPSRGRPRMGS 115
>SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39)
Length = 507
Score = 62.1 bits (144), Expect = 2e-10
Identities = 38/103 (36%), Positives = 56/103 (54%), Gaps = 4/103 (3%)
Frame = +1
Query: 109 LVNTNHTIMSSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWV----ALNPPGFAFIE 276
L+++N +S RVYVG L + ++++DL F KYG + V + PP FAF+E
Sbjct: 248 LMSSNMNRSNSNDCRVYVGNLPQDVREKDLHDIFYKYGHIADVDLKNRRGAGPP-FAFVE 306
Query: 277 FENLQEAEDACSAMNGIEMLGATLKVEISRKRDGPRTGNFRGG 405
FE+ ++AEDA +G E G ++VE R G G GG
Sbjct: 307 FEDPRDAEDAVKGRDGHEFDGYRIRVEFPRGGSGRGGGGGGGG 349
>SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35)
Length = 1118
Score = 57.2 bits (132), Expect = 5e-09
Identities = 34/86 (39%), Positives = 50/86 (58%)
Frame = +1
Query: 151 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGIE 330
RVY+G L G ++D+ R F YG+L + + N + F+EFE+ ++A+DA NG E
Sbjct: 4 RVYLGRLPYGTTEDDVRRFFRSYGRLRDINLKNN---YGFVEFEDDRDADDAVYECNGKE 60
Query: 331 MLGATLKVEISRKRDGPRTGNFRGGR 408
MLG + VE S R G R+ + R R
Sbjct: 61 MLGERILVEHS--RGGARSSSSRPSR 84
>SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 721
Score = 48.8 bits (111), Expect = 2e-06
Identities = 24/76 (31%), Positives = 44/76 (57%), Gaps = 5/76 (6%)
Frame = +1
Query: 145 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDAC 309
G ++V + E +++D+ F YG++ ++ V L+ G+A +E+E +EA+ A
Sbjct: 292 GWILFVTNIHEEAQEDDIHELFSDYGEIKNLHVNLDRRTGFIKGYALVEYETFKEAQSAL 351
Query: 310 SAMNGIEMLGATLKVE 357
A+NG EMLG + V+
Sbjct: 352 EALNGAEMLGQNISVD 367
>SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 364
Score = 48.4 bits (110), Expect = 2e-06
Identities = 28/92 (30%), Positives = 49/92 (53%), Gaps = 7/92 (7%)
Frame = +1
Query: 151 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVA----LNPPGFAFIEFENLQEAEDACSAM 318
+ Y+G L + + DL+ F +Y ++ ++ P GFAF+ F + + EDA + +
Sbjct: 231 KCYIGNLDFKVNEADLQDRFSRYDVVDVQVISDRETQRPRGFAFVTFGSKKNMEDAINEL 290
Query: 319 NGIEMLGATLKVEISRKRD---GPRTGNFRGG 405
+G E G ++KV +R R+ G R G +R G
Sbjct: 291 DGQEFDGRSMKVNQARSREQRGGGRGGGYRSG 322
>SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 783
Score = 48.0 bits (109), Expect = 3e-06
Identities = 29/89 (32%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Frame = +1
Query: 148 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGI 327
TR++VGGL I +LEREFD++G + + A+I +++L A A M G
Sbjct: 318 TRLWVGGLGPWISIPELEREFDRFGAIRRIDYR-KGGDHAYILYDSLDAASVAAREMRGF 376
Query: 328 EMLGATLKVEISRKRDGPR--TGNFRGGR 408
+M L+++ + K G + +F GGR
Sbjct: 377 QMGDRRLRIDFADKEQGMKDYDPSFYGGR 405
Score = 35.1 bits (77), Expect = 0.022
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Frame = +1
Query: 154 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG----FAFIEFENLQEAEDACSAMN 321
++VG L GI +DL F+K+G + V + G +AF++F +L A A AM
Sbjct: 239 LFVGNLETGISCQDLRLSFEKFGVVLDVDIKRPARGQGNTYAFVKFADLDVAAKAKCAMQ 298
Query: 322 GIEMLGAT-LKVEISRKRDGPR 384
G + +G +K+ R + R
Sbjct: 299 G-QCIGRNHIKIGYGRSQQTTR 319
>SB_11106| Best HMM Match : RRM_1 (HMM E-Value=1.8e-11)
Length = 67
Score = 48.0 bits (109), Expect = 3e-06
Identities = 24/63 (38%), Positives = 38/63 (60%)
Frame = +1
Query: 151 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGIE 330
RVY+G L G +++D+++ F YG+ + L G+ F+EF+ +AEDA NG +
Sbjct: 4 RVYLGRLPYGTREDDVKKFFYTYGRFKIREIILKD-GYGFVEFDYSDDAEDAVYECNGKK 62
Query: 331 MLG 339
MLG
Sbjct: 63 MLG 65
>SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 215
Score = 48.0 bits (109), Expect = 3e-06
Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 5/76 (6%)
Frame = +1
Query: 154 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACSAM 318
VYVG L + DL + F++YGK+ V + + G AFI F + Q A++A +A+
Sbjct: 12 VYVGNLPYSLTNSDLHKVFERYGKVVKVTILRDKETRESRGVAFILFIDRQSAQNAVAAV 71
Query: 319 NGIEMLGATLKVEISR 366
N +M G T+K I++
Sbjct: 72 NKKQMFGRTIKCTIAK 87
>SB_28089| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 254
Score = 47.2 bits (107), Expect = 5e-06
Identities = 23/67 (34%), Positives = 39/67 (58%)
Frame = +1
Query: 139 SGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAM 318
S TRVY G L ++ DLE+ YG++ + + L G+ F+EF++ ++A+D +
Sbjct: 2 SRSTRVYFGRLPRDCRERDLEKFVRGYGRVREISMKL---GYGFVEFDDYRDADDCVYDL 58
Query: 319 NGIEMLG 339
NG +LG
Sbjct: 59 NGRNLLG 65
>SB_51896| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 179
Score = 47.2 bits (107), Expect = 5e-06
Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 2/91 (2%)
Frame = +1
Query: 133 MSSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACS 312
M+S GT+++VG L + K DLE F YGKL + + FIE+E+ ++AE+A
Sbjct: 1 MASRGTQLFVGRLSKETKLRDLENVFYLYGKLLRCDL---KTAYGFIEYEDPRDAEEAMR 57
Query: 313 AMNGIEMLGATLKVEISR--KRDGPRTGNFR 399
N ++ G+ + VE R +R P G R
Sbjct: 58 RENNRKLFGSRIVVEYVRSGERGKPVGGQTR 88
>SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 371
Score = 46.0 bits (104), Expect = 1e-05
Identities = 24/51 (47%), Positives = 33/51 (64%), Gaps = 2/51 (3%)
Frame = +1
Query: 259 GFAFIEFENLQEAEDACSAMNGIEMLGATLKV--EISRKRDGPRTGNFRGG 405
GF F+ F N ++A+ A ++NG E+ G TLK+ ISR RDG G +RGG
Sbjct: 100 GFGFVTFANPEDAQTAVKSLNGKEVQGRTLKIAPSISRGRDG-GGGGYRGG 149
>SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35)
Length = 929
Score = 45.6 bits (103), Expect = 2e-05
Identities = 23/77 (29%), Positives = 43/77 (55%)
Frame = +1
Query: 169 LVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGIEMLGATL 348
L +++ D+E+ YGK+ + + G+ F+EF++ ++AEDA +NG +++G +
Sbjct: 696 LPRDVRESDVEKFLRGYGKIRDISLKR---GYGFVEFDDHRDAEDAVHDLNGRDLIGERV 752
Query: 349 KVEISRKRDGPRTGNFR 399
VE S+ R G R
Sbjct: 753 VVEFSKGRRSEGGGRDR 769
Score = 28.7 bits (61), Expect = 1.9
Identities = 18/67 (26%), Positives = 29/67 (43%)
Frame = +1
Query: 154 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGIEM 333
V V L +DL+ F KYGK+ G +EFE+ + A ++ E+
Sbjct: 800 VIVENLSSRTSWQDLKDYFRKYGKVTYADAHKKRIGEGVVEFESKDDLNTAIEKLDDTEL 859
Query: 334 LGATLKV 354
G ++V
Sbjct: 860 GGRRIRV 866
>SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 718
Score = 45.6 bits (103), Expect = 2e-05
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Frame = +1
Query: 145 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL----NPPGFAFIEFENLQEAEDACS 312
G +Y+ L + I E L EF YG ++S V N GF F+ F + +EA A +
Sbjct: 211 GVNLYIKNLDDPIDDERLREEFSPYGTISSAKVMKDDKGNSKGFGFVCFSSPEEATKAVT 270
Query: 313 AMNGIEMLGATLKVEISRKRD 375
MNG ++ L V ++++R+
Sbjct: 271 EMNGRILISKPLYVALAQRRE 291
Score = 42.7 bits (96), Expect = 1e-04
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 4/79 (5%)
Frame = +1
Query: 148 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG----FAFIEFENLQEAEDACSA 315
T VYV + + E ++ + GK+ S+ V +P G F F+ FE +EAE+A +
Sbjct: 109 TNVYVKNFGDDMDDEQMKEICAEAGKIVSLKVMTDPEGKSKGFGFVSFETPEEAEEAVNV 168
Query: 316 MNGIEMLGATLKVEISRKR 372
+NG E+ G L ++KR
Sbjct: 169 LNGKEIGGRRLWAGRAKKR 187
>SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 593
Score = 45.6 bits (103), Expect = 2e-05
Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 5/73 (6%)
Frame = +1
Query: 151 RVYVGGLVEGIKKEDLEREFDKYGKLNSV---WVALNPP--GFAFIEFENLQEAEDACSA 315
RVYVG + +++E + F +G +N + W LN GFAF+E++ + A+ A
Sbjct: 103 RVYVGSINFELREEHIRTAFHPFGPINKIDLSWDPLNMKHKGFAFVEYDLPEAAQLALEQ 162
Query: 316 MNGIEMLGATLKV 354
MNG+ + G +KV
Sbjct: 163 MNGVLLGGRNIKV 175
Score = 44.4 bits (100), Expect = 4e-05
Identities = 22/73 (30%), Positives = 42/73 (57%), Gaps = 5/73 (6%)
Frame = +1
Query: 151 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDACSA 315
R+Y+ + + ++D++ F+ +GK+ ++ P G+ FIE+EN Q A DA ++
Sbjct: 200 RIYIASVHPDLLEDDIKSVFEAFGKVVHCSLSKEPMTGKHKGYGFIEYENQQSANDAIAS 259
Query: 316 MNGIEMLGATLKV 354
MN ++ G L+V
Sbjct: 260 MNLFDLGGQFLRV 272
>SB_43406| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 576
Score = 45.2 bits (102), Expect = 2e-05
Identities = 26/93 (27%), Positives = 51/93 (54%)
Frame = +1
Query: 130 IMSSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDAC 309
+++SGG V+V G+ G+ +E L+ EF+ G + V N F+ F+ + A+ A
Sbjct: 104 LIASGGKTVFVSGI--GLTEEILKEEFNHLGHVERVNFEKNRSQ-GFVTFDTWEAADKAI 160
Query: 310 SAMNGIEMLGATLKVEISRKRDGPRTGNFRGGR 408
MNG+++ ++V ++R++ + +GGR
Sbjct: 161 DEMNGLKVQHVHIRVSMARRQPNMDEMHGQGGR 193
>SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)
Length = 298
Score = 44.8 bits (101), Expect = 3e-05
Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Frame = +1
Query: 157 YVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACSAMN 321
YVGGL E + ++ L F +G + V + ++ GF F+EFE ++ A MN
Sbjct: 8 YVGGLAEEVDEKVLHAAFIPFGDITDVQIPMDYTTSKHRGFGFVEFEFAEDTAAAIDNMN 67
Query: 322 GIEMLGATLKVEISR 366
E+ G T++V +++
Sbjct: 68 ESELFGRTIRVNLAK 82
>SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 514
Score = 44.8 bits (101), Expect = 3e-05
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 5/76 (6%)
Frame = +1
Query: 142 GGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDA 306
G TR+YVG L I + ++ F+ +G ++SV + + G+ F++F + A+ A
Sbjct: 240 GPTRLYVGSLHFNITEAMVKAVFEPFGTVDSVQLIYDSETNRSKGYGFVQFREAEAAKRA 299
Query: 307 CSAMNGIEMLGATLKV 354
MNG E+ G LK+
Sbjct: 300 MEQMNGFELAGRPLKI 315
>SB_37198| Best HMM Match : RRM_1 (HMM E-Value=7.8e-23)
Length = 362
Score = 43.2 bits (97), Expect = 8e-05
Identities = 24/97 (24%), Positives = 47/97 (48%), Gaps = 5/97 (5%)
Frame = +1
Query: 109 LVNTNHTIMSSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG-----FAFI 273
L+ +H G+ +++ L + DL + F +G + S V ++ F F+
Sbjct: 264 LLKESHYTPGPDGSNLFIYHLPQEFTDADLMQTFQPFGTVISAKVFIDKQTNMSKCFGFV 323
Query: 274 EFENLQEAEDACSAMNGIEMLGATLKVEISRKRDGPR 384
++N+ A++A MNG ++ LKV++ R +D R
Sbjct: 324 SYDNVMSAQNAIQHMNGFQIGAKRLKVQLKRPKDANR 360
>SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36)
Length = 328
Score = 41.1 bits (92), Expect = 3e-04
Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 5/55 (9%)
Frame = +1
Query: 151 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAE 300
+++VGGL KE L+ F KYG+L V + ++ P GFAF++F++ EA+
Sbjct: 30 KLFVGGLSYETTKESLKEYFSKYGELVGVDIKMDALTGRPRGFAFVQFKHQSEAD 84
>SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)
Length = 1531
Score = 40.3 bits (90), Expect = 6e-04
Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Frame = +1
Query: 154 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGIEM 333
++VGG+ + ++ +ER F +YG++ V V A + F+++ A A + M G M
Sbjct: 330 IWVGGVTNSLSEQQVERHFGRYGRVTKV-VINRVTNQALVSFDSVDSATIAHAQMKGRTM 388
Query: 334 LGATLKVE-ISRK 369
++VE +SR+
Sbjct: 389 FSRRVRVEFVSRE 401
Score = 34.7 bits (76), Expect = 0.029
Identities = 18/62 (29%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Frame = +1
Query: 154 VYVGGLVEGIKKEDLEREFDKYGKLNSVWV----ALNPPGFAFIEFENLQEAEDACSAMN 321
++VG L E I++ED+ + F +YG++ SV + + +F++F +++ A A + N
Sbjct: 8 LWVGNLPENIREEDIVKHFTRYGRVESVKILPKRSAEGGRASFVDFVDIRSATKAHESPN 67
Query: 322 GI 327
I
Sbjct: 68 RI 69
Score = 30.7 bits (66), Expect = 0.48
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Frame = +1
Query: 142 GGTR-VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG--FAFIEFENLQEAEDACS 312
G TR ++VG + + DL+ F++YG++ V + P +AF++F L A A
Sbjct: 246 GCTRTLFVGNIEKTTTYGDLKEAFERYGEVIDVDIKKQPGNNPYAFVQFAELSSAIQARR 305
Query: 313 AMN 321
M+
Sbjct: 306 KMD 308
>SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 333
Score = 39.1 bits (87), Expect = 0.001
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 6/82 (7%)
Frame = +1
Query: 154 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACSAMN 321
++V L K+ ++E F K+G + V + N P G+ ++E+E A A ++
Sbjct: 173 LFVSNLPFDAKESEIEELFSKHGVVKQVRLVTNRAGKPKGYGYVEYEQESSASTAVLTLD 232
Query: 322 GIEMLGATLKVEISR--KRDGP 381
E+ G T+ V +S R GP
Sbjct: 233 KTEVKGRTISVALSNPPTRRGP 254
>SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15)
Length = 876
Score = 38.7 bits (86), Expect = 0.002
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Frame = +1
Query: 118 TNHTIMSSGGTRVYVGGLV-EGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQE 294
TN S R+++G L + I ++DLE F ++GK+ + N F F++FE +
Sbjct: 36 TNKNDPHSVRCRIFIGNLATDKIARQDLEEIFSRHGKVLGCSLHAN---FGFVQFETEKG 92
Query: 295 AEDACSAMNGIEMLGATLKVEISRKR 372
A++A + +G + G + V I R
Sbjct: 93 ADEAVAKEHGRIINGKKIDVRIVNSR 118
>SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)
Length = 1313
Score = 38.3 bits (85), Expect = 0.002
Identities = 20/75 (26%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Frame = +1
Query: 148 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACS 312
T++YV L + K+ ++ F YG++ +V + + GFA++E+ + +E E A
Sbjct: 1157 TKLYVAHLTRNVNKDHVQEIFSVYGRVKTVDLPTDRTNNLSRGFAYVEYVDPEECEKALK 1216
Query: 313 AMNGIEMLGATLKVE 357
M+G ++ G + V+
Sbjct: 1217 HMDGGQIDGQEIAVQ 1231
>SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 37.9 bits (84), Expect = 0.003
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Frame = +1
Query: 142 GGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDA 306
G T + V L EDL++ F KYG L +++ + GFAF+ F ++AEDA
Sbjct: 14 GMTSLKVDNLTYRTTVEDLKQVFKKYGDLGDIYIPRDRNTHESRGFAFVRFYEKRDAEDA 73
Query: 307 CSAMN 321
M+
Sbjct: 74 MDCMD 78
>SB_37668| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 591
Score = 37.5 bits (83), Expect = 0.004
Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
Frame = +1
Query: 169 LVEGIKKEDLEREFDKYGKLNSVWVALNPPGFA----FIEFENLQEAEDACSAMNGIEML 336
+V+ + E++E DK + +W+ +P G + + +E+ A A NG + +
Sbjct: 185 VVQVMAVEEVEEMIDKKLQKPKIWIYKHPDGSSKGECTVTYEDPPTASAAIEWFNGKDFM 244
Query: 337 GATLKVEISRKRDGPRTGNFRGGR 408
G ++KVE++ R P+ G GGR
Sbjct: 245 GQSIKVELAEART-PKFGAAGGGR 267
>SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 37.5 bits (83), Expect = 0.004
Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 9/91 (9%)
Frame = +1
Query: 121 NHTIMSSGG----TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFI 273
NH M +G T + + + + +ED+++ F G + S + + G+AF+
Sbjct: 14 NHEPMENGTSDERTNLIINYVPPSMSQEDIKKIFGTVGNVTSCKLIRDRATGQSLGYAFV 73
Query: 274 EFENLQEAEDACSAMNGIEMLGATLKVEISR 366
++N +A A MNG + TLKV +R
Sbjct: 74 NYDNPDDANKAVREMNGARLQNKTLKVSFAR 104
>SB_17244| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 299
Score = 37.1 bits (82), Expect = 0.006
Identities = 30/95 (31%), Positives = 43/95 (45%), Gaps = 10/95 (10%)
Frame = +1
Query: 151 RVYVGGLVEGIKKED--------LEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDA 306
+++VGGL E KED LE + DK + GFAF+E N +A++
Sbjct: 109 KIFVGGLPEDATKEDIQEAIESLLEEKVDKVDLIMKKEDETKHRGFAFVELNNEDQADEL 168
Query: 307 CSAMNGIEMLGATL--KVEISRKRDGPRTGNFRGG 405
C + I + G + K R R+ P G RGG
Sbjct: 169 C-CVKKIHVKGKMVEAKKATPRDRNSPADGG-RGG 201
Score = 27.9 bits (59), Expect = 3.4
Identities = 23/88 (26%), Positives = 36/88 (40%), Gaps = 7/88 (7%)
Frame = +1
Query: 151 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDAC-- 309
+++VGGL E L F+ YG+L V V + GF ++ F + + +
Sbjct: 15 KLFVGGLNRETTNETLREYFEAYGELTDVVVICDSATKKSRGFGYVTFADYKVTRNVLKD 74
Query: 310 SAMNGIEMLGATLKVEISRKRDGPRTGN 393
NG + E+ KR PR N
Sbjct: 75 KVENGAHRIDGK---EVEVKRAIPRDDN 99
>SB_53070| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 347
Score = 36.7 bits (81), Expect = 0.007
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = +1
Query: 262 FAFIEFENLQEAEDACSAMNGIEMLGATLKVEISRKRDGPR 384
F F+ ++N+ A++A MNG ++ LKV++ R +D R
Sbjct: 305 FGFVSYDNVMSAQNAIQHMNGFQIGAKRLKVQLKRPKDANR 345
>SB_47990| Best HMM Match : RRM_1 (HMM E-Value=7.8e-28)
Length = 440
Score = 36.7 bits (81), Expect = 0.007
Identities = 23/77 (29%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Frame = +1
Query: 151 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGIE 330
+VY G L ++DLE +GK+ V G+A++ F+ ++A+ A +A+N E
Sbjct: 4 KVYCGRLPATATEKDLENLVKVFGKVREVDFK---EGYAYVVFKENKDADRAVAALNNSE 60
Query: 331 MLGATLKVEISRK-RDG 378
GA + +E +++ R+G
Sbjct: 61 FHGAKILMEKAKEMRNG 77
>SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 871
Score = 36.7 bits (81), Expect = 0.007
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 6/73 (8%)
Frame = +1
Query: 154 VYVGGLVEGIKKEDLERE-FDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACSA 315
++V L K L +E F + G + VA+NP GFAF+++ +EAE A
Sbjct: 207 LFVDRLPRDFKNGGLIKELFSQTGNVTFAQVAINPANGGSRGFAFVDYATAEEAEKGQRA 266
Query: 316 MNGIEMLGATLKV 354
NG ++ G+ ++V
Sbjct: 267 HNGRQVEGSNIRV 279
>SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23)
Length = 2386
Score = 36.7 bits (81), Expect = 0.007
Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Frame = +1
Query: 154 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG----FAFIEFENLQEAEDACSAMN 321
V++GGL E + + L F+K+G + V + + G F+ F + AE A MN
Sbjct: 526 VWIGGLSEDVTENVLLELFNKFGPVKDVVILRDESGKSRQSGFVHFWSSDVAEAANVGMN 585
Query: 322 GIEMLGATLKVEISRK 369
G ++LG ++ + +++
Sbjct: 586 GCDILGKIVETKYAKE 601
>SB_28396| Best HMM Match : RRM_1 (HMM E-Value=0.00035)
Length = 258
Score = 36.3 bits (80), Expect = 0.010
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Frame = +1
Query: 259 GFAFIEFENLQEAEDACSAMNGIEMLGATLKVEISRKRD---GPRTGNFRGGR 408
GF F+ EN ++ ED +G E G LKV + K G R G + GGR
Sbjct: 84 GFGFVTLENQEDLEDVTRKFDGFEYEGRRLKVAEASKDSGGGGRRGGGYGGGR 136
>SB_29577| Best HMM Match : RRM_1 (HMM E-Value=8.5e-15)
Length = 171
Score = 35.5 bits (78), Expect = 0.017
Identities = 18/71 (25%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Frame = +1
Query: 154 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACSAM 318
+Y+G + G + ++++ F+++G +N + ++ + G+AF+EF + A+ A M
Sbjct: 100 IYLGHIPHGFFENEIKKFFEQFGTVNRIRLSRSKKSARSKGYAFVEFACDEVAKIAADTM 159
Query: 319 NGIEMLGATLK 351
+ M G LK
Sbjct: 160 HNYMMFGRLLK 170
>SB_34115| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 1572
Score = 35.1 bits (77), Expect = 0.022
Identities = 18/54 (33%), Positives = 30/54 (55%)
Frame = +1
Query: 163 GGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNG 324
GGL+ G+ +E + R F YG L V V L ++F+ +++ A +A +NG
Sbjct: 55 GGLMCGVDRESITRVFSLYGTLERV-VMLPQRSYSFVSYKSHNNALNAMRNLNG 107
>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
Length = 392
Score = 34.7 bits (76), Expect = 0.029
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Frame = +1
Query: 154 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAM 318
V+VG + +E L+ F + G + S + + P G+ F E+++ + A A +
Sbjct: 27 VFVGNIPYEASEEQLKEIFSEVGPVISFRLVFDRETGKPKGYGFCEYKDQETALSAMRNL 86
Query: 319 NGIEMLGATLKVE 357
NG E+ G L+V+
Sbjct: 87 NGYELNGRALRVD 99
>SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 610
Score = 34.7 bits (76), Expect = 0.029
Identities = 26/80 (32%), Positives = 39/80 (48%)
Frame = +1
Query: 154 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGIEM 333
VY+ L I +E L+ E+ +YG ++ V +AF+ F A A +G EM
Sbjct: 331 VYLRNLSPSITEEKLKEEYSQYGAVDRV---KKLKDYAFVHFTERDHALKAIEETDGKEM 387
Query: 334 LGATLKVEISRKRDGPRTGN 393
G LK+E S + P+ GN
Sbjct: 388 DG--LKIEASLAK--PQPGN 403
Score = 29.1 bits (62), Expect = 1.5
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 7/62 (11%)
Frame = +1
Query: 133 MSSGGTRVYVGGLVEGIKKEDLEREFDKYGK-LNSVWVALNPP------GFAFIEFENLQ 291
+S +R++VG + + K+++ EF K L+ V V L+ GFAF+E+E+ Q
Sbjct: 228 ISVANSRLFVGSIPKTKSKQEILEEFSKVTNGLDDVIVYLSADQKGKNRGFAFLEYESHQ 287
Query: 292 EA 297
A
Sbjct: 288 AA 289
Score = 28.7 bits (61), Expect = 1.9
Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 6/78 (7%)
Frame = +1
Query: 148 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDACS 312
++V++G + +++L F++ G + + ++P GFAF F N EA++A
Sbjct: 152 SQVFIGKVPRDCFEDELIPVFEECGHIYDFRLMIDPISGLTKGFAFCTFSNKDEAQNAVK 211
Query: 313 AMNGIEML-GATLKVEIS 363
++ E+ G L V IS
Sbjct: 212 KLDNKEIRPGKRLGVCIS 229
>SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 550
Score = 34.7 bits (76), Expect = 0.029
Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Frame = +1
Query: 148 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACS-AMNG 324
T +YVGGL + ++DL F ++G+L S+ + + AF+ F + AE A + N
Sbjct: 304 TTLYVGGLEGKVTEQDLRDHFYQFGELRSISM-VPRQNCAFVCFTSRAAAEAAADRSFNK 362
Query: 325 IEMLGATLKV 354
+ + G LK+
Sbjct: 363 LILKGRRLKI 372
>SB_46575| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 241
Score = 33.5 bits (73), Expect = 0.068
Identities = 19/77 (24%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Frame = +1
Query: 154 VYVGGLVEGIKKEDLERE----FDKYGKLNSVWV--ALNPPGFAFIEFENLQEAEDACSA 315
+Y+ L E IKKE+L++ F ++G + + L G AF+ F+++ A +A +
Sbjct: 9 IYIKNLNEKIKKEELKKSLYAIFSQFGPILDIVALKTLKMRGQAFVVFKDIGSATNALRS 68
Query: 316 MNGIEMLGATLKVEISR 366
M G ++++ ++
Sbjct: 69 MQGFPFYDKPMRIQYAK 85
>SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 828
Score = 32.7 bits (71), Expect = 0.12
Identities = 18/78 (23%), Positives = 35/78 (44%), Gaps = 5/78 (6%)
Frame = +1
Query: 148 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACS 312
T + V + + + + F+ LN+ + + P GF F+++ ++A+ A
Sbjct: 47 TTLIVNYIPQDMTDQTFRMMFEAVASLNNCKIVRHKPSGWSYGFGFVDYNTTEDAQKAID 106
Query: 313 AMNGIEMLGATLKVEISR 366
+NG + LKV SR
Sbjct: 107 KLNGFTIGNKVLKVAFSR 124
Score = 32.3 bits (70), Expect = 0.16
Identities = 17/77 (22%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Frame = +1
Query: 145 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDAC 309
G +YV + + + + + + F+ YG + + + + P G F+ ++ EA+ A
Sbjct: 132 GANLYVCNIPKQLPEAEFRKAFEAYGNIVNCRLLRDKSTGLPKGCGFVLYDKKAEAQAAI 191
Query: 310 SAMNGIEMLGATLKVEI 360
S+++G G+T+ ++I
Sbjct: 192 SSLSGTFFPGSTMGLQI 208
Score = 27.9 bits (59), Expect = 3.4
Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 5/65 (7%)
Frame = +1
Query: 145 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSV-----WVALNPPGFAFIEFENLQEAEDAC 309
G +YV + +E + F + G +N V W GF F+ +EA++A
Sbjct: 274 GCTLYVYNIGYDANQEGITALFGQCGIVNKVDIMWDWQRQQCKGFCFVTMATQEEAQNAI 333
Query: 310 SAMNG 324
+NG
Sbjct: 334 QTLNG 338
>SB_20581| Best HMM Match : RRM_1 (HMM E-Value=1.7e-07)
Length = 97
Score = 31.9 bits (69), Expect = 0.21
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
Frame = +1
Query: 190 EDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACSAMNG 324
ED+ F++YG + VWV + G +++F A AC M+G
Sbjct: 37 EDIRSAFEQYGTIEDVWVVKDKATKENRGVCYVKFVKASSAALACEEMDG 86
>SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 382
Score = 31.5 bits (68), Expect = 0.27
Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 8/91 (8%)
Frame = +1
Query: 145 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL------NPPGFAFIEFENLQEAEDA 306
G +++G L + ++ L F +G + + N GFAFI F + ++ A
Sbjct: 99 GANLFIGNLDTEVDEKLLYDTFSAFGVILQTPKIMRDSDTGNSKGFAFINFASFDASDAA 158
Query: 307 CSAMNGIEMLGATLKVEISRKRD--GPRTGN 393
AMNG + + V + K++ G R G+
Sbjct: 159 IEAMNGQYLCNRPITVSYAFKKESKGERHGS 189
>SB_16080| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 279
Score = 31.5 bits (68), Expect = 0.27
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Frame = +1
Query: 154 VYVGGLVEGIKKEDLER---EFDKYGKLNSVWVALNP--PGFAFIEFENLQEAEDACSAM 318
+++ L +K+EDL R F + G V+ + G AF+ F + + A A S +
Sbjct: 116 LFLKNLSNKVKEEDLIRLFLRFQQNGAPKLVFRLMKGRMKGQAFVTFPDSEVAIKAHSLV 175
Query: 319 NGIEMLGATLKVEISRKRD 375
NG + G + +E RKR+
Sbjct: 176 NGYRLKGRPVIIEFGRKRE 194
>SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28)
Length = 419
Score = 31.5 bits (68), Expect = 0.27
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Frame = +1
Query: 148 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDACS 312
T +Y+ GL +DL R KYG + S L+ G+ F++FE+ A+ A +
Sbjct: 100 TNLYIRGLKANTTDDDLVRLCHKYGTIISTKAILDKDTNLCKGYGFVDFESPISAQKAVA 159
Query: 313 AM 318
A+
Sbjct: 160 AL 161
Score = 31.5 bits (68), Expect = 0.27
Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 4/83 (4%)
Frame = +1
Query: 148 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVA----LNPPGFAFIEFENLQEAEDACSA 315
T +Y+ L + + LE F KYGK+ S + N G F E+ ++ E
Sbjct: 179 TNLYIQNLPQNCDEAMLENMFSKYGKVISTRILRDKDTNSKGVGFARMESAEKCEQVIKD 238
Query: 316 MNGIEMLGATLKVEISRKRDGPR 384
N + G ++ + GP+
Sbjct: 239 FNKKMLPGCIQELVVKFADGGPK 261
>SB_21838| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 949
Score = 30.7 bits (66), Expect = 0.48
Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Frame = +1
Query: 259 GFAFIEFENLQEAEDACSAMNG--IEMLGATLKVEISRKRDG 378
GF F+EF+ + A++ + G +++LG + VE SR ++G
Sbjct: 373 GFGFVEFDTPEAAKEWMDYLKGGPLKVLGYNIGVEYSRPKEG 414
>SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1309
Score = 30.7 bits (66), Expect = 0.48
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +1
Query: 148 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFI 273
T VYVG L +K +L++ F +YG + V + G+AFI
Sbjct: 615 TTVYVGNLPPDVKDYELQQMFSQYGSILETKVFAD-KGYAFI 655
Score = 28.3 bits (60), Expect = 2.6
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Frame = +1
Query: 154 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG---FAFIEFENLQEAEDACSAMNG 324
+YVG L +E + F+K K+ + +P + F+EFE +A++A M+
Sbjct: 371 LYVGNLDPKCTQELICSIFNKIAKVVRCKMINSPTDKGPYCFVEFETHADAQEAKFRMDQ 430
Query: 325 IEMLGATLKVEISRKRDGPRTGN 393
++ LKV + G + G+
Sbjct: 431 RTVMDKKLKVNWATNHPGMKRGD 453
>SB_57434| Best HMM Match : LRR_1 (HMM E-Value=3.9e-13)
Length = 337
Score = 29.9 bits (64), Expect = 0.84
Identities = 13/28 (46%), Positives = 20/28 (71%)
Frame = +1
Query: 154 VYVGGLVEGIKKEDLEREFDKYGKLNSV 237
V+VG L +KK+ L++ F KYG++ SV
Sbjct: 23 VFVGNLPLTLKKKALKKYFSKYGEVESV 50
>SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1291
Score = 29.9 bits (64), Expect = 0.84
Identities = 14/74 (18%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Frame = +1
Query: 127 TIMSSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQ 291
T++ ++++GGL + ++ ++ +G+L + + + G+AF E+ +L
Sbjct: 666 TVVPDSPHKIFIGGLPNYLNEDQVKELLSSFGELRAFNLVKDSATGLSKGYAFCEYVDLG 725
Query: 292 EAEDACSAMNGIEM 333
+ A +NG+++
Sbjct: 726 ITDVAIQGLNGMQL 739
>SB_6474| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 29.9 bits (64), Expect = 0.84
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +1
Query: 136 SSGGTRVYVGGLVEGIKKEDLEREFDKYG 222
S+ +V++GGL G +EDL+ F YG
Sbjct: 198 SANDGKVFIGGLAFGTTEEDLKEYFSTYG 226
>SB_44482| Best HMM Match : RRM_1 (HMM E-Value=0.19)
Length = 486
Score = 29.5 bits (63), Expect = 1.1
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +1
Query: 154 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG 261
VYVG + + K+D+ R F KYG + V V G
Sbjct: 372 VYVGKISDETHKDDVWRRFRKYGPIEKVTVHFRDNG 407
>SB_37749| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1103
Score = 29.5 bits (63), Expect = 1.1
Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 5/77 (6%)
Frame = +1
Query: 142 GGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN--PPG---FAFIEFENLQEAEDA 306
GG ++V L + DL+ F +YGK+ + N PG F + +EA
Sbjct: 347 GGKSLWVANLSSITRAADLKTRFSQYGKVVGAKIVTNSKAPGAQCFGLVTMTTSEEAAKC 406
Query: 307 CSAMNGIEMLGATLKVE 357
++ E+ G + V+
Sbjct: 407 IQHLHRTELHGRAITVD 423
>SB_16504| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 252
Score = 29.5 bits (63), Expect = 1.1
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = +1
Query: 244 ALNPPGFAFIEFENLQEAEDACSAMNGIEMLGATLKVEISRKR 372
A P G+AFIE+E+ ++ A +G ++ G + V++ R R
Sbjct: 43 ASKPRGYAFIEYEHERDMHAAYKHADGKKIDGRRIVVDVERGR 85
>SB_6593| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 539
Score = 29.5 bits (63), Expect = 1.1
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +1
Query: 118 TNHTIMSSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP 255
TNH+++ S G GG +EG L+ + + ++ W+ L P
Sbjct: 337 TNHSVVESDGVVYTCGGSIEGKASLVLQDQVLSFDTHDNTWIPLAP 382
>SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38)
Length = 496
Score = 28.7 bits (61), Expect = 1.9
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 12/66 (18%)
Frame = +1
Query: 151 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL---------NPP---GFAFIEFENLQE 294
+++VGGL +ED++ F+ + N + + NP GFAF+ F+N +
Sbjct: 140 KIFVGGLASTTVEEDIKEYFNSLCRKNGMGEVIDVDLKRDRDNPKRIRGFAFVTFDNDEI 199
Query: 295 AEDACS 312
E C+
Sbjct: 200 VEKVCA 205
>SB_27005| Best HMM Match : NTF2 (HMM E-Value=1.1e-33)
Length = 662
Score = 28.7 bits (61), Expect = 1.9
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +1
Query: 151 RVYVGGLVEGIKKEDLEREFDKYGKL 228
+V++G L G+K D+ F KYG +
Sbjct: 358 QVFIGNLPSGVKDADVNEVFSKYGTI 383
>SB_877| Best HMM Match : RRM_1 (HMM E-Value=1e-15)
Length = 145
Score = 28.7 bits (61), Expect = 1.9
Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Frame = +1
Query: 154 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL----NPPGFAFIEFENLQEAEDACSAMN 321
+Y+ I+K LE F YG + + + GF ++ +EN + A+ A + +
Sbjct: 65 IYIRDFRPDIRKSSLESVFGPYGAIEDLSIIRTQTGKSKGFGYVTYENAESAQRALAGTH 124
Query: 322 GIE 330
I+
Sbjct: 125 IID 127
>SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16)
Length = 842
Score = 28.7 bits (61), Expect = 1.9
Identities = 8/27 (29%), Positives = 20/27 (74%)
Frame = +1
Query: 151 RVYVGGLVEGIKKEDLEREFDKYGKLN 231
++++GGL +ED+++ F ++GK++
Sbjct: 184 KIFIGGLSTNTSEEDMKKYFSQFGKVS 210
>SB_12089| Best HMM Match : RRM_1 (HMM E-Value=7.4e-13)
Length = 260
Score = 28.3 bits (60), Expect = 2.6
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +1
Query: 259 GFAFIEFENLQEAEDACSAMNGIEMLGATLKVEISRKRDGPRTGNF 396
GF F+ F EA A +NG + G ++V + ++ RT +F
Sbjct: 125 GFGFVTFNTAAEANKAREKLNGTIVDGRKVEVSLCMEQSYIRTRHF 170
>SB_13046| Best HMM Match : La (HMM E-Value=5e-23)
Length = 442
Score = 28.3 bits (60), Expect = 2.6
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +1
Query: 259 GFAFIEFENLQEAEDACSAMN 321
GFAFIEFE+ Q+AE N
Sbjct: 130 GFAFIEFESKQQAEHVVQMFN 150
>SB_54569| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0018)
Length = 292
Score = 27.5 bits (58), Expect = 4.5
Identities = 13/67 (19%), Positives = 33/67 (49%)
Frame = +1
Query: 13 VVYVLRXXXXXXXXXXXXLSNFRLKLIIK*SYLVNTNHTIMSSGGTRVYVGGLVEGIKKE 192
++Y++ L+++ +K I +Y N + ++GG+ +Y+ + I +E
Sbjct: 107 ILYLIDSKPQIIAVTETKLNDYSVKNINFKNYNFFHNDSKTNAGGSALYINNSLNAIPRE 166
Query: 193 DLEREFD 213
D++ + D
Sbjct: 167 DIKLDMD 173
>SB_47530| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 939
Score = 27.5 bits (58), Expect = 4.5
Identities = 20/69 (28%), Positives = 27/69 (39%)
Frame = -3
Query: 368 FLEISTLRVAPNISMPFMALHASSASCKFSNSMNAKPGGFNATHTEFNFPYLSNSRSRSS 189
FLEI+ + NIS A + S S + P H+E F +L R +
Sbjct: 437 FLEITKTPLVANISGSEQAFKGRGELLRLSGSFSYDPDVGQGNHSEMQFAWLCR-RENET 495
Query: 188 FLIPSTSPP 162
F TS P
Sbjct: 496 FPSNVTSLP 504
>SB_17727| Best HMM Match : Exo_endo_phos (HMM E-Value=2.4e-12)
Length = 648
Score = 27.5 bits (58), Expect = 4.5
Identities = 13/67 (19%), Positives = 33/67 (49%)
Frame = +1
Query: 13 VVYVLRXXXXXXXXXXXXLSNFRLKLIIK*SYLVNTNHTIMSSGGTRVYVGGLVEGIKKE 192
++Y++ L+++ +K I +Y N + ++GG+ +Y+ + I +E
Sbjct: 107 ILYLIDSKPQIIAVTETKLNDYSVKNINFKNYNFFHNDSKTNAGGSALYINNSLNAIPRE 166
Query: 193 DLEREFD 213
D++ + D
Sbjct: 167 DIKLDMD 173
>SB_23474| Best HMM Match : Exo_endo_phos (HMM E-Value=2.4e-12)
Length = 623
Score = 27.5 bits (58), Expect = 4.5
Identities = 13/67 (19%), Positives = 33/67 (49%)
Frame = +1
Query: 13 VVYVLRXXXXXXXXXXXXLSNFRLKLIIK*SYLVNTNHTIMSSGGTRVYVGGLVEGIKKE 192
++Y++ L+++ +K I +Y N + ++GG+ +Y+ + I +E
Sbjct: 309 ILYLIDSKPQIIAVTETKLNDYSVKNINFKNYNFFHNDSKTNAGGSALYINNSLNAIPRE 368
Query: 193 DLEREFD 213
D++ + D
Sbjct: 369 DIKLDMD 375
>SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 1026
Score = 27.5 bits (58), Expect = 4.5
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +1
Query: 253 PPGFAFIEFENLQEAEDACSAMN 321
P GFAF+EF N +EA A A N
Sbjct: 623 PLGFAFVEFTNHKEALAALRATN 645
>SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3112
Score = 27.1 bits (57), Expect = 5.9
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -3
Query: 248 NATHTEFNFPYLSNSRSRSSFLIPSTSPPTYT 153
N T T + + +N + L PST+PPT T
Sbjct: 2817 NCTETGYMMAFTTNEAPIVTTLAPSTTPPTTT 2848
>SB_22891| Best HMM Match : Ank (HMM E-Value=0)
Length = 429
Score = 27.1 bits (57), Expect = 5.9
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -2
Query: 363 RDFYFESRA*HFDAVHGATRILRLL 289
+DF A H+ A+HG TRI RLL
Sbjct: 4 KDFVGGFTAMHYAAMHGRTRISRLL 28
>SB_41885| Best HMM Match : SPC12 (HMM E-Value=3.4)
Length = 171
Score = 26.6 bits (56), Expect = 7.8
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = -3
Query: 251 FNATHTEFNFPYLSNSRSRSSFLIPSTSPPTYTRVP 144
+N T PY S S +S L+P+ PP Y P
Sbjct: 97 YNKRVTSPETPYQSVSVDENSPLVPTAPPPEYQSCP 132
>SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 420
Score = 26.6 bits (56), Expect = 7.8
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +1
Query: 85 KLIIK*SYLVNTNHT-IMSSGGTRV-YVGGLVEGIKKEDLEREFDKYGKLNSV 237
K ++K S+++N + S RV YVGGL ++ + F K+G + +V
Sbjct: 134 KEVLKKSHVINGKTVDVGKSRNFRVIYVGGLPSHFTEQTVREHFKKFGVIEAV 186
>SB_36891| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2124
Score = 26.6 bits (56), Expect = 7.8
Identities = 22/79 (27%), Positives = 30/79 (37%), Gaps = 1/79 (1%)
Frame = -3
Query: 380 GPSRFLEISTLRVAPNISMPFMALHASSASCKFSNSMNAKPGGFNATHTEFN-FPYLSNS 204
GP F ++ +S +AL S + N G F T E F Y S
Sbjct: 662 GPVSFSDLGLAYNLSELSCDHLALPLSREDAR-----NLLAGTFYFTPDEIEVFTYRSKI 716
Query: 203 RSRSSFLIPSTSPPTYTRV 147
S+ SF+ PS TY +
Sbjct: 717 TSKGSFIHPSMPTATYVNI 735
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,196,632
Number of Sequences: 59808
Number of extensions: 205285
Number of successful extensions: 690
Number of sequences better than 10.0: 70
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 674
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 740151420
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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