Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_D13
         (409 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   3.1  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   3.1  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   3.1  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   4.1  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   5.4  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    21   5.4  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   5.4  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        21   7.1  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 3.1
 Identities = 10/33 (30%), Positives = 14/33 (42%)
 Frame = -3

Query: 230 FNFPYLSNSRSRSSFLIPSTSPPTYTRVPPLLM 132
           + FPYL       +F++P         VP  LM
Sbjct: 43  WRFPYLCYKNGGGAFMVPYFIALALAGVPMFLM 75


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 3.1
 Identities = 10/33 (30%), Positives = 14/33 (42%)
 Frame = -3

Query: 230 FNFPYLSNSRSRSSFLIPSTSPPTYTRVPPLLM 132
           + FPYL       +F++P         VP  LM
Sbjct: 96  WRFPYLCYKNGGGAFMVPYFIALALAGVPMFLM 128


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 3.1
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = +1

Query: 112 VNTNHTIMSSGGTRVYVGGLVEGIKKEDLEREFDKYGK 225
           V T  TI        YVG ++   + E   +E+D  G+
Sbjct: 510 VKTMKTIKKGSFVTQYVGEVITNEEAEKRGKEYDAAGR 547


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -3

Query: 320 FMALHASSASCKFSNSMNAKPGG 252
           F+A     A+C+FS    A+ GG
Sbjct: 458 FLATVVEEAACRFSAVAQAQLGG 480


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +1

Query: 226 LNSVWVALNPPGFAF 270
           L  VW+ + PPG  F
Sbjct: 641 LTLVWMIIEPPGTRF 655


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -3

Query: 230 FNFPYLSNSRSRSSFLIP 177
           + FPYL       +FLIP
Sbjct: 5   WRFPYLCYKNGGGAFLIP 22


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +1

Query: 226 LNSVWVALNPPGFAF 270
           L  VW+ + PPG  F
Sbjct: 731 LTLVWMIIEPPGTRF 745


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 6/14 (42%), Positives = 12/14 (85%)
 Frame = +1

Query: 187 KEDLEREFDKYGKL 228
           +++ +R F+KYG+L
Sbjct: 182 EQEAKRRFEKYGQL 195


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,027
Number of Sequences: 438
Number of extensions: 1848
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10256061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)