Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_D13
(409 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 70 7e-13
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 70 7e-13
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 69 9e-13
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 66 1e-11
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 64 3e-11
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 64 3e-11
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 64 3e-11
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 60 4e-10
At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR... 60 4e-10
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 60 6e-10
At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)... 58 3e-09
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 55 2e-08
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 54 5e-08
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 49 1e-06
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 49 1e-06
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 49 1e-06
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 48 2e-06
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 48 2e-06
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 48 2e-06
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ... 48 3e-06
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 48 3e-06
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu... 48 3e-06
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 47 4e-06
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 47 6e-06
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 47 6e-06
At1g51510.1 68414.m05797 RNA-binding protein, putative similar t... 46 7e-06
At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RS... 46 1e-05
At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RS... 46 1e-05
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 46 1e-05
At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RS... 46 1e-05
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 45 2e-05
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 45 2e-05
At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RS... 45 2e-05
At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RS... 45 2e-05
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 45 2e-05
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 45 2e-05
At2g46610.2 68415.m05813 arginine/serine-rich splicing factor, p... 45 2e-05
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 45 2e-05
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 44 3e-05
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 44 4e-05
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 44 4e-05
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 44 4e-05
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 44 4e-05
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 44 5e-05
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 44 5e-05
At4g18120.1 68417.m02694 RNA recognition motif (RRM)-containing ... 44 5e-05
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 44 5e-05
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 44 5e-05
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 43 7e-05
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 43 7e-05
At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ... 43 9e-05
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 43 9e-05
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 42 1e-04
At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing ... 42 1e-04
At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonu... 42 1e-04
At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonu... 42 1e-04
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 42 1e-04
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 42 1e-04
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 42 1e-04
At5g58130.1 68418.m07273 RNA recognition motif (RRM)-containing ... 42 2e-04
At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ... 42 2e-04
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 42 2e-04
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi... 42 2e-04
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 42 2e-04
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 42 2e-04
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 42 2e-04
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 41 3e-04
At5g65260.1 68418.m08209 polyadenylate-binding protein family pr... 41 4e-04
At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing ... 41 4e-04
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 41 4e-04
At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat... 41 4e-04
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 40 5e-04
At5g51120.1 68418.m06339 polyadenylate-binding protein, putative... 40 6e-04
At5g10350.2 68418.m01201 polyadenylate-binding protein family pr... 40 6e-04
At5g10350.1 68418.m01200 polyadenylate-binding protein family pr... 40 6e-04
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 40 8e-04
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 40 8e-04
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 40 8e-04
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 40 8e-04
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 40 8e-04
At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing ... 40 8e-04
At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing ... 40 8e-04
At1g07350.2 68414.m00784 transformer serine/arginine-rich ribonu... 40 8e-04
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 39 0.001
At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing ... 39 0.001
At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing ... 39 0.001
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 39 0.001
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 39 0.001
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 38 0.002
At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein ... 38 0.002
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 38 0.002
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 38 0.002
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 38 0.003
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 38 0.003
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 37 0.005
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 37 0.005
At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing ... 37 0.005
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 37 0.006
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 36 0.008
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 36 0.008
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 36 0.008
At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (... 36 0.008
At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing ... 36 0.010
At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 36 0.010
At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ... 36 0.010
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 36 0.010
At5g02530.1 68418.m00187 RNA and export factor-binding protein, ... 36 0.014
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 36 0.014
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 36 0.014
At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing ... 36 0.014
At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing ... 35 0.018
At5g43960.2 68418.m05378 nuclear transport factor 2 (NTF2) famil... 35 0.018
At5g43960.1 68418.m05379 nuclear transport factor 2 (NTF2) famil... 35 0.018
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 35 0.018
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 35 0.018
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 35 0.018
At5g44200.1 68418.m05408 nuclear cap-binding protein, putative s... 35 0.024
At5g59950.3 68418.m07518 RNA and export factor-binding protein, ... 34 0.032
At5g59950.2 68418.m07519 RNA and export factor-binding protein, ... 34 0.032
At5g59950.1 68418.m07517 RNA and export factor-binding protein, ... 34 0.032
At2g47310.1 68415.m05906 flowering time control protein-related ... 34 0.032
At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing ... 34 0.042
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 34 0.042
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 34 0.042
At5g37720.1 68418.m04541 RNA and export factor-binding protein, ... 33 0.056
At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing ... 33 0.056
At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein ... 33 0.056
At1g66260.1 68414.m07522 RNA and export factor-binding protein, ... 33 0.056
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 33 0.074
At1g06960.2 68414.m00741 small nuclear ribonucleoprotein U2B, pu... 33 0.074
At1g06960.1 68414.m00740 small nuclear ribonucleoprotein U2B, pu... 33 0.074
At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing ... 33 0.097
At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, ... 33 0.097
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 33 0.097
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 33 0.097
At1g09230.1 68414.m01030 RNA recognition motif (RRM)-containing ... 33 0.097
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 32 0.13
At5g16260.1 68418.m01899 RNA recognition motif (RRM)-containing ... 32 0.13
At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein... 32 0.17
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 32 0.17
At2g30260.1 68415.m03684 small nuclear ribonucleoprotein U2B, pu... 32 0.17
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 32 0.17
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 32 0.17
At4g32720.1 68417.m04657 RNA recognition motif (RRM)-containing ... 31 0.22
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 31 0.22
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 31 0.22
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 31 0.22
At3g23900.1 68416.m03003 RNA recognition motif (RRM)-containing ... 31 0.30
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 31 0.30
At2g15530.2 68415.m01778 zinc finger (C3HC4-type RING finger) fa... 31 0.30
At2g15530.1 68415.m01777 zinc finger (C3HC4-type RING finger) fa... 31 0.30
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 31 0.30
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 31 0.30
At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing ... 31 0.39
At5g06000.1 68418.m00665 eukaryotic translation initiation facto... 31 0.39
At3g26120.1 68416.m03257 RNA-binding protein, putative similar t... 31 0.39
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 31 0.39
At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly id... 31 0.39
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 30 0.52
At3g61130.1 68416.m06841 glycosyl transferase family 8 protein c... 30 0.52
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 30 0.52
At5g03580.1 68418.m00316 polyadenylate-binding protein, putative... 30 0.69
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 30 0.69
At3g49390.1 68416.m05399 RNA-binding protein, putative RNA-bindi... 29 0.91
At3g27700.2 68416.m03459 RNA recognition motif (RRM)-containing ... 29 0.91
At3g27700.1 68416.m03458 RNA recognition motif (RRM)-containing ... 29 0.91
At2g42240.1 68415.m05228 RNA recognition motif (RRM)-containing ... 29 0.91
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 29 0.91
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 29 0.91
At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing ... 29 1.2
At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containi... 29 1.2
At4g28170.1 68417.m04039 hypothetical protein 29 1.2
At2g33440.1 68415.m04099 splicing factor family protein similar ... 29 1.2
At1g43190.1 68414.m04977 polypyrimidine tract-binding protein, p... 29 1.2
At5g27640.1 68418.m03311 eukaryotic translation initiation facto... 29 1.6
At1g69250.1 68414.m07936 nuclear transport factor 2 (NTF2) famil... 29 1.6
At1g67770.1 68414.m07733 RNA-binding protein, putative similar t... 29 1.6
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 29 1.6
At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing ... 28 2.1
At1g79880.3 68414.m09332 La domain-containing protein contains P... 28 2.1
At1g79880.2 68414.m09331 La domain-containing protein contains P... 28 2.1
At1g79880.1 68414.m09333 La domain-containing protein contains P... 28 2.1
At1g05510.1 68414.m00563 expressed protein 28 2.1
At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing ... 28 2.8
At5g07060.1 68418.m00799 zinc finger (CCCH-type) family protein ... 28 2.8
At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing ... 28 2.8
At3g14450.1 68416.m01831 RNA-binding protein, putative contains ... 28 2.8
At1g57600.1 68414.m06536 membrane bound O-acyl transferase (MBOA... 28 2.8
At4g25110.1 68417.m03612 latex-abundant family protein (AMC2) / ... 27 3.7
At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing ... 27 3.7
At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing ... 27 3.7
At1g10320.1 68414.m01162 U2 snRNP auxiliary factor-related simil... 27 3.7
At5g45840.1 68418.m05639 leucine-rich repeat transmembrane prote... 27 4.8
At5g41690.1 68418.m05067 polyadenylate-binding protein, putative... 27 4.8
At5g65770.1 68418.m08276 nuclear matrix constituent protein-rela... 27 6.4
At2g20720.1 68415.m02433 pentatricopeptide (PPR) repeat-containi... 27 6.4
At1g65850.1 68414.m07472 disease resistance protein (TIR-NBS-LRR... 27 6.4
At1g53650.1 68414.m06105 RNA-binding protein, putative similar t... 27 6.4
At1g26400.1 68414.m03220 FAD-binding domain-containing protein s... 27 6.4
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 26 8.5
At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing ... 26 8.5
At3g42730.1 68416.m04462 Ulp1 protease family protein contains P... 26 8.5
At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putativ... 26 8.5
>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 69.7 bits (163), Expect = 7e-13
Identities = 39/87 (44%), Positives = 54/87 (62%)
Frame = +1
Query: 148 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGI 327
TRVYVG L + + +LE EF +G L +VWVA PPG+AF+EF++ ++A DA SA++
Sbjct: 2 TRVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPGYAFLEFDDERDALDAISALDRK 61
Query: 328 EMLGATLKVEISRKRDGPRTGNFRGGR 408
+VE+S K G R G GGR
Sbjct: 62 N----GWRVELSHKDKGGRGGG--GGR 82
>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 69.7 bits (163), Expect = 7e-13
Identities = 39/87 (44%), Positives = 54/87 (62%)
Frame = +1
Query: 148 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGI 327
TRVYVG L + + +LE EF +G L +VWVA PPG+AF+EF++ ++A DA SA++
Sbjct: 2 TRVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPGYAFLEFDDERDALDAISALDRK 61
Query: 328 EMLGATLKVEISRKRDGPRTGNFRGGR 408
+VE+S K G R G GGR
Sbjct: 62 N----GWRVELSHKDKGGRGGG--GGR 82
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 69.3 bits (162), Expect = 9e-13
Identities = 38/86 (44%), Positives = 53/86 (61%)
Frame = +1
Query: 148 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGI 327
+RVYVG L + + +LE EF +G + SVWVA PPG+AF++FE+ ++A DA A++G
Sbjct: 2 SRVYVGNLDPRVTERELEDEFRAFGVVRSVWVARRPPGYAFLDFEDPRDARDAIRALDGK 61
Query: 328 EMLGATLKVEISRKRDGPRTGNFRGG 405
+VE S R G R G RGG
Sbjct: 62 N----GWRVEQSHNR-GERGGGGRGG 82
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 65.7 bits (153), Expect = 1e-11
Identities = 34/86 (39%), Positives = 51/86 (59%)
Frame = +1
Query: 148 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGI 327
+RVYVG L + + +LE EF +G + SVWVA PPG+AF++FE+ ++A DA ++G
Sbjct: 2 SRVYVGNLDPRVTERELEDEFRSFGVIRSVWVARRPPGYAFLDFEDSRDARDAIREVDGK 61
Query: 328 EMLGATLKVEISRKRDGPRTGNFRGG 405
G ++ +R G R G GG
Sbjct: 62 N--GWRVEQSHNRGGGGGRGGGRGGG 85
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 64.1 bits (149), Expect = 3e-11
Identities = 36/97 (37%), Positives = 58/97 (59%), Gaps = 6/97 (6%)
Frame = +1
Query: 133 MSSGGTR-VYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL--NPPGFAFIEFENLQEAED 303
MSS +R VYVG L I++ ++E F KYG + + + + PPG+AF+EF++ ++AED
Sbjct: 1 MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60
Query: 304 ACSAMNGIEMLGATLKVEIS---RKRDGPRTGNFRGG 405
A +G + G L+VE++ R+ G+F GG
Sbjct: 61 AIHGRDGYDFDGHRLRVELAHGGRRSSDDTRGSFNGG 97
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 64.1 bits (149), Expect = 3e-11
Identities = 36/97 (37%), Positives = 58/97 (59%), Gaps = 6/97 (6%)
Frame = +1
Query: 133 MSSGGTR-VYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL--NPPGFAFIEFENLQEAED 303
MSS +R VYVG L I++ ++E F KYG + + + + PPG+AF+EF++ ++AED
Sbjct: 1 MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60
Query: 304 ACSAMNGIEMLGATLKVEIS---RKRDGPRTGNFRGG 405
A +G + G L+VE++ R+ G+F GG
Sbjct: 61 AIHGRDGYDFDGHRLRVELAHGGRRSSDDTRGSFNGG 97
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 64.1 bits (149), Expect = 3e-11
Identities = 36/97 (37%), Positives = 58/97 (59%), Gaps = 6/97 (6%)
Frame = +1
Query: 133 MSSGGTR-VYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL--NPPGFAFIEFENLQEAED 303
MSS +R VYVG L I++ ++E F KYG + + + + PPG+AF+EF++ ++AED
Sbjct: 1 MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60
Query: 304 ACSAMNGIEMLGATLKVEIS---RKRDGPRTGNFRGG 405
A +G + G L+VE++ R+ G+F GG
Sbjct: 61 AIHGRDGYDFDGHRLRVELAHGGRRSSDDTRGSFNGG 97
>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 278
Score = 60.5 bits (140), Expect = 4e-10
Identities = 37/102 (36%), Positives = 58/102 (56%), Gaps = 10/102 (9%)
Frame = +1
Query: 133 MSSGGTR-VYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL--NPPGFAFIEFENLQEAED 303
MSS +R +YVG L I++ ++E F KYG + + + + PPG+AF+EFE+ ++A+D
Sbjct: 1 MSSRSSRTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADD 60
Query: 304 ACSAMNGIEMLGATLKVEI-------SRKRDGPRTGNFRGGR 408
A +G + G L+VE+ S G +G RGGR
Sbjct: 61 AIYGRDGYDFDGHHLRVELAHGGRRSSHDARGSYSGRGRGGR 102
>At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 178
Score = 60.5 bits (140), Expect = 4e-10
Identities = 37/102 (36%), Positives = 58/102 (56%), Gaps = 10/102 (9%)
Frame = +1
Query: 133 MSSGGTR-VYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL--NPPGFAFIEFENLQEAED 303
MSS +R +YVG L I++ ++E F KYG + + + + PPG+AF+EFE+ ++A+D
Sbjct: 1 MSSRSSRTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADD 60
Query: 304 ACSAMNGIEMLGATLKVEI-------SRKRDGPRTGNFRGGR 408
A +G + G L+VE+ S G +G RGGR
Sbjct: 61 AIYGRDGYDFDGHHLRVELAHGGRRSSHDARGSYSGRGRGGR 102
>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
similarity to SP|O22315 Pre-mRNA splicing factor SF2
(SR1 protein) {Arabidopsis thaliana}
Length = 300
Score = 60.1 bits (139), Expect = 6e-10
Identities = 29/86 (33%), Positives = 51/86 (59%), Gaps = 2/86 (2%)
Frame = +1
Query: 154 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL--NPPGFAFIEFENLQEAEDACSAMNGI 327
+YVG L I++ ++E F KYG++ + + + PP + F+EFE+ ++AEDA +G
Sbjct: 9 IYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAEDAIKGRDGY 68
Query: 328 EMLGATLKVEISRKRDGPRTGNFRGG 405
+ G L+VE++ G + + RGG
Sbjct: 69 NLDGCRLRVELAHGGRGQSSSDRRGG 94
>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
nearly identical to SF2/ASF-like splicing modulator
Srp30 [Arabidopsis thaliana] GI:4775270
Length = 268
Score = 57.6 bits (133), Expect = 3e-09
Identities = 32/80 (40%), Positives = 50/80 (62%), Gaps = 3/80 (3%)
Frame = +1
Query: 133 MSSGGTR-VYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL--NPPGFAFIEFENLQEAED 303
MSS R +YVG L I+K ++E F KYG + + + + PPG+AF+EFE+ ++A+D
Sbjct: 1 MSSRWNRTIYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDADD 60
Query: 304 ACSAMNGIEMLGATLKVEIS 363
A +G + G L+VEI+
Sbjct: 61 AIYGRDGYDFDGCRLRVEIA 80
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 54.8 bits (126), Expect = 2e-08
Identities = 32/89 (35%), Positives = 50/89 (56%)
Frame = +1
Query: 142 GGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMN 321
G TR+YVG L + DLER F +YG++ V + + +AF+EF + ++A+DA ++
Sbjct: 9 GNTRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRD---YAFVEFSDPRDADDARYYLD 65
Query: 322 GIEMLGATLKVEISRKRDGPRTGNFRGGR 408
G + G+ + VE S R PR G R
Sbjct: 66 GRDFDGSRITVEAS--RGAPRGSRDNGSR 92
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 53.6 bits (123), Expect = 5e-08
Identities = 32/88 (36%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
Frame = +1
Query: 142 GGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMN 321
G TR+YVG L + DLER F +YG++ V + + +AF+EF + ++A+DA ++
Sbjct: 9 GNTRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRD---YAFVEFGDPRDADDARHYLD 65
Query: 322 GIEMLGATLKVEISRKRD-GPRTGNFRG 402
G + G+ + VE SR G R + RG
Sbjct: 66 GRDFDGSRITVEFSRGAPRGSRDFDSRG 93
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 49.2 bits (112), Expect = 1e-06
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 5/82 (6%)
Frame = +1
Query: 148 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL-----NPPGFAFIEFENLQEAEDACS 312
+R++VGGL + + LE FD+YGK+ + + P GF FI F + + A+DA
Sbjct: 12 SRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIK 71
Query: 313 AMNGIEMLGATLKVEISRKRDG 378
M+G E+ + V + + G
Sbjct: 72 HMHGRELGNKVISVNKAEPKVG 93
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 49.2 bits (112), Expect = 1e-06
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 5/82 (6%)
Frame = +1
Query: 148 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL-----NPPGFAFIEFENLQEAEDACS 312
+R++VGGL + + LE FD+YGK+ + + P GF FI F + + A+DA
Sbjct: 12 SRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIK 71
Query: 313 AMNGIEMLGATLKVEISRKRDG 378
M+G E+ + V + + G
Sbjct: 72 HMHGRELGNKVISVNKAEPKVG 93
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 48.8 bits (111), Expect = 1e-06
Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 5/90 (5%)
Frame = +1
Query: 136 SSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP----PGFAFIEFENLQEAED 303
S G R+YVG L + ++DL + F+ +G + V V + GF F++F L++A +
Sbjct: 281 SGGARRLYVGNLHINMSEDDLRKVFESFGSVELVQVPRDETGLCKGFGFVQFARLEDARN 340
Query: 304 ACSAMNGIEMLGATLKVE-ISRKRDGPRTG 390
A + +E+ G +KV ++ + + P G
Sbjct: 341 ALNLNGQLEIAGRAIKVSAVTDQTEVPEAG 370
Score = 46.8 bits (106), Expect = 6e-06
Identities = 21/46 (45%), Positives = 30/46 (65%)
Frame = +1
Query: 187 KEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNG 324
KED++ E K+GKLN ++V N GF ++ FEN Q A A A++G
Sbjct: 488 KEDVKEECSKFGKLNHIFVDKNSVGFVYLRFENAQAAIGAQRALHG 533
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 48.0 bits (109), Expect = 2e-06
Identities = 31/96 (32%), Positives = 46/96 (47%), Gaps = 5/96 (5%)
Frame = +1
Query: 133 MSSGGTRVYVGGLVEGIKKEDLEREFDKYG-----KLNSVWVALNPPGFAFIEFENLQEA 297
MS R +VGGL EDL+R F ++G K+ + + GF F+ F++ +
Sbjct: 1 MSEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAM 60
Query: 298 EDACSAMNGIEMLGATLKVEISRKRDGPRTGNFRGG 405
DA MNG E+ G + V ++ R G RGG
Sbjct: 61 RDAIEEMNGKELDGRVITVNEAQSRGSGGGGGGRGG 96
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 48.0 bits (109), Expect = 2e-06
Identities = 31/96 (32%), Positives = 46/96 (47%), Gaps = 5/96 (5%)
Frame = +1
Query: 133 MSSGGTRVYVGGLVEGIKKEDLEREFDKYG-----KLNSVWVALNPPGFAFIEFENLQEA 297
MS R +VGGL EDL+R F ++G K+ + + GF F+ F++ +
Sbjct: 1 MSEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAM 60
Query: 298 EDACSAMNGIEMLGATLKVEISRKRDGPRTGNFRGG 405
DA MNG E+ G + V ++ R G RGG
Sbjct: 61 RDAIEEMNGKELDGRVITVNEAQSRGSGGGGGGRGG 96
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 48.0 bits (109), Expect = 2e-06
Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 5/87 (5%)
Frame = +1
Query: 139 SGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP----GFAFIEFENLQEAEDA 306
S G +Y+ L + + E L+ F +YG + S V LNP GF F+ + N +EA A
Sbjct: 329 SQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRA 388
Query: 307 CSAMNGIEMLG-ATLKVEISRKRDGPR 384
S MNG +M+G L + ++++++ R
Sbjct: 389 LSEMNG-KMIGRKPLYIALAQRKEDRR 414
Score = 42.3 bits (95), Expect = 1e-04
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Frame = +1
Query: 148 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG----FAFIEFENLQEAEDACSA 315
T VYV L + I +++L + F K+G ++S V + G F F+ FE + A A
Sbjct: 229 TNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEK 288
Query: 316 MNGIEMLGATLKVEISRKR 372
MNGI + L V ++K+
Sbjct: 289 MNGISLGDDVLYVGRAQKK 307
Score = 34.7 bits (76), Expect = 0.024
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
Frame = +1
Query: 109 LVNTNHTIMSSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIE 276
L N + + SG +++ L I + L F +G + S VA++ G+ F++
Sbjct: 123 LSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQ 182
Query: 277 FENLQEAEDACSAMNGIEM 333
FE + A+ A +NG+ M
Sbjct: 183 FEKEESAQAAIDKLNGMLM 201
>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1056
Score = 47.6 bits (108), Expect = 3e-06
Identities = 28/83 (33%), Positives = 47/83 (56%)
Frame = +1
Query: 154 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGIEM 333
++VGG+ + K+DLE EF K+GK+ + L AFI++ + +A A +MNG M
Sbjct: 252 LWVGGIGPNVSKDDLEEEFSKFGKIED-FRFLRERKTAFIDYYEMDDALQA-KSMNGKPM 309
Query: 334 LGATLKVEISRKRDGPRTGNFRG 402
G+ L+V+ R + P+ + G
Sbjct: 310 GGSFLRVDFLRSQ-APKKEQWAG 331
Score = 37.9 bits (84), Expect = 0.003
Identities = 20/62 (32%), Positives = 34/62 (54%)
Frame = +1
Query: 154 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGIEM 333
++VG L + DL F +YG ++ + V + GFAFI + +++EA A A+ G +
Sbjct: 20 LWVGSLTPETTESDLTELFGRYGDIDRITV-YSSRGFAFIYYRHVEEAVAAKEALQGANL 78
Query: 334 LG 339
G
Sbjct: 79 NG 80
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 47.6 bits (108), Expect = 3e-06
Identities = 23/73 (31%), Positives = 43/73 (58%)
Frame = +1
Query: 148 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGI 327
T ++VGGL + EDL++ F+++G++ SV + + G F++F N AE+A +NG
Sbjct: 304 TTIFVGGLDSSVTDEDLKQPFNEFGEIVSVKIPVG-KGCGFVQFVNRPNAEEALEKLNGT 362
Query: 328 EMLGATLKVEISR 366
+ T+++ R
Sbjct: 363 VIGKQTVRLSWGR 375
>At1g07350.1 68414.m00783 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 382
Score = 47.6 bits (108), Expect = 3e-06
Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 7/95 (7%)
Frame = +1
Query: 145 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDAC 309
G +YV GL + + DLE F K GK+ V + L+P GF FI +++ +A
Sbjct: 74 GNSLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCI 133
Query: 310 SAMNGIEMLGATLKVEISRKRDG--PRTGNFRGGR 408
+++ + G + VE +R+R G P G + G R
Sbjct: 134 RSLDHSVLQGRVITVEKARRRRGRTPTPGKYLGLR 168
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 47.2 bits (107), Expect = 4e-06
Identities = 23/73 (31%), Positives = 42/73 (57%)
Frame = +1
Query: 148 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGI 327
T ++VGGL + EDL++ F ++G++ SV + + G F++F N AE+A +NG
Sbjct: 306 TTIFVGGLDSSVTDEDLKQPFSEFGEIVSVKIPVG-KGCGFVQFVNRPNAEEALEKLNGT 364
Query: 328 EMLGATLKVEISR 366
+ T+++ R
Sbjct: 365 VIGKQTVRLSWGR 377
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 46.8 bits (106), Expect = 6e-06
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Frame = +1
Query: 151 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDACSA 315
R ++GGL L F+KYG L V L+ GF FI F+ + ++A +A
Sbjct: 8 RCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAA 67
Query: 316 MNGIEMLGATLKVEISRKRDG 378
MNG+++ G T+ V+ ++ G
Sbjct: 68 MNGMDLDGRTITVDKAQPHQG 88
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 46.8 bits (106), Expect = 6e-06
Identities = 24/76 (31%), Positives = 43/76 (56%)
Frame = +1
Query: 139 SGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAM 318
S + ++VGGL + +EDL + F +G++ SV + + G F++F N Q AE+A +
Sbjct: 324 SNNSTIFVGGLDADVTEEDLMQPFSDFGEVVSVKIPVG-KGCGFVQFANRQSAEEAIGNL 382
Query: 319 NGIEMLGATLKVEISR 366
NG + T+++ R
Sbjct: 383 NGTVIGKNTVRLSWGR 398
>At1g51510.1 68414.m05797 RNA-binding protein, putative similar to
RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9
from [Homo sapiens], RNA-binding protein Y14 [Xenopus
laevis] GI:11034807; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 202
Score = 46.4 bits (105), Expect = 7e-06
Identities = 25/76 (32%), Positives = 44/76 (57%), Gaps = 5/76 (6%)
Frame = +1
Query: 145 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDAC 309
G + V G+ E ++ED+ F +G++ ++ + L+ G+A IE+E +EA+ A
Sbjct: 94 GWIILVSGVHEETQEEDITNAFGDFGEIKNLNLNLDRRSGYVKGYALIEYEKKEEAQSAI 153
Query: 310 SAMNGIEMLGATLKVE 357
SAMNG E+L + V+
Sbjct: 154 SAMNGAELLTQNVSVD 169
>At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 357
Score = 46.0 bits (104), Expect = 1e-05
Identities = 26/73 (35%), Positives = 41/73 (56%)
Frame = +1
Query: 175 EGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGIEMLGATLKV 354
+ + DLER F+ YGK+ +V + N FAFI++E ++A A A N +++ + V
Sbjct: 106 QNTRTRDLERHFEPYGKIVNVRIRRN---FAFIQYEAQEDATRALDATNSSKLMDKVISV 162
Query: 355 EISRKRDGPRTGN 393
E + K D R GN
Sbjct: 163 EYAVKDDDSR-GN 174
Score = 45.2 bits (102), Expect = 2e-05
Identities = 32/87 (36%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Frame = +1
Query: 154 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGIE- 330
V+ G ++ DLER F KYGK+ V + GFAF+ E+ ++AEDA A++ E
Sbjct: 4 VFCGNFEYDARESDLERLFRKYGKVERVDM---KAGFAFVYMEDERDAEDAIRALDRFEY 60
Query: 331 -MLGATLKVEISRKRDGPRTGNFRGGR 408
G L+VE + K D G G R
Sbjct: 61 GRTGRRLRVEWT-KNDRGGAGRSGGSR 86
>At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 356
Score = 46.0 bits (104), Expect = 1e-05
Identities = 26/73 (35%), Positives = 41/73 (56%)
Frame = +1
Query: 175 EGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGIEMLGATLKV 354
+ + DLER F+ YGK+ +V + N FAFI++E ++A A A N +++ + V
Sbjct: 106 QNTRTRDLERHFEPYGKIVNVRIRRN---FAFIQYEAQEDATRALDATNSSKLMDKVISV 162
Query: 355 EISRKRDGPRTGN 393
E + K D R GN
Sbjct: 163 EYAVKDDDSR-GN 174
Score = 45.2 bits (102), Expect = 2e-05
Identities = 32/87 (36%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Frame = +1
Query: 154 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGIE- 330
V+ G ++ DLER F KYGK+ V + GFAF+ E+ ++AEDA A++ E
Sbjct: 4 VFCGNFEYDARESDLERLFRKYGKVERVDM---KAGFAFVYMEDERDAEDAIRALDRFEY 60
Query: 331 -MLGATLKVEISRKRDGPRTGNFRGGR 408
G L+VE + K D G G R
Sbjct: 61 GRTGRRLRVEWT-KNDRGGAGRSGGSR 86
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 46.0 bits (104), Expect = 1e-05
Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Frame = +1
Query: 148 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACSA 315
T VYV L E +DL+ F +YGK+ S V + GF F+ FEN +A A +
Sbjct: 29 TNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVES 88
Query: 316 MNG 324
+NG
Sbjct: 89 LNG 91
>At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RSP31
(RSP31) identical to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 264
Score = 45.6 bits (103), Expect = 1e-05
Identities = 25/75 (33%), Positives = 41/75 (54%)
Frame = +1
Query: 184 KKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGIEMLGATLKVEIS 363
K+ D+E+ F+ YGK+ +V + N F+F++FE ++A A A ++L + VE +
Sbjct: 106 KEHDIEKHFEPYGKVTNVRIRRN---FSFVQFETQEDATKALEATQRSKILDRVVSVEYA 162
Query: 364 RKRDGPRTGNFRGGR 408
K D R GGR
Sbjct: 163 LKDDDERDDR-NGGR 176
Score = 43.6 bits (98), Expect = 5e-05
Identities = 22/51 (43%), Positives = 34/51 (66%)
Frame = +1
Query: 154 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDA 306
V+VG ++ DLER FDKYG+++ V + G+AF+ FE+ ++AEDA
Sbjct: 4 VFVGNFEYETRQSDLERLFDKYGRVDRVDM---KSGYAFVYFEDERDAEDA 51
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 45.2 bits (102), Expect = 2e-05
Identities = 26/97 (26%), Positives = 47/97 (48%), Gaps = 5/97 (5%)
Frame = +1
Query: 130 IMSSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQE 294
I +++++GG+ + ++ L F KYG++ V L+ GF F+ F + +
Sbjct: 34 IRCMSSSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEA 93
Query: 295 AEDACSAMNGIEMLGATLKVEISRKRDGPRTGNFRGG 405
A A A++G ++ G +KV + R G F GG
Sbjct: 94 ASSAIQALDGRDLHGRVVKVNYANDRTS--GGGFGGG 128
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 45.2 bits (102), Expect = 2e-05
Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 8/95 (8%)
Frame = +1
Query: 148 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACS 312
T + V L ++EDL R F+++G + +++ + P GF FI+F + +A +A
Sbjct: 37 TSLLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKH 96
Query: 313 AMNGIEMLGATLKV---EISRKRDGPRTGNFRGGR 408
M+G +LG L V E +RK+ RGGR
Sbjct: 97 QMDGYLLLGRELTVVFAEENRKKPTEMRTRDRGGR 131
>At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 309
Score = 44.8 bits (101), Expect = 2e-05
Identities = 25/73 (34%), Positives = 41/73 (56%)
Frame = +1
Query: 175 EGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGIEMLGATLKV 354
+ + DLE+ F+ YGK+ +V + N FAFI++E ++A A A N +++ + V
Sbjct: 66 DNTRTRDLEKHFEPYGKIVNVRIRRN---FAFIQYEAQEDATRALDASNNSKLMDKVISV 122
Query: 355 EISRKRDGPRTGN 393
E + K D R GN
Sbjct: 123 EYAVKDDDAR-GN 134
>At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 350
Score = 44.8 bits (101), Expect = 2e-05
Identities = 25/73 (34%), Positives = 41/73 (56%)
Frame = +1
Query: 175 EGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGIEMLGATLKV 354
+ + DLE+ F+ YGK+ +V + N FAFI++E ++A A A N +++ + V
Sbjct: 107 DNTRTRDLEKHFEPYGKIVNVRIRRN---FAFIQYEAQEDATRALDASNNSKLMDKVISV 163
Query: 355 EISRKRDGPRTGN 393
E + K D R GN
Sbjct: 164 EYAVKDDDAR-GN 175
Score = 44.0 bits (99), Expect = 4e-05
Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Frame = +1
Query: 154 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGIEM 333
V+ G ++ DLER F KYGK+ V + GFAF+ E+ ++AEDA A++ E
Sbjct: 4 VFCGNFEYDAREGDLERLFRKYGKVERVDMKA---GFAFVYMEDERDAEDAIRALDRFEF 60
Query: 334 --LGATLKVEISRKRDG 378
G L+VE ++ G
Sbjct: 61 GRKGRRLRVEWTKSERG 77
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 44.8 bits (101), Expect = 2e-05
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 5/92 (5%)
Frame = +1
Query: 136 SSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAE 300
S G R+YVG L G+ LE F++ GK+ V + GF F+ + QE +
Sbjct: 245 SGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQ 304
Query: 301 DACSAMNGIEMLGATLKVEISRKRDGPRTGNF 396
A +++NG ++ G ++V + R P G F
Sbjct: 305 KAINSLNGADLDGRQIRVSEAEAR--PPRGQF 334
Score = 33.1 bits (72), Expect = 0.074
Identities = 29/101 (28%), Positives = 42/101 (41%), Gaps = 16/101 (15%)
Frame = +1
Query: 151 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACSA 315
+++VG L + L + F+ G + V V + GF F+ E E A
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159
Query: 316 MNGIEMLGATLKVEIS---RKRD-----GPRTGNF---RGG 405
NG E G L+V KR+ GPR+G + RGG
Sbjct: 160 FNGYEFEGRPLRVNAGPPPPKREESFSRGPRSGGYGSERGG 200
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 44.8 bits (101), Expect = 2e-05
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 5/92 (5%)
Frame = +1
Query: 136 SSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAE 300
S G R+YVG L G+ LE F++ GK+ V + GF F+ + QE +
Sbjct: 253 SGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQ 312
Query: 301 DACSAMNGIEMLGATLKVEISRKRDGPRTGNF 396
A +++NG ++ G ++V + R P G F
Sbjct: 313 KAINSLNGADLDGRQIRVSEAEAR--PPRGQF 342
Score = 33.1 bits (72), Expect = 0.074
Identities = 29/101 (28%), Positives = 42/101 (41%), Gaps = 16/101 (15%)
Frame = +1
Query: 151 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACSA 315
+++VG L + L + F+ G + V V + GF F+ E E A
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159
Query: 316 MNGIEMLGATLKVEIS---RKRD-----GPRTGNF---RGG 405
NG E G L+V KR+ GPR+G + RGG
Sbjct: 160 FNGYEFEGRPLRVNAGPPPPKREESFSRGPRSGGYGSERGG 200
>At2g46610.2 68415.m05813 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 224
Score = 44.8 bits (101), Expect = 2e-05
Identities = 22/75 (29%), Positives = 41/75 (54%)
Frame = +1
Query: 184 KKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGIEMLGATLKVEIS 363
++ D+ER F+ YGK+ +V + N FAF++F ++A A + + ++L + VE +
Sbjct: 82 RERDMERHFEPYGKVLNVRMRRN---FAFVQFATQEDATKALDSTHNSKLLDKVVSVEYA 138
Query: 364 RKRDGPRTGNFRGGR 408
+ G R + G R
Sbjct: 139 LREAGEREDRYAGSR 153
>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 250
Score = 44.8 bits (101), Expect = 2e-05
Identities = 22/75 (29%), Positives = 41/75 (54%)
Frame = +1
Query: 184 KKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGIEMLGATLKVEIS 363
++ D+ER F+ YGK+ +V + N FAF++F ++A A + + ++L + VE +
Sbjct: 108 RERDMERHFEPYGKVLNVRMRRN---FAFVQFATQEDATKALDSTHNSKLLDKVVSVEYA 164
Query: 364 RKRDGPRTGNFRGGR 408
+ G R + G R
Sbjct: 165 LREAGEREDRYAGSR 179
Score = 39.9 bits (89), Expect = 6e-04
Identities = 21/51 (41%), Positives = 31/51 (60%)
Frame = +1
Query: 154 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDA 306
VYVG + DLER F K+G++ V + G+AF+ FE+ ++AEDA
Sbjct: 4 VYVGNFDYDTRHSDLERLFSKFGRVKRVDM---KSGYAFVYFEDERDAEDA 51
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 44.4 bits (100), Expect = 3e-05
Identities = 22/82 (26%), Positives = 43/82 (52%)
Frame = +1
Query: 148 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGI 327
T V+VGGL + + L+ F +YG++ V + F++F AE+A +NG+
Sbjct: 261 TTVFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAG-KRCGFVQFSEKSCAEEALRMLNGV 319
Query: 328 EMLGATLKVEISRKRDGPRTGN 393
++ G T+++ R ++G+
Sbjct: 320 QLGGTTVRLSWGRSPSNKQSGD 341
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 44.0 bits (99), Expect = 4e-05
Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 5/91 (5%)
Frame = +1
Query: 148 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACS 312
++++VGGL G L++ F +G++ V + GF F+ F A +A
Sbjct: 35 SKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIK 94
Query: 313 AMNGIEMLGATLKVEISRKRDGPRTGNFRGG 405
M+G E+ G ++V ++ +R +F GG
Sbjct: 95 EMDGKELNGRQIRVNLATERSSAPRSSFGGG 125
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 44.0 bits (99), Expect = 4e-05
Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 5/91 (5%)
Frame = +1
Query: 148 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACS 312
++++VGGL G L++ F +G++ V + GF F+ F A +A
Sbjct: 35 SKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIK 94
Query: 313 AMNGIEMLGATLKVEISRKRDGPRTGNFRGG 405
M+G E+ G ++V ++ +R +F GG
Sbjct: 95 EMDGKELNGRQIRVNLATERSSAPRSSFGGG 125
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 44.0 bits (99), Expect = 4e-05
Identities = 22/76 (28%), Positives = 43/76 (56%)
Frame = +1
Query: 139 SGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAM 318
S ++VGG+ + EDL + F ++G++ SV + + G F++F + + AEDA ++
Sbjct: 318 STNATIFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPVG-KGCGFVQFADRKSAEDAIESL 376
Query: 319 NGIEMLGATLKVEISR 366
NG + T+++ R
Sbjct: 377 NGTVIGKNTVRLSWGR 392
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 44.0 bits (99), Expect = 4e-05
Identities = 28/94 (29%), Positives = 48/94 (51%), Gaps = 8/94 (8%)
Frame = +1
Query: 148 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACS 312
T + V L ++EDL + F+++G + +++ + P GF F++F + +A DA
Sbjct: 36 TSLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKH 95
Query: 313 AMNGIEMLGATLKV---EISRKRDGPRTGNFRGG 405
M+G +LG L V E +RK+ RGG
Sbjct: 96 HMDGYLLLGRELTVVFAEENRKKPTEMRARERGG 129
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 43.6 bits (98), Expect = 5e-05
Identities = 29/91 (31%), Positives = 49/91 (53%), Gaps = 9/91 (9%)
Frame = +1
Query: 109 LVNTNHTIMSSGGT---RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GF 264
L +N T + G ++YVG L + + L + F+ +G + V + L+P GF
Sbjct: 249 LAQSNSTTVGGTGPADRKLYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGF 308
Query: 265 AFIEFENLQEAEDACSAMNG-IEMLGATLKV 354
FI+F L+ ++ A A+NG +E+ G T+KV
Sbjct: 309 GFIQFVQLEHSKAAQIALNGKLEIAGRTIKV 339
Score = 37.1 bits (82), Expect = 0.005
Identities = 15/45 (33%), Positives = 28/45 (62%)
Frame = +1
Query: 187 KEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMN 321
++D+ E KYG +N ++V N GF ++ F++++ A A AM+
Sbjct: 458 RDDVADECSKYGPVNHIYVDKNSAGFVYLRFQSVEAAAAAQRAMH 502
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 43.6 bits (98), Expect = 5e-05
Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 5/85 (5%)
Frame = +1
Query: 151 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSA 315
RVYVG L + LE+ F ++GK+ V + GF F+ ++ E +A SA
Sbjct: 245 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISA 304
Query: 316 MNGIEMLGATLKVEISRKRDGPRTG 390
++G + G ++V ++ +R PR G
Sbjct: 305 LDGQNLEGRAIRVNVAEERP-PRRG 328
Score = 30.7 bits (66), Expect = 0.39
Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 5/79 (6%)
Frame = +1
Query: 151 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACSA 315
+++VG L + + L F++ G + V N GF F+ ++ EAE A
Sbjct: 151 KLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEK 210
Query: 316 MNGIEMLGATLKVEISRKR 372
N ++ G L V + R
Sbjct: 211 FNRYDLNGRLLTVNKAAPR 229
>At4g18120.1 68417.m02694 RNA recognition motif (RRM)-containing
protein Mei2-like protein, Arabidopsis thaliana,
gb:D86122
Length = 785
Score = 43.6 bits (98), Expect = 5e-05
Identities = 25/74 (33%), Positives = 38/74 (51%)
Frame = +1
Query: 145 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNG 324
GT V V L + DLE F YG++ + N F+EF +++ A+ A A+N
Sbjct: 222 GTLV-VFNLAPSVSNRDLENIFGVYGEIKEIRETPNKRHHKFVEFFDVRSADAALKALNR 280
Query: 325 IEMLGATLKVEISR 366
E+ G +K+E SR
Sbjct: 281 TEIAGKRIKLEHSR 294
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 43.6 bits (98), Expect = 5e-05
Identities = 25/89 (28%), Positives = 48/89 (53%), Gaps = 7/89 (7%)
Frame = +1
Query: 136 SSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAE 300
+S +++++GGL + ++ L+ F +G++ V +A + GF F++F +A
Sbjct: 37 ASPSSKLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDAL 96
Query: 301 DACSAMNGIEMLGATLKVE--ISRKRDGP 381
A AM+G +LG L++ + R R GP
Sbjct: 97 SAKDAMDGKGLLGRPLRISFALERVRGGP 125
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 43.6 bits (98), Expect = 5e-05
Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 6/85 (7%)
Frame = +1
Query: 136 SSGG-TRVYVGGLVEGIKKEDLEREFDKYGKL---NSVW--VALNPPGFAFIEFENLQEA 297
SSG T++YV GL ++ L F+++G L N V VA P GFAF+ +E +EA
Sbjct: 72 SSGPKTKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEA 131
Query: 298 EDACSAMNGIEMLGATLKVEISRKR 372
A M+G + G + VE ++ R
Sbjct: 132 MKAIQGMHGKFLDGRVIFVEEAKTR 156
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 43.2 bits (97), Expect = 7e-05
Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 5/93 (5%)
Frame = +1
Query: 145 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL-----NPPGFAFIEFENLQEAEDAC 309
G+R++VGGL + DLER F ++G + + L GF FI F + + +++
Sbjct: 6 GSRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESI 65
Query: 310 SAMNGIEMLGATLKVEISRKRDGPRTGNFRGGR 408
M+G + + V + + G G G R
Sbjct: 66 REMHGRDFGDRVISVNRAEPKLGRDDGESHGSR 98
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 43.2 bits (97), Expect = 7e-05
Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 5/84 (5%)
Frame = +1
Query: 136 SSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAE 300
+ G RVYVG L G+ LE F + GK+ V + GF F+ +++ QE +
Sbjct: 200 AGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQ 259
Query: 301 DACSAMNGIEMLGATLKVEISRKR 372
+A +++G ++ G ++V + R
Sbjct: 260 NAIKSLDGADLDGRQIRVSEAEAR 283
Score = 35.1 bits (77), Expect = 0.018
Identities = 25/95 (26%), Positives = 38/95 (40%), Gaps = 5/95 (5%)
Frame = +1
Query: 139 SGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAED 303
S +++VG L + L + F+ G + V V + GF F+ ++ E E
Sbjct: 88 SADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEA 147
Query: 304 ACSAMNGIEMLGATLKVEISRKRDGPRTGNFRGGR 408
A NG E+ G L+V G RG R
Sbjct: 148 AAQQFNGYELDGRPLRVNAGPPPPKREDGFSRGPR 182
>At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing
protein low similarity to glycine-rich RNA-binding
protein [Euphorbia esula] GI:2645699; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 337
Score = 42.7 bits (96), Expect = 9e-05
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Frame = +1
Query: 145 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWV----ALNPPGFAFIEFENLQEAEDACS 312
G VYVGGL I +E + R F YG + +V + ++ + F+ F N + A+DA
Sbjct: 6 GNSVYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSVRGKCYGFVTFSNRRSADDAIE 65
Query: 313 AMNGIEMLGATLKVEISRKRDG 378
M+G + G ++V R G
Sbjct: 66 DMDGKSIGGRAVRVNDVTTRGG 87
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 42.7 bits (96), Expect = 9e-05
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Frame = +1
Query: 133 MSSGGTRVYVGGLVEGIKKEDLEREFDKYG-----KLNSVWVALNPPGFAFIEFENLQEA 297
MS R +VGGL EDL+R F ++G K+ + + GF F+ F++ +
Sbjct: 1 MSEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAM 60
Query: 298 EDACSAMNGIEMLGATLKVEISRKR 372
DA MNG E+ G + V ++ R
Sbjct: 61 RDAIEEMNGKELDGRVITVNEAQSR 85
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 42.3 bits (95), Expect = 1e-04
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 5/79 (6%)
Frame = +1
Query: 151 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSA 315
R+YVG L + LER F ++GK+ V + GF F++ N E A +A
Sbjct: 208 RIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAA 267
Query: 316 MNGIEMLGATLKVEISRKR 372
++G + G +KV ++ +R
Sbjct: 268 LDGQNLEGRAIKVNVAEER 286
Score = 31.1 bits (67), Expect = 0.30
Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 5/79 (6%)
Frame = +1
Query: 151 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACSA 315
+++VG L + + L F++ G + V N GF F+ ++EAE A
Sbjct: 114 KLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEK 173
Query: 316 MNGIEMLGATLKVEISRKR 372
N E+ G L V + R
Sbjct: 174 FNSFEVNGRRLTVNRAAPR 192
>At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing
protein Mei2-like protein - Arabidopsis thaliana,
EMBL:D86122
Length = 907
Score = 42.3 bits (95), Expect = 1e-04
Identities = 23/73 (31%), Positives = 40/73 (54%)
Frame = +1
Query: 136 SSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSA 315
SS G ++V L I E+L F YG++ V ++ +IEF ++++A+ A
Sbjct: 292 SSEGA-LWVNNLDSSISNEELHGIFSSYGEIREVRRTMHENSQVYIEFFDVRKAKVALQG 350
Query: 316 MNGIEMLGATLKV 354
+NG+E+ G LK+
Sbjct: 351 LNGLEVAGRQLKL 363
>At4g35785.2 68417.m05083 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 141
Score = 42.3 bits (95), Expect = 1e-04
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Frame = +1
Query: 145 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDAC 309
GT +YV GL + +DLE F K GK+ S ++ + P GFAF+ +L++AE
Sbjct: 71 GTTLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCI 130
Query: 310 SAMN 321
+N
Sbjct: 131 KYLN 134
>At4g35785.1 68417.m05082 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 140
Score = 42.3 bits (95), Expect = 1e-04
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Frame = +1
Query: 145 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDAC 309
GT +YV GL + +DLE F K GK+ S ++ + P GFAF+ +L++AE
Sbjct: 70 GTTLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCI 129
Query: 310 SAMN 321
+N
Sbjct: 130 KYLN 133
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 42.3 bits (95), Expect = 1e-04
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Frame = +1
Query: 148 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG----FAFIEFENLQEAEDACSA 315
T VYV L E ++L+ F +YG ++S V + G F F+ FEN ++A A A
Sbjct: 225 TNVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEA 284
Query: 316 MNG 324
+NG
Sbjct: 285 LNG 287
Score = 35.9 bits (79), Expect = 0.010
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Frame = +1
Query: 145 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFA----FIEFENLQEAEDACS 312
G +YV L + + E L F ++G + S V +P G + F+ F EA +
Sbjct: 327 GLNLYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLN 386
Query: 313 AMNGIEMLGATLKVEISRKRDGPR 384
MNG + G L V ++++++ R
Sbjct: 387 EMNGKMVGGKPLYVALAQRKEERR 410
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 42.3 bits (95), Expect = 1e-04
Identities = 30/98 (30%), Positives = 46/98 (46%), Gaps = 7/98 (7%)
Frame = +1
Query: 133 MSSGGT--RVYVGGLVEGIKKEDLEREFDKYG-----KLNSVWVALNPPGFAFIEFENLQ 291
M+SG R +VGGL LE F +YG K+ + GF F+ F++ +
Sbjct: 1 MASGDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEK 60
Query: 292 EAEDACSAMNGIEMLGATLKVEISRKRDGPRTGNFRGG 405
+DA MNG ++ G ++ V ++ R G RGG
Sbjct: 61 AMKDAIEGMNGQDLDGRSITVNEAQSRGSGGGGGHRGG 98
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 42.3 bits (95), Expect = 1e-04
Identities = 30/98 (30%), Positives = 46/98 (46%), Gaps = 7/98 (7%)
Frame = +1
Query: 133 MSSGGT--RVYVGGLVEGIKKEDLEREFDKYG-----KLNSVWVALNPPGFAFIEFENLQ 291
M+SG R +VGGL LE F +YG K+ + GF F+ F++ +
Sbjct: 1 MASGDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEK 60
Query: 292 EAEDACSAMNGIEMLGATLKVEISRKRDGPRTGNFRGG 405
+DA MNG ++ G ++ V ++ R G RGG
Sbjct: 61 AMKDAIEGMNGQDLDGRSITVNEAQSRGSGGGGGHRGG 98
>At5g58130.1 68418.m07273 RNA recognition motif (RRM)-containing
protein
Length = 748
Score = 41.9 bits (94), Expect = 2e-04
Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
Frame = +1
Query: 136 SSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSV-WVALNPPGFAFIEF--ENLQEAEDA 306
S GG R++VGGL E + ++DL + F G +++V +V FA+I+F +
Sbjct: 6 SGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKL 65
Query: 307 CSAMNGIEMLGATLKVEISRK 369
S NG G L++E +++
Sbjct: 66 FSTYNGCVWKGGRLRLEKAKE 86
>At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 222
Score = 41.9 bits (94), Expect = 2e-04
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Frame = +1
Query: 133 MSSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG-----FAFIEFENLQEA 297
+ + T +Y+G + G + ++E F ++G + V VA N F FI+FE+ + A
Sbjct: 55 LQNKATVLYIGRIPHGFYETEIEAFFSQFGTVKRVRVARNKKTGKSKHFGFIQFEDPEVA 114
Query: 298 EDACSAMNGIEMLGATLKVEI 360
E A AMN ++ LKV +
Sbjct: 115 EIAAGAMNDYLLMEHMLKVHV 135
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 41.9 bits (94), Expect = 2e-04
Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 5/82 (6%)
Frame = +1
Query: 151 RVYVGGLVEGIKKEDLEREF-DKYGKLNSVWV----ALNPPGFAFIEFENLQEAEDACSA 315
+VY G L + + L+ F D+ G L + + GF FI FE+ + + A +
Sbjct: 220 KVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALAT 279
Query: 316 MNGIEMLGATLKVEISRKRDGP 381
MNG+E+ G L++ ++ +R+ P
Sbjct: 280 MNGVEVEGRALRLNLASEREKP 301
>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
PF00076 RNA recognition motif
Length = 636
Score = 41.9 bits (94), Expect = 2e-04
Identities = 27/94 (28%), Positives = 52/94 (55%), Gaps = 5/94 (5%)
Frame = +1
Query: 127 TIMSSGGTR-VYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL----NPPGFAFIEFENLQ 291
T + GG++ ++ G L I + D+E F + G++ V ++ + G+ IEF + +
Sbjct: 376 TNQTQGGSKTLFAGNLSYQIARSDIENFFKEAGEVVDVRLSSFDDGSFKGYGHIEFASPE 435
Query: 292 EAEDACSAMNGIEMLGATLKVEISRKRDGPRTGN 393
EA+ A MNG +LG ++++++ +R PR N
Sbjct: 436 EAQKALE-MNGKLLLGRDVRLDLANERGTPRNSN 468
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 41.9 bits (94), Expect = 2e-04
Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Frame = +1
Query: 148 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG----FAFIEFENLQEAEDACSA 315
T VYV LVE DL+R F ++G++ S V + G F F+ FE + A A
Sbjct: 119 TNVYVKNLVETATDADLKRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAIEK 178
Query: 316 MNGI 327
MNG+
Sbjct: 179 MNGV 182
Score = 36.3 bits (80), Expect = 0.008
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Frame = +1
Query: 145 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFA----FIEFENLQEAEDACS 312
G +YV L + + LE F ++G + S V ++ G + F+EF +EA A
Sbjct: 222 GMNLYVKNLDDSVDNTKLEELFSEFGTITSCKVMVHSNGISKGVGFVEFSTSEEASKAML 281
Query: 313 AMNGIEMLG 339
MNG +M+G
Sbjct: 282 KMNG-KMVG 289
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 41.5 bits (93), Expect = 2e-04
Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 5/73 (6%)
Frame = +1
Query: 151 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDACSA 315
+VYVG L + + KE LE F + GK+ S V+ P GF F+ F + ++ E A A
Sbjct: 178 KVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVA 237
Query: 316 MNGIEMLGATLKV 354
+N + G ++V
Sbjct: 238 LNNSLLEGQKIRV 250
Score = 35.1 bits (77), Expect = 0.018
Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
Frame = +1
Query: 136 SSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG-----FAFIEFENLQEAE 300
S RVY+G + + E L + +++G + V V + F F +++++A
Sbjct: 72 SEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDAN 131
Query: 301 DACSAMNGIEMLGATLKVEISRK 369
+NG + G +KV I+ K
Sbjct: 132 AVVEKLNGNTVEGREIKVNITEK 154
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 41.5 bits (93), Expect = 2e-04
Identities = 25/82 (30%), Positives = 45/82 (54%), Gaps = 5/82 (6%)
Frame = +1
Query: 145 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG----FAFIEFENLQEAEDACS 312
G+ +Y+ L + + E L+ F +YG + S V +N G F F+ + N +EA A
Sbjct: 327 GSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMK 386
Query: 313 AMNGIEMLG-ATLKVEISRKRD 375
MNG +M+G L V ++++++
Sbjct: 387 EMNG-KMIGRKPLYVALAQRKE 407
Score = 40.7 bits (91), Expect = 4e-04
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Frame = +1
Query: 148 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG----FAFIEFENLQEAEDACSA 315
T VYV L + I ++L++ F KYG ++S V + G F F+ F + + A A
Sbjct: 225 TNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEK 284
Query: 316 MNGIEMLGATLKVEISRKR 372
MNGI + L V ++K+
Sbjct: 285 MNGISLGEDVLYVGRAQKK 303
Score = 34.3 bits (75), Expect = 0.032
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Frame = +1
Query: 109 LVNTNHTIMSSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIE 276
L N + + SG V++ L I + L F +G + S VA++ G+ F++
Sbjct: 119 LSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYGFVQ 178
Query: 277 FENLQEAEDACSAMNGI 327
FE + A+ A +NG+
Sbjct: 179 FEKEETAQAAIDKLNGM 195
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 41.1 bits (92), Expect = 3e-04
Identities = 20/80 (25%), Positives = 43/80 (53%)
Frame = +1
Query: 148 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGI 327
T ++VG + + + ++DL+ F ++G+L V + F+++ N AE A S +NG
Sbjct: 278 TTIFVGAVDQSVTEDDLKSVFGQFGELVHVKIPAG-KRCGFVQYANRACAEQALSVLNGT 336
Query: 328 EMLGATLKVEISRKRDGPRT 387
++ G ++++ R +T
Sbjct: 337 QLGGQSIRLSWGRSPSNKQT 356
>At5g65260.1 68418.m08209 polyadenylate-binding protein family
protein / PABP family protein low similarity to
poly(A)-binding protein II [Drosophila melanogaster]
GI:6007612; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain
Length = 220
Score = 40.7 bits (91), Expect = 4e-04
Identities = 25/89 (28%), Positives = 47/89 (52%), Gaps = 4/89 (4%)
Frame = +1
Query: 154 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACSAMN 321
V+VG + E++++ F G ++ V + + P GFA++EF ++ ++A +N
Sbjct: 94 VFVGNVDYACTPEEVQQHFQTCGTVHRVTILTDKFGQPKGFAYVEFVEVEAVQEALQ-LN 152
Query: 322 GIEMLGATLKVEISRKRDGPRTGNFRGGR 408
E+ G LKV + ++ + P FRG R
Sbjct: 153 ESELHGRQLKV-LQKRTNVPGLKQFRGRR 180
>At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 674
Score = 40.7 bits (91), Expect = 4e-04
Identities = 22/86 (25%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Frame = +1
Query: 112 VNTNHTIMSSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIE 276
++T + + ++V + G K+ L R F+K+G++ ++ +P G A+IE
Sbjct: 504 LSTTRPLEDASSRTIFVANVHFGATKDSLSRHFNKFGEVLKAFIVTDPATGQPSGSAYIE 563
Query: 277 FENLQEAEDACSAMNGIEMLGATLKV 354
F + AE+A S ++G + LK+
Sbjct: 564 FTRKEAAENALS-LDGTSFMSRILKI 588
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 40.7 bits (91), Expect = 4e-04
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Frame = +1
Query: 148 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACSA 315
T VYV L E + E+L + F ++G S + + GF F+ FEN +A A A
Sbjct: 224 TNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDA 283
Query: 316 MNG 324
+NG
Sbjct: 284 LNG 286
Score = 39.5 bits (88), Expect = 8e-04
Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 4/83 (4%)
Frame = +1
Query: 139 SGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFA----FIEFENLQEAEDA 306
S G+ +YV L E + + L F +G + S V +P G + F+ F +EA A
Sbjct: 324 SQGSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDPSGVSRGSGFVAFSTPEEATRA 383
Query: 307 CSAMNGIEMLGATLKVEISRKRD 375
+ MNG ++ L V ++++++
Sbjct: 384 ITEMNGKMIVTKPLYVALAQRKE 406
>At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative
similar to glycine-rich RNA-binding protein from
{Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum
sativum]; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 155
Score = 40.7 bits (91), Expect = 4e-04
Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 7/93 (7%)
Frame = +1
Query: 148 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACS 312
++++VGGL E L+ F +GK+ V L+ GF F+ +++++ A +A
Sbjct: 36 SKIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQ 95
Query: 313 AMNGIEMLGATLKVEISRKRDGPRTGNF--RGG 405
AM E+ G + V + G G F RGG
Sbjct: 96 AMQNKELDGRIIGVHPADSGGGGGGGGFARRGG 128
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 40.3 bits (90), Expect = 5e-04
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Frame = +1
Query: 148 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACSA 315
T VYV L+E + + L F +YG ++SV V + GF F+ F N + A+ A +
Sbjct: 202 TNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGMGRSRGFGFVNFCNPENAKKAMES 261
Query: 316 MNGIEMLGATLKVEISRKRDGPR 384
+ G+++ L V + K+D R
Sbjct: 262 LCGLQLGSKKLFVGKALKKDERR 284
Score = 35.9 bits (79), Expect = 0.010
Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Frame = +1
Query: 139 SGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL---NPPGFAFIEFENLQEAEDAC 309
+G +YV L I LER F +G + S V GF F++F+ Q A A
Sbjct: 109 TGFANLYVKNLDSSITSSCLERMFCPFGSILSCKVVEENGQSKGFGFVQFDTEQSAVSAR 168
Query: 310 SAMNGIEMLGATLKV 354
SA++G + G L V
Sbjct: 169 SALHGSMVYGKKLFV 183
Score = 35.9 bits (79), Expect = 0.010
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Frame = +1
Query: 148 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP----PGFAFIEFENLQEAEDACSA 315
+ +YV L E + + L F YG++ S V + GF F+ F N +E++ A
Sbjct: 304 SNLYVKNLSESMNETRLREIFGCYGQIVSAKVMCHENGRSKGFGFVCFSNCEESKQAKRY 363
Query: 316 MNGIEMLGATLKVEISRKRD 375
+NG + G + V ++ +++
Sbjct: 364 LNGFLVDGKPIVVRVAERKE 383
>At5g51120.1 68418.m06339 polyadenylate-binding protein, putative /
PABP, putative contains similarity to poly(A)-binding
protein II [Mus musculus] GI:2351846; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 227
Score = 39.9 bits (89), Expect = 6e-04
Identities = 23/87 (26%), Positives = 46/87 (52%), Gaps = 4/87 (4%)
Frame = +1
Query: 154 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACSAMN 321
+YVG + E++++ F G +N V + + P GFA++EF ++ +++ +N
Sbjct: 105 IYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVEAVQNSL-ILN 163
Query: 322 GIEMLGATLKVEISRKRDGPRTGNFRG 402
E+ G +KV +++ + P FRG
Sbjct: 164 ESELHGRQIKVS-AKRTNVPGMRQFRG 189
>At5g10350.2 68418.m01201 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 202
Score = 39.9 bits (89), Expect = 6e-04
Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 4/89 (4%)
Frame = +1
Query: 154 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACSAMN 321
VYVG + E+++ F G +N V + ++ P GFA++EF ++ ++A +N
Sbjct: 91 VYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEFVEVEAVQEALQ-LN 149
Query: 322 GIEMLGATLKVEISRKRDGPRTGNFRGGR 408
E+ G LKV ++ + P + GR
Sbjct: 150 ESELHGRQLKVS-PKRTNVPGMKQYHPGR 177
>At5g10350.1 68418.m01200 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 217
Score = 39.9 bits (89), Expect = 6e-04
Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 4/89 (4%)
Frame = +1
Query: 154 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACSAMN 321
VYVG + E+++ F G +N V + ++ P GFA++EF ++ ++A +N
Sbjct: 91 VYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEFVEVEAVQEALQ-LN 149
Query: 322 GIEMLGATLKVEISRKRDGPRTGNFRGGR 408
E+ G LKV ++ + P + GR
Sbjct: 150 ESELHGRQLKVS-PKRTNVPGMKQYHPGR 177
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 39.5 bits (88), Expect = 8e-04
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Frame = +1
Query: 142 GGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL-----NPPGFAFIEFENLQEAEDA 306
G R++VGGL + + + +G L + N G+AF +++L + A
Sbjct: 357 GPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIA 416
Query: 307 CSAMNGIEMLGATLKV 354
C+A+NGI+M TL V
Sbjct: 417 CAALNGIKMGDKTLTV 432
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 39.5 bits (88), Expect = 8e-04
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Frame = +1
Query: 142 GGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL-----NPPGFAFIEFENLQEAEDA 306
G R++VGGL + + + +G L + N G+AF +++L + A
Sbjct: 357 GPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIA 416
Query: 307 CSAMNGIEMLGATLKV 354
C+A+NGI+M TL V
Sbjct: 417 CAALNGIKMGDKTLTV 432
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 39.5 bits (88), Expect = 8e-04
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Frame = +1
Query: 142 GGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL-----NPPGFAFIEFENLQEAEDA 306
G R++VGGL + + + +G L + N G+AF +++L + A
Sbjct: 357 GPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIA 416
Query: 307 CSAMNGIEMLGATLKV 354
C+A+NGI+M TL V
Sbjct: 417 CAALNGIKMGDKTLTV 432
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 39.5 bits (88), Expect = 8e-04
Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 5/73 (6%)
Frame = +1
Query: 154 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDACSAM 318
VYVGG+ + + DL F +YG++ V + + GFAF+ +E+ + A +
Sbjct: 38 VYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDNL 97
Query: 319 NGIEMLGATLKVE 357
NG +LG T+KV+
Sbjct: 98 NGALVLGRTIKVD 110
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 39.5 bits (88), Expect = 8e-04
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Frame = +1
Query: 154 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDACSAM 318
++VG L +G +EDL++ F G++ V + NP G AF+ F +++A+ A +
Sbjct: 216 IFVGSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTKKSKGSAFLRFATVEQAKRAVKEL 275
Query: 319 NGIEMLGATLKVEISRKRDGPRTGN 393
+ G V S+ D GN
Sbjct: 276 KSPMINGKKCGVTASQDNDTLFVGN 300
>At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing
protein
Length = 830
Score = 39.5 bits (88), Expect = 8e-04
Identities = 19/62 (30%), Positives = 36/62 (58%)
Frame = +1
Query: 181 IKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGIEMLGATLKVEI 360
+ ++L + F YG++ + N FIE+ ++++AE A A+N E+ G +K+E+
Sbjct: 281 VSNDELLQLFGAYGEIREIRETPNRRFHRFIEYYDVRDAETALKALNRSEIGGKCIKLEL 340
Query: 361 SR 366
SR
Sbjct: 341 SR 342
>At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing
protein
Length = 843
Score = 39.5 bits (88), Expect = 8e-04
Identities = 19/62 (30%), Positives = 36/62 (58%)
Frame = +1
Query: 181 IKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGIEMLGATLKVEI 360
+ ++L + F YG++ + N FIE+ ++++AE A A+N E+ G +K+E+
Sbjct: 294 VSNDELLQLFGAYGEIREIRETPNRRFHRFIEYYDVRDAETALKALNRSEIGGKCIKLEL 353
Query: 361 SR 366
SR
Sbjct: 354 SR 355
>At1g07350.2 68414.m00784 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 129
Score = 39.5 bits (88), Expect = 8e-04
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Frame = +1
Query: 145 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDAC 309
G +YV GL + + DLE F K GK+ V + L+P GF FI +++ +A
Sbjct: 44 GNSLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCI 103
Query: 310 SAMNGIEMLGATLKVE 357
+++ + G + VE
Sbjct: 104 RSLDHSVLQGRVITVE 119
>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
protein similar to SP|Q14011 Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) {Homo
sapiens}; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 157
Score = 39.1 bits (87), Expect = 0.001
Identities = 24/80 (30%), Positives = 38/80 (47%)
Frame = +1
Query: 148 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGI 327
T V GL + L + F + +L P GF FI FE+ +A+ A A+NG
Sbjct: 71 TCVSNSGLSAYTTDQSLRQLFAPFARLIKDQQTQRPKGFGFITFESEDDAQKALKALNGK 130
Query: 328 EMLGATLKVEISRKRDGPRT 387
+ G + VE +++ + P T
Sbjct: 131 IVNGRLIFVETAKEVEAPTT 150
>At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing
protein similar to GI:6650523 from [Arabidopsis
thaliana]
Length = 800
Score = 39.1 bits (87), Expect = 0.001
Identities = 25/74 (33%), Positives = 38/74 (51%)
Frame = +1
Query: 145 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNG 324
GT V V L I +DL F +G++ + + F+EF +++ AE A A+N
Sbjct: 253 GTLV-VFNLDPSISNDDLHGIFGAHGEIKEIRETPHKRHHKFVEFYDVRGAEAALKALNR 311
Query: 325 IEMLGATLKVEISR 366
E+ G +KVE SR
Sbjct: 312 CEIAGKRIKVEPSR 325
Score = 33.1 bits (72), Expect = 0.074
Identities = 15/84 (17%), Positives = 37/84 (44%)
Frame = +1
Query: 154 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGIEM 333
++V + ++ +L F++YG + +++ GF I + +++ A A ++ +
Sbjct: 170 LFVRNINSNVEDSELTALFEQYGDIRTLYTTCKHRGFVMISYYDIRSARMAMRSLQNKPL 229
Query: 334 LGATLKVEISRKRDGPRTGNFRGG 405
L + S +D P + G
Sbjct: 230 RRRKLDIHFSIPKDNPSEKDMNQG 253
>At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing
protein similar to GI:6650523 from [Arabidopsis
thaliana]
Length = 800
Score = 39.1 bits (87), Expect = 0.001
Identities = 25/74 (33%), Positives = 38/74 (51%)
Frame = +1
Query: 145 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNG 324
GT V V L I +DL F +G++ + + F+EF +++ AE A A+N
Sbjct: 253 GTLV-VFNLDPSISNDDLHGIFGAHGEIKEIRETPHKRHHKFVEFYDVRGAEAALKALNR 311
Query: 325 IEMLGATLKVEISR 366
E+ G +KVE SR
Sbjct: 312 CEIAGKRIKVEPSR 325
Score = 33.1 bits (72), Expect = 0.074
Identities = 15/84 (17%), Positives = 37/84 (44%)
Frame = +1
Query: 154 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGIEM 333
++V + ++ +L F++YG + +++ GF I + +++ A A ++ +
Sbjct: 170 LFVRNINSNVEDSELTALFEQYGDIRTLYTTCKHRGFVMISYYDIRSARMAMRSLQNKPL 229
Query: 334 LGATLKVEISRKRDGPRTGNFRGG 405
L + S +D P + G
Sbjct: 230 RRRKLDIHFSIPKDNPSEKDMNQG 253
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 38.7 bits (86), Expect = 0.001
Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Frame = +1
Query: 148 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACS 312
TRVYVG L + L F YG + V + GF F+ + + EAE A S
Sbjct: 3 TRVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVS 62
Query: 313 AMNGIEMLGATLKVEI 360
M+G E+ G + V++
Sbjct: 63 GMDGKELNGRRVSVKL 78
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 38.7 bits (86), Expect = 0.001
Identities = 24/98 (24%), Positives = 48/98 (48%), Gaps = 5/98 (5%)
Frame = +1
Query: 127 TIMSSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQ 291
+I ++++VGG+ + L F KYG++ + ++ GFAF+ F + +
Sbjct: 27 SIRCMSSSKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTE 86
Query: 292 EAEDACSAMNGIEMLGATLKVEISRKRDGPRTGNFRGG 405
EA +A ++G ++ G ++V + +R G GG
Sbjct: 87 EASNAMQ-LDGQDLHGRRIRVNYATERGSGFGGRGFGG 123
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 38.3 bits (85), Expect = 0.002
Identities = 22/88 (25%), Positives = 45/88 (51%), Gaps = 5/88 (5%)
Frame = +1
Query: 145 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWV-----ALNPPGFAFIEFENLQEAEDAC 309
G+ V++GGL + +EDL ++ G++ V + + + G+AF+ F+ A+ A
Sbjct: 115 GSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAI 174
Query: 310 SAMNGIEMLGATLKVEISRKRDGPRTGN 393
++ E G T++ +S ++ GN
Sbjct: 175 EELHSKEFKGKTIRCSLSETKNRLFIGN 202
>At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}, RNA Binding Protein 47
[Nicotiana plumbaginifolia] GI:9663769; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 481
Score = 38.3 bits (85), Expect = 0.002
Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Frame = +1
Query: 154 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAM-NGIE 330
+YVGGL I ++D+ +F +G++ S+ + L AF+ + + + AE A + N +
Sbjct: 230 LYVGGLNSRILEQDIRDQFYAHGEIESIRI-LADKACAFVTYTSREGAEKAAQELSNRLV 288
Query: 331 MLGATLKVEISRKRDGPRTGNFRGG 405
+ G LK+ R + N +GG
Sbjct: 289 INGQRLKLTWGRPKPDQDGANQQGG 313
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 38.3 bits (85), Expect = 0.002
Identities = 20/79 (25%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Frame = +1
Query: 145 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG-----FAFIEFENLQEAEDAC 309
G +++ + + ++L F +GK+ S V ++ F FI +++ A++A
Sbjct: 338 GANLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAI 397
Query: 310 SAMNGIEMLGATLKVEISR 366
+ MNG ++ G LKV++ R
Sbjct: 398 NTMNGCQLSGKKLKVQLKR 416
Score = 30.3 bits (65), Expect = 0.52
Identities = 14/62 (22%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Frame = +1
Query: 151 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWV----ALNPPGFAFIEFENLQEAEDACSAM 318
+++VG L + + + +++ F +YG + + + G F+++E+ ++A A A+
Sbjct: 110 KLFVGMLPKNVSETEVQSLFSEYGTIKDLQILRGSLQTSKGCLFLKYESKEQAVAAMEAL 169
Query: 319 NG 324
NG
Sbjct: 170 NG 171
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 38.3 bits (85), Expect = 0.002
Identities = 20/79 (25%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Frame = +1
Query: 145 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG-----FAFIEFENLQEAEDAC 309
G +++ + + ++L F +GK+ S V ++ F FI +++ A++A
Sbjct: 329 GANLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAI 388
Query: 310 SAMNGIEMLGATLKVEISR 366
+ MNG ++ G LKV++ R
Sbjct: 389 NTMNGCQLSGKKLKVQLKR 407
Score = 30.3 bits (65), Expect = 0.52
Identities = 14/62 (22%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Frame = +1
Query: 151 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWV----ALNPPGFAFIEFENLQEAEDACSAM 318
+++VG L + + + +++ F +YG + + + G F+++E+ ++A A A+
Sbjct: 101 KLFVGMLPKNVSETEVQSLFSEYGTIKDLQILRGSLQTSKGCLFLKYESKEQAVAAMEAL 160
Query: 319 NG 324
NG
Sbjct: 161 NG 162
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 37.9 bits (84), Expect = 0.003
Identities = 29/96 (30%), Positives = 42/96 (43%), Gaps = 5/96 (5%)
Frame = +1
Query: 133 MSSGGTRVYVGGLVEGIKKEDLEREFDKYG-----KLNSVWVALNPPGFAFIEFENLQEA 297
MS R +VGGL EDL+R F ++G K+ + + GF F+ F++ +
Sbjct: 1 MSEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAM 60
Query: 298 EDACSAMNGIEMLGATLKVEISRKRDGPRTGNFRGG 405
DA MNG G +R+G G GG
Sbjct: 61 RDAIEEMNGSGGGGGGRGYGGGGRREGGGYGGGDGG 96
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 37.9 bits (84), Expect = 0.003
Identities = 21/79 (26%), Positives = 43/79 (54%), Gaps = 4/79 (5%)
Frame = +1
Query: 148 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP----GFAFIEFENLQEAEDACSA 315
T +Y+ L + ++ L +F ++GK+ S+ +A + G+AF+ F+N ++A A
Sbjct: 201 TNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAET 260
Query: 316 MNGIEMLGATLKVEISRKR 372
+NG + L V ++K+
Sbjct: 261 VNGTKFGSKCLYVGRAQKK 279
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 37.1 bits (82), Expect = 0.005
Identities = 19/80 (23%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Frame = +1
Query: 148 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACS 312
+++++GGL ++ L F K G++ + ++ GF F+ F + EA+ A
Sbjct: 34 SKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALM 93
Query: 313 AMNGIEMLGATLKVEISRKR 372
NG ++ G T+ V+ ++ +
Sbjct: 94 EFNGQQLNGRTIFVDYAKAK 113
>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
nearly identical to SC35-like splicing factor SCL30, 30
kD [Arabidopsis thaliana] GI:9843657;
Serine/arginine-rich protein/putative splicing factor,
Arabidopdis thaliana, EMBL:AF099940; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 37.1 bits (82), Expect = 0.005
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 8/71 (11%)
Frame = +1
Query: 184 KKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAMNGIEMLGATL 348
+ E+L F+++G + V++ + P GFAF+EF + +A +A +MN G +
Sbjct: 59 RPEELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRSMNRRSFAGREI 118
Query: 349 KVEI---SRKR 372
V + SRKR
Sbjct: 119 TVVVASESRKR 129
>At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
is the location of EST 197B1T7 , gb|AA597386
Length = 274
Score = 37.1 bits (82), Expect = 0.005
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Frame = +1
Query: 148 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDAC 309
T+V+VGGL + E L R FD+YG + V + G+ F+ F + + A AC
Sbjct: 24 TKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRAC 82
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 36.7 bits (81), Expect = 0.006
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Frame = +1
Query: 142 GGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL-----NPPGFAFIEFENLQEAEDA 306
G R++VGGL + + + +G L + N G+AF +++ + A
Sbjct: 373 GPDRIFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTDIA 432
Query: 307 CSAMNGIEMLGATLKV 354
C+A+NGI+M TL V
Sbjct: 433 CAALNGIKMGDKTLTV 448
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 36.3 bits (80), Expect = 0.008
Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 5/88 (5%)
Frame = +1
Query: 151 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSA 315
+++VGGL I +E+ + FD++G + V V + P GF FI F++ +A D
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDS-DDAVDRVLH 169
Query: 316 MNGIEMLGATLKVEISRKRDGPRTGNFR 399
E+ G ++V+ + ++ N R
Sbjct: 170 KTFHELNGKLVEVKRAVPKEISPVSNIR 197
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 36.3 bits (80), Expect = 0.008
Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 5/88 (5%)
Frame = +1
Query: 151 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSA 315
+++VGGL I +E+ + FD++G + V V + P GF FI F++ +A D
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDS-DDAVDRVLH 169
Query: 316 MNGIEMLGATLKVEISRKRDGPRTGNFR 399
E+ G ++V+ + ++ N R
Sbjct: 170 KTFHELNGKLVEVKRAVPKEISPVSNIR 197
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 36.3 bits (80), Expect = 0.008
Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 5/88 (5%)
Frame = +1
Query: 151 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSA 315
+++VGGL I +E+ + FD++G + V V + P GF FI F++ +A D
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDS-DDAVDRVLH 169
Query: 316 MNGIEMLGATLKVEISRKRDGPRTGNFR 399
E+ G ++V+ + ++ N R
Sbjct: 170 KTFHELNGKLVEVKRAVPKEISPVSNIR 197
>At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 427
Score = 36.3 bits (80), Expect = 0.008
Identities = 21/81 (25%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Frame = +1
Query: 154 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAM 318
++V L + ++REF+ YG + V + + P G+AFIE+ + ++ + A
Sbjct: 140 LFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEYMHTRDMKAAYKQA 199
Query: 319 NGIEMLGATLKVEISRKRDGP 381
+G ++ G + V++ R R P
Sbjct: 200 DGQKIDGRRVLVDVERGRTVP 220
>At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 169
Score = 35.9 bits (79), Expect = 0.010
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Frame = +1
Query: 121 NHTIMSSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFEN 285
+H + T++YVGGL +KE L F ++G++ V V + G+ F+ F++
Sbjct: 4 HHQNFDTTFTKIYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKD 63
Query: 286 LQEAEDACSAMN 321
+ A AC N
Sbjct: 64 AESATRACKDPN 75
>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
3G / eIF3g nearly identical to eukaryotic translation
initiation factor 3g [Arabidopsis thaliana] GI:12407751
Length = 294
Score = 35.9 bits (79), Expect = 0.010
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
Frame = +1
Query: 154 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACSAM 318
V V L E ++ DL F +G + V+VA++ GF F+ F + ++A+ A + +
Sbjct: 215 VRVTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAINKL 274
Query: 319 NGIEMLGATLKVEISRKR 372
NG L+VE + R
Sbjct: 275 NGYGYDNLILRVEWATPR 292
>At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing
protein
Length = 116
Score = 35.9 bits (79), Expect = 0.010
Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 8/97 (8%)
Frame = +1
Query: 139 SGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAED 303
S + ++V G+ +E L + F +YG++ V V ++ P GFA++ F + +EAE
Sbjct: 18 SFSSTLFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEK 77
Query: 304 ACSAMNGIEMLGATLKVEISR--KRDGPRT-GNFRGG 405
A +N + G + ++ ++ K + P T N GG
Sbjct: 78 ALLELNAQLVDGRVVILDTTKAAKHNPPDTKPNHAGG 114
>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein from {Daucus
carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 185
Score = 35.9 bits (79), Expect = 0.010
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 7/92 (7%)
Frame = +1
Query: 151 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSA 315
R +VGGL ++ +ER F+++G++ + ++ GF F+ F++ A
Sbjct: 45 RCFVGGLAWATDEQSIERCFNEFGEVFDSKIIIDRETGRSKGFRFVTFKDEDSMRTAIDR 104
Query: 316 MNGIEMLGATLKVEI--SRKRDGPRTGNFRGG 405
MNG E+ G + + S R G G GG
Sbjct: 105 MNGQELDGRNITAQARGSGTRGGMVGGYGSGG 136
>At5g02530.1 68418.m00187 RNA and export factor-binding protein,
putative BcDNA.LD24793, Drosophila melanogaster,
EMBL:AF172637
Length = 292
Score = 35.5 bits (78), Expect = 0.014
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Frame = +1
Query: 145 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACS 312
GT++Y+ L G+ ED++ F + G L + + G A + F +A A
Sbjct: 107 GTKLYISNLDYGVSNEDIKELFSEVGDLKRYGIHYDRSGRSKGTAEVVFSRRGDALAAVK 166
Query: 313 AMNGIEMLGATLKVEI 360
N +++ G +K+EI
Sbjct: 167 RYNNVQLDGKLMKIEI 182
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 35.5 bits (78), Expect = 0.014
Identities = 31/105 (29%), Positives = 52/105 (49%), Gaps = 11/105 (10%)
Frame = +1
Query: 124 HTIMSSGGT------RVYVGGLVEGIKKEDLEREFDKYGKLNSVWV----ALN-PPGFAF 270
+T SSGG +++VGGL + E+ + F+ YG + V + A N P GF F
Sbjct: 96 NTSRSSGGDAYNKTKKIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGF 155
Query: 271 IEFENLQEAEDACSAMNGIEMLGATLKVEISRKRDGPRTGNFRGG 405
+ F++ ++A D+ ++ G ++V KR P+ N GG
Sbjct: 156 VSFDS-EDAVDSVLHKTFHDLSGKQVEV----KRALPKDANPGGG 195
Score = 32.7 bits (71), Expect = 0.097
Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 7/99 (7%)
Frame = +1
Query: 133 MSSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEA 297
M S +++VGG+ ++ L F YG+++ V + P GF F+ F +
Sbjct: 1 MDSDQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVL 60
Query: 298 EDACSAMNGIEMLGATLKVEISRKRD--GPRTGNFRGGR 408
+ + I+ +K +SR+ RTGN R
Sbjct: 61 DRVLQEKHSIDTREVDVKRAMSREEQQVSGRTGNLNTSR 99
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 35.5 bits (78), Expect = 0.014
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 5/60 (8%)
Frame = +1
Query: 148 TRVYVGGLVEGIKKEDLEREFDKYGK-LNSVWVA----LNPPGFAFIEFENLQEAEDACS 312
T+V+VGGL + E L + F++YG+ L +V +A G+ F+ F + + A AC+
Sbjct: 24 TKVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRACA 83
>At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 177
Score = 35.5 bits (78), Expect = 0.014
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Frame = +1
Query: 154 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG-----FAFIEFENLQEAEDACSAM 318
+YVGGL + + + L F +G + V L+ F F+ F ++A A M
Sbjct: 15 LYVGGLADEVNESILHAAFIPFGDIKDVKTPLDQANQKHRSFGFVTFLEREDASAAMDNM 74
Query: 319 NGIEMLGATLKV 354
+G E+ G L V
Sbjct: 75 DGAELYGRVLTV 86
>At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing
protein Mei2-like protein, Arabidopsis thaliana,
EMBL:D86122
Length = 915
Score = 35.1 bits (77), Expect = 0.018
Identities = 17/65 (26%), Positives = 33/65 (50%)
Frame = +1
Query: 160 VGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGIEMLG 339
V L I ++L R YG++ + ++ +IEF +++ A A +NG+E+ G
Sbjct: 306 VNNLDSSISNQELNRLVKSYGEVKEIRRTMHDNSQIYIEFFDVRAAAAALGGLNGLEVAG 365
Query: 340 ATLKV 354
L++
Sbjct: 366 KKLQL 370
>At5g43960.2 68418.m05378 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 391
Score = 35.1 bits (77), Expect = 0.018
Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 6/90 (6%)
Frame = +1
Query: 154 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG------FAFIEFENLQEAEDACSA 315
VYV L I ++E EF +G + V L +AF+EFE++ E+A A
Sbjct: 259 VYVRNLPSDISASEIEEEFKNFGTIKPDGVFLRTRKDVMGVCYAFVEFEDMTSVENAIKA 318
Query: 316 MNGIEMLGATLKVEISRKRDGPRTGNFRGG 405
+ I + G + +E R G RGG
Sbjct: 319 -SPIYLGGRQVYIEERRPNPAGVRGARRGG 347
>At5g43960.1 68418.m05379 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 450
Score = 35.1 bits (77), Expect = 0.018
Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 6/90 (6%)
Frame = +1
Query: 154 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG------FAFIEFENLQEAEDACSA 315
VYV L I ++E EF +G + V L +AF+EFE++ E+A A
Sbjct: 318 VYVRNLPSDISASEIEEEFKNFGTIKPDGVFLRTRKDVMGVCYAFVEFEDMTSVENAIKA 377
Query: 316 MNGIEMLGATLKVEISRKRDGPRTGNFRGG 405
+ I + G + +E R G RGG
Sbjct: 378 -SPIYLGGRQVYIEERRPNPAGVRGARRGG 406
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 35.1 bits (77), Expect = 0.018
Identities = 26/92 (28%), Positives = 48/92 (52%), Gaps = 8/92 (8%)
Frame = +1
Query: 106 YLVNTNHTIMSSGGTR---VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPG 261
+L++ +H + GG R ++VGGL I + + + FD++G + V V + P G
Sbjct: 106 HLISPSHG-GNGGGARTKKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRG 164
Query: 262 FAFIEFENLQEAEDACSAMNGIEMLGATLKVE 357
F FI F++ +E+ D E+ G ++V+
Sbjct: 165 FGFITFDS-EESVDMVLHKTFHELNGKMVEVK 195
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 35.1 bits (77), Expect = 0.018
Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 6/92 (6%)
Frame = +1
Query: 148 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACS 312
T++++GGL G L F +G + V ++ GF F+ F + A A S
Sbjct: 35 TKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAIS 94
Query: 313 AMNGIEMLGATLKVEISRKR-DGPRTGNFRGG 405
M+G E+ G ++V + R PR GG
Sbjct: 95 EMDGKELNGRHIRVNPANDRPSAPRAYGGGGG 126
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 35.1 bits (77), Expect = 0.018
Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 6/92 (6%)
Frame = +1
Query: 148 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACS 312
T++++GGL G L F +G + V ++ GF F+ F + A A S
Sbjct: 35 TKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAIS 94
Query: 313 AMNGIEMLGATLKVEISRKR-DGPRTGNFRGG 405
M+G E+ G ++V + R PR GG
Sbjct: 95 EMDGKELNGRHIRVNPANDRPSAPRAYGGGGG 126
>At5g44200.1 68418.m05408 nuclear cap-binding protein, putative
similar to SP|P52298 20 kDa nuclear cap binding protein
(CBP20) (NCBP interacting protein 1) {Homo sapiens};
non-consensus AT donor splice site at exon 4, AC
acceptor splice site at exon 5; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 257
Score = 34.7 bits (76), Expect = 0.024
Identities = 23/92 (25%), Positives = 45/92 (48%), Gaps = 6/92 (6%)
Frame = +1
Query: 148 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACS 312
T VY+G + +E L F + G++ + + L+ P GF F+ F + ++ EDA
Sbjct: 34 TTVYIGNVSFYTTEEQLYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLFYSREDTEDAVK 93
Query: 313 AMNGIEMLGATLKVEIS-RKRDGPRTGNFRGG 405
++G + ++V+ ++G + G R G
Sbjct: 94 YISGTILDDRPIRVDFDWGFQEGRQWGRGRSG 125
>At5g59950.3 68418.m07518 RNA and export factor-binding protein,
putative
Length = 242
Score = 34.3 bits (75), Expect = 0.032
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Frame = +1
Query: 145 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACS 312
GT++Y+ L G+ ED++ F + G+L V + G A + + +A A
Sbjct: 85 GTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAAVK 144
Query: 313 AMNGIEMLGATLKVEI 360
N +++ G +K+EI
Sbjct: 145 KYNDVQLDGKPMKIEI 160
>At5g59950.2 68418.m07519 RNA and export factor-binding protein,
putative
Length = 178
Score = 34.3 bits (75), Expect = 0.032
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Frame = +1
Query: 145 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACS 312
GT++Y+ L G+ ED++ F + G+L V + G A + + +A A
Sbjct: 21 GTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAAVK 80
Query: 313 AMNGIEMLGATLKVEI 360
N +++ G +K+EI
Sbjct: 81 KYNDVQLDGKPMKIEI 96
>At5g59950.1 68418.m07517 RNA and export factor-binding protein,
putative
Length = 244
Score = 34.3 bits (75), Expect = 0.032
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Frame = +1
Query: 145 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACS 312
GT++Y+ L G+ ED++ F + G+L V + G A + + +A A
Sbjct: 87 GTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAAVK 146
Query: 313 AMNGIEMLGATLKVEI 360
N +++ G +K+EI
Sbjct: 147 KYNDVQLDGKPMKIEI 162
>At2g47310.1 68415.m05906 flowering time control protein-related /
FCA gamma-related
Length = 512
Score = 34.3 bits (75), Expect = 0.032
Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 6/89 (6%)
Frame = +1
Query: 151 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP----GFAFIEFENLQEAEDACSAM 318
++YV L + K ++ F +YG + +++AL+ G+AF++F + A A A+
Sbjct: 208 KLYVRCLNKQTTKMEVNEVFSRYGIIEDIYMALDDMKICRGYAFVQFSCKEMALAAIKAL 267
Query: 319 NGIEMLGATLKVEISRKRD--GPRTGNFR 399
NG+ + + + I R D PR G R
Sbjct: 268 NGLFTIRGSDQPLIVRFADPKKPRLGEQR 296
>At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing
protein low similarity to enhancer binding protein-1;
EBP1 [Entamoeba histolytica] GI:8163877, SP|P19682 28
kDa ribonucleoprotein, chloroplast precursor (28RNP)
{Nicotiana sylvestris}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 304
Score = 33.9 bits (74), Expect = 0.042
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Frame = +1
Query: 190 EDLEREFDKYGKLNSVWVALNPP----GFAFIEFENLQEAEDACSAMNGIEMLGATLKVE 357
ED+ F+KYG + + ++++ G FIE + +EA A ++ E G LKV+
Sbjct: 108 EDIRSLFEKYGSVIDIEMSMHKKERNRGLVFIEMASPEEAATALKSLESCEYEGRRLKVD 167
Query: 358 ISRKR 372
++ +
Sbjct: 168 YAKTK 172
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 33.9 bits (74), Expect = 0.042
Identities = 18/75 (24%), Positives = 42/75 (56%), Gaps = 5/75 (6%)
Frame = +1
Query: 151 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWV----ALNPPGFAFIEFENLQEAEDACSAM 318
+++VG L + + + +++ F KYG + + + G AF+++E ++A A ++
Sbjct: 107 KLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAMESI 166
Query: 319 NG-IEMLGATLKVEI 360
NG +M G+T+ + +
Sbjct: 167 NGKHKMEGSTVPLVV 181
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 33.9 bits (74), Expect = 0.042
Identities = 18/75 (24%), Positives = 42/75 (56%), Gaps = 5/75 (6%)
Frame = +1
Query: 151 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWV----ALNPPGFAFIEFENLQEAEDACSAM 318
+++VG L + + + +++ F KYG + + + G AF+++E ++A A ++
Sbjct: 107 KLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAMESI 166
Query: 319 NG-IEMLGATLKVEI 360
NG +M G+T+ + +
Sbjct: 167 NGKHKMEGSTVPLVV 181
Score = 30.7 bits (66), Expect = 0.39
Identities = 18/79 (22%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
Frame = +1
Query: 145 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG-----FAFIEFENLQEAEDAC 309
G +++ + ++L F +G + S V ++ F F+ +++ A++A
Sbjct: 348 GANLFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGFVSYDSQAAAQNAI 407
Query: 310 SAMNGIEMLGATLKVEISR 366
MNG + G LKV++ R
Sbjct: 408 DMMNGRHLGGKKLKVQLKR 426
>At5g37720.1 68418.m04541 RNA and export factor-binding protein,
putative transcriptional coactivator ALY, Mus musculus,
EMBL:MMU89876
Length = 288
Score = 33.5 bits (73), Expect = 0.056
Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Frame = +1
Query: 145 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACS 312
GTR++V L +G+ ED+ F + G++ + + P G A + + +A A
Sbjct: 92 GTRLHVTNLDQGVTNEDIRELFSEIGEVERYAIHYDKNGRPSGTAEVVYPRRSDAFQALK 151
Query: 313 AMNGIEMLGATLKVEI 360
N + + G +++EI
Sbjct: 152 KYNNVLLDGRPMRLEI 167
>At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 261
Score = 33.5 bits (73), Expect = 0.056
Identities = 31/110 (28%), Positives = 51/110 (46%), Gaps = 17/110 (15%)
Frame = +1
Query: 115 NTNHTIMSSGGTRVYVGGLVEGIKKEDLEREFDKYGK-LNSVWVA----LNPPGFAFIEF 279
N N + T+V+VGGL KE + F KYG L +V ++ G+ F+ F
Sbjct: 6 NVNGCFGDTKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTF 65
Query: 280 ENLQEA----EDACSAMNG------IEMLGATLKVE--ISRKRDGPRTGN 393
++ + A ED+ +NG + LG L+ ++ + GP+ GN
Sbjct: 66 KDAKAATRACEDSTPIINGRRANCNLASLGGRLRKSPTMTSPQQGPKNGN 115
>At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}; contains Pfam profile:
PF00076 RNA recognition motif (aka RRM, RBD, or RNP
domain)
Length = 483
Score = 33.5 bits (73), Expect = 0.056
Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Frame = +1
Query: 154 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAM-NGIE 330
+YVGGL + ++D+ +F +G++ S+ + L AF+ + + AE A + N +
Sbjct: 230 LYVGGLNSRVLEQDIRDQFYAHGEIESIRI-LAEKACAFVTYTTREGAEKAAEELSNRLV 288
Query: 331 MLGATLKVEISR 366
+ G LK+ R
Sbjct: 289 VNGQRLKLTWGR 300
>At1g66260.1 68414.m07522 RNA and export factor-binding protein,
putative similar to GI:7159943 from [Mus musculus] (RNA
6 (4), 638-650 (2000))
Length = 295
Score = 33.5 bits (73), Expect = 0.056
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Frame = +1
Query: 145 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACS 312
GT VY+ L +G+ ED+ + + G+L + + P G A + + +A A
Sbjct: 106 GTTVYITNLDQGVTNEDIRELYAEIGELKRYAIHYDKNGRPSGSAEVVYMRRSDAIQAMR 165
Query: 313 AMNGIEMLGATLKVEI 360
N + + G +K+EI
Sbjct: 166 KYNNVLLDGRPMKLEI 181
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 33.1 bits (72), Expect = 0.074
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Frame = +1
Query: 154 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAM 318
+++G L + + L F + G+L SV V N P G+ FIEF + AE
Sbjct: 26 LWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQTY 85
Query: 319 NGIEMLGATLKVEIS 363
NG +M G L ++
Sbjct: 86 NGTQMPGTELTFRLN 100
>At1g06960.2 68414.m00741 small nuclear ribonucleoprotein U2B,
putative / spliceosomal protein, putative non-consensus
splice donor GC at exon 4; similar to spliceosomal
protein (U2B) GI:169588 from [Solanum tuberosum]
Length = 228
Score = 33.1 bits (72), Expect = 0.074
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 7/80 (8%)
Frame = +1
Query: 154 VYVGGLVEGIKKEDLERE----FDKYGKLNSVWVALNPP---GFAFIEFENLQEAEDACS 312
+Y+ + E IKKE+L+R F ++G+L V VAL P G A++ F + A +A
Sbjct: 12 IYIKHINEKIKKEELKRSLYCLFSQFGRLLDV-VALKTPKLRGQAWVVFTEVTAASNAVR 70
Query: 313 AMNGIEMLGATLKVEISRKR 372
M ++++ ++ +
Sbjct: 71 QMQNFPFYDKPMRIQYAKSK 90
Score = 27.5 bits (58), Expect = 3.7
Identities = 12/46 (26%), Positives = 25/46 (54%)
Frame = +1
Query: 196 LEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGIEM 333
L+ F++Y + + PG AF+E+E+ ++ A A+ G ++
Sbjct: 170 LQLLFEQYPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQGFKI 215
>At1g06960.1 68414.m00740 small nuclear ribonucleoprotein U2B,
putative / spliceosomal protein, putative non-consensus
splice donor GC at exon 4; similar to spliceosomal
protein (U2B) GI:169588 from [Solanum tuberosum]
Length = 229
Score = 33.1 bits (72), Expect = 0.074
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 7/80 (8%)
Frame = +1
Query: 154 VYVGGLVEGIKKEDLERE----FDKYGKLNSVWVALNPP---GFAFIEFENLQEAEDACS 312
+Y+ + E IKKE+L+R F ++G+L V VAL P G A++ F + A +A
Sbjct: 12 IYIKHINEKIKKEELKRSLYCLFSQFGRLLDV-VALKTPKLRGQAWVVFTEVTAASNAVR 70
Query: 313 AMNGIEMLGATLKVEISRKR 372
M ++++ ++ +
Sbjct: 71 QMQNFPFYDKPMRIQYAKSK 90
Score = 27.5 bits (58), Expect = 3.7
Identities = 12/46 (26%), Positives = 25/46 (54%)
Frame = +1
Query: 196 LEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGIEM 333
L+ F++Y + + PG AF+E+E+ ++ A A+ G ++
Sbjct: 171 LQLLFEQYPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQGFKI 216
>At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing
protein similar to SP|P52298 20 kDa nuclear cap binding
protein (NCBP 20 kDa subunit) (CBP20) (NCBP interacting
protein 1) (NIP1) {Homo sapiens}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 124
Score = 32.7 bits (71), Expect = 0.097
Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Frame = +1
Query: 154 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN--PPGFAFIEFENLQEAEDACSAMNGI 327
+YV L I E++ F KYG + + + + G AF+ +E++ +A++A ++G
Sbjct: 21 LYVRNLPFNITSEEMYDIFGKYGAIRQIRIGCDKATKGTAFVVYEDIYDAKNAVDHLSGF 80
Query: 328 EMLGATLKV 354
+ L V
Sbjct: 81 NVANRYLIV 89
>At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
SP|P19684 33 kDa ribonucleoprotein, chloroplast
precursor {Nicotiana sylvestris}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 308
Score = 32.7 bits (71), Expect = 0.097
Identities = 12/35 (34%), Positives = 23/35 (65%)
Frame = +1
Query: 259 GFAFIEFENLQEAEDACSAMNGIEMLGATLKVEIS 363
G+ F+ F +EAE+A + +NG E++G + ++ S
Sbjct: 237 GYGFVSFATREEAENAITKLNGKEIMGRPITLKFS 271
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 32.7 bits (71), Expect = 0.097
Identities = 22/82 (26%), Positives = 42/82 (51%), Gaps = 5/82 (6%)
Frame = +1
Query: 124 HTIMSSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENL 288
H+ + VYVGGL + +E L F + G + +V+V + + FIE+ +
Sbjct: 17 HSAERNQDATVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSE 76
Query: 289 QEAEDACSAMNGIEMLGATLKV 354
++A+ A +N I++ G ++V
Sbjct: 77 EDADYAIKVLNMIKLHGKPIRV 98
Score = 30.3 bits (65), Expect = 0.52
Identities = 21/90 (23%), Positives = 41/90 (45%), Gaps = 8/90 (8%)
Frame = +1
Query: 145 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP------GFAFIEFENLQEAEDA 306
G +++G L + ++ L F +G + S + P GF FI +++ + ++ A
Sbjct: 111 GANLFIGNLDPDVDEKLLYDTFSAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEASDAA 170
Query: 307 CSAMNGIEMLGATLKVEISRKRD--GPRTG 390
+M G + + V + K+D G R G
Sbjct: 171 IESMTGQYLSNRQITVSYAYKKDTKGERHG 200
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 32.7 bits (71), Expect = 0.097
Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 5/79 (6%)
Frame = +1
Query: 148 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACS 312
T++Y G L + L + + V V N GFAF+ N+++
Sbjct: 85 TKLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNIIID 144
Query: 313 AMNGIEMLGATLKVEISRK 369
++G E LG LKV + K
Sbjct: 145 NLDGTEYLGRALKVNFADK 163
>At1g09230.1 68414.m01030 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 442
Score = 32.7 bits (71), Expect = 0.097
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Frame = +1
Query: 145 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP--GFAFIEFENLQEAEDACSAM 318
G + V L +GI + + R F +YG ++V AF++F+N A A +
Sbjct: 27 GVTLLVRHLPDGIPHDIVSRLFSQYGA-SAVRPCSGGKLRNAAFVDFKNEAFASQAHRQL 85
Query: 319 NGIEMLGATLKVEISRK 369
NG+ LG L+V+ + K
Sbjct: 86 NGLRFLGKVLQVQRANK 102
>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
protein low similarity to RNA-binding protein RGP-3
[Nicotiana sylvestris] GI:1009363; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 156
Score = 32.3 bits (70), Expect = 0.13
Identities = 19/81 (23%), Positives = 38/81 (46%), Gaps = 5/81 (6%)
Frame = +1
Query: 148 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACS 312
T ++V GL + E L F ++G++ V + GF F+ + L+++ +
Sbjct: 56 TNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGIA 115
Query: 313 AMNGIEMLGATLKVEISRKRD 375
M+G + G + E +R R+
Sbjct: 116 GMDGKFLDGWVIFAEYARPRE 136
>At5g16260.1 68418.m01899 RNA recognition motif (RRM)-containing
protein similar to Tat-SF1 - Homo sapiens, GI:1667611;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 519
Score = 32.3 bits (70), Expect = 0.13
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = +1
Query: 187 KEDLEREFDKYGKLNSVWVALN-PPGFAFIEFENLQEAEDACSAMNG 324
+ED++ E K+G +SV V + P G + F++ ++A+ AMNG
Sbjct: 430 EEDVKEESLKHGPFDSVKVCEHHPQGVVLVRFKDRRDAQKCIEAMNG 476
>At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 243
Score = 31.9 bits (69), Expect = 0.17
Identities = 17/49 (34%), Positives = 28/49 (57%)
Frame = +1
Query: 262 FAFIEFENLQEAEDACSAMNGIEMLGATLKVEISRKRDGPRTGNFRGGR 408
+AF+EF + ++A+DA ++G + G+ + VE S R PR G R
Sbjct: 5 YAFVEFSDPRDADDARYYLDGRDFDGSRITVEAS--RGAPRGSRDNGSR 51
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 31.9 bits (69), Expect = 0.17
Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 5/77 (6%)
Frame = +1
Query: 151 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSA 315
+++VGG+ + +++L+ F KYG + V + GF F+ F++ + ++ S
Sbjct: 110 KIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSK 169
Query: 316 MNGIEMLGATLKVEISR 366
N I+M A +VEI +
Sbjct: 170 GNMIDM--ADTQVEIKK 184
Score = 26.2 bits (55), Expect = 8.5
Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Frame = +1
Query: 151 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEF 279
++++GGL + + F KYG++ + + P GF FI F
Sbjct: 20 KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITF 67
>At2g30260.1 68415.m03684 small nuclear ribonucleoprotein U2B,
putative / spliceosomal protein, putative similar to
spliceosomal protein [Solanum tuberosum] GI:169589
Length = 232
Score = 31.9 bits (69), Expect = 0.17
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Frame = +1
Query: 154 VYVGGLVEGIKKEDLERE----FDKYGKLNSVWVALNPP---GFAFIEFENLQEAEDACS 312
+Y+ L E IKKE+L+R F ++G++ V VAL P G A++ F + A A
Sbjct: 12 IYIQNLNERIKKEELKRSLYCLFSQFGRILDV-VALKTPKLRGQAWVTFSEVTAAGHAVR 70
Query: 313 AMNGIEMLGATLKVEISRKR 372
M ++++ ++ +
Sbjct: 71 QMQNFPFYDKPMRLQYAKAK 90
Score = 26.2 bits (55), Expect = 8.5
Identities = 12/46 (26%), Positives = 24/46 (52%)
Frame = +1
Query: 196 LEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGIEM 333
L+ F++Y + + PG AF+E+E+ +A A + G ++
Sbjct: 174 LQLLFEQYPGFKEIRMIDAKPGIAFVEYEDDVQASIAMQPLQGFKI 219
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 31.9 bits (69), Expect = 0.17
Identities = 18/71 (25%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Frame = +1
Query: 154 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAM 318
+++ L + KE++++ F +G++ S+ + L+ P G AF++F+ + A SA
Sbjct: 563 LFIRNLPFDVTKEEVKQRFTVFGEVESLSLVLHKVTKRPEGTAFVKFKTADASVAAISAA 622
Query: 319 NGIEMLGATLK 351
+ +G LK
Sbjct: 623 DTASGVGVLLK 633
Score = 27.1 bits (57), Expect = 4.8
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Frame = +1
Query: 184 KKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAMNG 324
K D++ F G + V++ N P GFAF++F ++A +A NG
Sbjct: 343 KPSDIKVVFSAVGFVWDVFIPKNFETGLPKGFAFVKFTCKKDAANAIKKFNG 394
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 31.9 bits (69), Expect = 0.17
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Frame = +1
Query: 151 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL-----NPPGFAFIEFEN 285
+++VGG+ + +E L++ F +YG + VA P GF F+ F N
Sbjct: 7 KLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFAN 56
>At4g32720.1 68417.m04657 RNA recognition motif (RRM)-containing
protein RNA-binding protein LAH1, Saccharomyces
cerevisiae, PIR2:B48600; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 433
Score = 31.5 bits (68), Expect = 0.22
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Frame = +1
Query: 181 IKKEDLEREFDKYGKLNSVWVALNP------PGFAFIEFENLQEAEDACSAMNGIEMLGA 342
+K+ED+E F +YGK+NSV + + G A +EF ++A++ + G
Sbjct: 127 VKREDVESFFSQYGKVNSVRMPRHVAESRIFSGVALVEFPTEEDAQNVMK--QNLVFAGQ 184
Query: 343 TLKVEISRKRDGPR 384
L+++ ++ D R
Sbjct: 185 ELELKPKKEFDNER 198
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 31.5 bits (68), Expect = 0.22
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Frame = +1
Query: 148 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP----PGFAFIEFENLQEAEDACSA 315
T+++V + K +L + F +G++ S+ + G+AF+EF QEA +A A
Sbjct: 669 TKLHVKNIAFEATKRELRQLFSPFGQIKSMRLPKKNIGQYAGYAFVEFVTKQEALNAKKA 728
Query: 316 MNGIEMLGATLKVE 357
+ G L +E
Sbjct: 729 LASTHFYGRHLVLE 742
>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
{Rattus norvegicus} SP|Q61413,{Xenopus laevis};
SP|O93235; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 102
Score = 31.5 bits (68), Expect = 0.22
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = +1
Query: 253 PPGFAFIEFENLQEAEDACSAMNGIEMLGATLKVEISRKRDGPRTG 390
P GF FI F++ +A A +++G + G + VE+++ + R G
Sbjct: 47 PKGFGFITFDSEDDARKALKSLDGKIVDGRLIFVEVAKNAEEVRAG 92
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 31.5 bits (68), Expect = 0.22
Identities = 20/92 (21%), Positives = 46/92 (50%), Gaps = 8/92 (8%)
Frame = +1
Query: 151 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSA 315
+++VGGL + ++ F+ YG ++ + ++ P GF F+ F++ +++ D
Sbjct: 111 KIFVGGLPPALTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDS-EDSVDLVLH 169
Query: 316 MNGIEMLGATLKVEISRKRD---GPRTGNFRG 402
++ G ++V+ + +D G +G RG
Sbjct: 170 KTFHDLNGKQVEVKRALPKDANPGIASGGGRG 201
>At3g23900.1 68416.m03003 RNA recognition motif (RRM)-containing
protein
Length = 987
Score = 31.1 bits (67), Expect = 0.30
Identities = 21/69 (30%), Positives = 33/69 (47%)
Frame = +1
Query: 160 VGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGIEMLG 339
V L + E L + F G + + + A+IE+ N +EA A A+N E+ G
Sbjct: 355 VSNLSPSLTTEQLRQLFSFCGTVVDCSIT-DSKHIAYIEYSNSEEAT-AALALNNTEVFG 412
Query: 340 ATLKVEISR 366
L VEI++
Sbjct: 413 RALNVEIAK 421
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 31.1 bits (67), Expect = 0.30
Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 5/82 (6%)
Frame = +1
Query: 94 IK*SYLVNTNHTIMSSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP----- 258
IK ++ T +S ++VG L + L + F + + V +
Sbjct: 126 IKVNWAYATGQREDTSSHFNIFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSR 185
Query: 259 GFAFIEFENLQEAEDACSAMNG 324
GF F+ F N Q+A+ A + MNG
Sbjct: 186 GFGFVSFRNQQDAQTAINEMNG 207
>At2g15530.2 68415.m01778 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 704
Score = 31.1 bits (67), Expect = 0.30
Identities = 22/72 (30%), Positives = 28/72 (38%)
Frame = -3
Query: 404 PPLKLPVRGPSRFLEISTLRVAPNISMPFMALHASSASCKFSNSMNAKPGGFNATHTEFN 225
PP P PSR E+S + P+I P S + P G + + E
Sbjct: 459 PPQNAPPHNPSRTSELSPWSLFPSIESP---------SASHGGPLPLLPAGPSVSSNEVT 509
Query: 224 FPYLSNSRSRSS 189
P SNSRS S
Sbjct: 510 MPSSSNSRSHRS 521
>At2g15530.1 68415.m01777 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 704
Score = 31.1 bits (67), Expect = 0.30
Identities = 22/72 (30%), Positives = 28/72 (38%)
Frame = -3
Query: 404 PPLKLPVRGPSRFLEISTLRVAPNISMPFMALHASSASCKFSNSMNAKPGGFNATHTEFN 225
PP P PSR E+S + P+I P S + P G + + E
Sbjct: 459 PPQNAPPHNPSRTSELSPWSLFPSIESP---------SASHGGPLPLLPAGPSVSSNEVT 509
Query: 224 FPYLSNSRSRSS 189
P SNSRS S
Sbjct: 510 MPSSSNSRSHRS 521
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 31.1 bits (67), Expect = 0.30
Identities = 18/71 (25%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Frame = +1
Query: 154 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAM 318
++V L + + L+ F +G++ V +A++ P G ++EF+ +AE A M
Sbjct: 100 LHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYM 159
Query: 319 NGIEMLGATLK 351
+G ++ G +K
Sbjct: 160 DGAQIDGKVVK 170
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 31.1 bits (67), Expect = 0.30
Identities = 18/71 (25%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Frame = +1
Query: 154 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAM 318
++V L + + L+ F +G++ V +A++ P G ++EF+ +AE A M
Sbjct: 100 LHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYM 159
Query: 319 NGIEMLGATLK 351
+G ++ G +K
Sbjct: 160 DGAQIDGKVVK 170
>At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 100
Score = 30.7 bits (66), Expect = 0.39
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Frame = +1
Query: 148 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACS 312
T++YV GL + E L F+++G++ V + GF F+ F ++ A AC
Sbjct: 9 TKIYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATRACE 68
Query: 313 AMN 321
N
Sbjct: 69 NPN 71
>At5g06000.1 68418.m00665 eukaryotic translation initiation factor
3G, putative / eIF3g, putative similar to eukaryotic
translation initiation factor 3g [Arabidopsis thaliana]
GI:12407751; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 276
Score = 30.7 bits (66), Expect = 0.39
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Frame = +1
Query: 154 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACSAM 318
V V L E + DL F +G + VA++ GF F+ F + ++A+ A + +
Sbjct: 176 VRVTNLSEDTRGPDLMELFRPFGAVTRCHVAIDQKTSMSRGFGFVSFVSREDAQRAINKL 235
Query: 319 NGIEMLGATLKVEIS 363
NG L+VE S
Sbjct: 236 NGYGYDNLILRVEWS 250
>At3g26120.1 68416.m03257 RNA-binding protein, putative similar to
GB:AAC39463 from [Zea mays], PF00076 RNA recognition
motif (2 copies)
Length = 615
Score = 30.7 bits (66), Expect = 0.39
Identities = 21/71 (29%), Positives = 32/71 (45%)
Frame = +1
Query: 196 LEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGIEMLGATLKVEISRKRD 375
L + F YG + + F+EF ++++A A MNG E+ G + +E S R
Sbjct: 229 LRQIFQVYGPIKELRETPYKKHQRFVEFYDVRDAARAFDRMNGKEIGGKQVVIEFS--RP 286
Query: 376 GPRTGNFRGGR 408
G FR R
Sbjct: 287 GGIKNRFRSSR 297
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 30.7 bits (66), Expect = 0.39
Identities = 18/79 (22%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Frame = +1
Query: 151 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDACSA 315
++++ GL ++ L F+ +G+L V + ++ G+AF+E+ + A A
Sbjct: 283 KLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTALKE 342
Query: 316 MNGIEMLGATLKVEISRKR 372
MNG + G + V++++ +
Sbjct: 343 MNGKIINGWMIVVDVAKTK 361
>At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 249
Score = 30.7 bits (66), Expect = 0.39
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = +1
Query: 262 FAFIEFENLQEAEDACSAMNGIEMLGATLKVEISRKRD-GPRTGNFRG 402
+AF+EF + ++A+DA ++G + G+ + VE SR G R + RG
Sbjct: 5 YAFVEFGDPRDADDARHYLDGRDFDGSRITVEFSRGAPRGSRDFDSRG 52
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 30.3 bits (65), Expect = 0.52
Identities = 13/57 (22%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Frame = +1
Query: 148 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWV-----ALNPPGFAFIEFENLQEAED 303
TR++V + + + D F++YG++ +++ + G FI F + ED
Sbjct: 91 TRIFVARIPSSVSESDFRSHFERYGEITDLYMPKDYNSKQHRGIGFITFSSADSVED 147
Score = 30.3 bits (65), Expect = 0.52
Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 7/89 (7%)
Frame = +1
Query: 145 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDAC 309
G +++VG L + +DL F ++G + ++ +P GF F+ F A+
Sbjct: 239 GNKIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTFAENGVADRV- 297
Query: 310 SAMNGIEMLGATLKVEISRKRD--GPRTG 390
A E+ G + ++ + D GP G
Sbjct: 298 -ARRSHEICGQEVAIDSATPLDEAGPSAG 325
>At3g61130.1 68416.m06841 glycosyl transferase family 8 protein
contains Pfam profile: PF01501 glycosyl transferase
family 8
Length = 673
Score = 30.3 bits (65), Expect = 0.52
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = +1
Query: 217 YGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGI-EMLGATLKVEISRKRDGPRTGN 393
+G +N +W LNPPG A I EN+ E + S+ + L + E K D P +G+
Sbjct: 405 FGAMN-MWFLLNPPGKATIHVENVDEFKWLNSSYCPVLRQLESAAMREYYFKADHPTSGS 463
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 30.3 bits (65), Expect = 0.52
Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Frame = +1
Query: 148 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACS 312
T+V+VGGL +++ R FD++G++ + + G+ F+ F + A A +
Sbjct: 17 TKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAVA 76
Query: 313 AMNGI 327
N +
Sbjct: 77 DPNPV 81
>At5g03580.1 68418.m00316 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
[Triticum aestivum] GI:1737492; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 29.9 bits (64), Expect = 0.69
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Frame = +1
Query: 148 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACSA 315
T +Y+ L + +E L F +GK+ +A + GFAFIEFE+ A A
Sbjct: 17 TSLYIANLDAQVSEEMLFLMFSDFGKVIRSVLAKDFRGESRGFAFIEFESADSAGRAMLH 76
Query: 316 MNG 324
M+G
Sbjct: 77 MDG 79
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 29.9 bits (64), Expect = 0.69
Identities = 17/66 (25%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Frame = +1
Query: 151 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSA 315
+++VGG+ + +++L+ F KYG + V + GF F+ F++ + ++ S
Sbjct: 110 KIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSK 169
Query: 316 MNGIEM 333
N I+M
Sbjct: 170 GNMIDM 175
Score = 26.2 bits (55), Expect = 8.5
Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Frame = +1
Query: 151 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEF 279
++++GGL + + F KYG++ + + P GF FI F
Sbjct: 20 KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITF 67
>At3g49390.1 68416.m05399 RNA-binding protein, putative RNA-binding
protein RBP37, Arabidopsis thaliana, PIR:T04196
Length = 353
Score = 29.5 bits (63), Expect = 0.91
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 3/84 (3%)
Frame = +1
Query: 154 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG---FAFIEFENLQEAEDACSAMNG 324
VYV + + + +E+L F G++ V +P FAFIEF N +E A +M+G
Sbjct: 171 VYVSDIDQQVTEENLAGVFINCGQVVDCRVCGDPNSVLRFAFIEFTN-EEGARAALSMSG 229
Query: 325 IEMLGATLKVEISRKRDGPRTGNF 396
+ LKV S+ P F
Sbjct: 230 TVLGFYPLKVLPSKTAIAPVNPTF 253
>At3g27700.2 68416.m03459 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 908
Score = 29.5 bits (63), Expect = 0.91
Identities = 14/51 (27%), Positives = 28/51 (54%)
Frame = +1
Query: 175 EGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGI 327
E +++ + F K+GK+ + + +N AF++F +EAE A A + +
Sbjct: 448 ESNRRDLILAHFQKFGKVIDIHIPVNSER-AFVQFSKREEAESALRAPDAV 497
>At3g27700.1 68416.m03458 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 908
Score = 29.5 bits (63), Expect = 0.91
Identities = 14/51 (27%), Positives = 28/51 (54%)
Frame = +1
Query: 175 EGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGI 327
E +++ + F K+GK+ + + +N AF++F +EAE A A + +
Sbjct: 448 ESNRRDLILAHFQKFGKVIDIHIPVNSER-AFVQFSKREEAESALRAPDAV 497
>At2g42240.1 68415.m05228 RNA recognition motif (RRM)-containing
protein similar to RNA-binding protein (Hermes) from
{Gallus gallus} SP|Q9W6I1, {Xenopus laevis} SP|Q9YGP5,
{Mus musculus} SP|Q9WVB0; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 124
Score = 29.5 bits (63), Expect = 0.91
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
Frame = +1
Query: 154 VYVGGLVEGIKKED---LEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNG 324
++V GL E +K + L REF Y + + + + FAF F +LQ A A+NG
Sbjct: 37 LFVAGLPEDVKPREIYNLFREFPGY-ETSHLRSSDGAKPFAFAVFSDLQSAVAVMHALNG 95
Query: 325 IEM-LGATLKVEISRKRDGPRTGNFRGGR 408
+ L + I + P++ R G+
Sbjct: 96 MVFDLEKHSTLHIDLAKSNPKSKRSRTGK 124
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 29.5 bits (63), Expect = 0.91
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +1
Query: 259 GFAFIEFENLQEAEDACSAMNG 324
GF F+ F N Q+A+ A + MNG
Sbjct: 194 GFGFVSFRNQQDAQTAINEMNG 215
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 29.5 bits (63), Expect = 0.91
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +1
Query: 259 GFAFIEFENLQEAEDACSAMNG 324
GF F+ F N Q+A+ A + MNG
Sbjct: 190 GFGFVSFRNQQDAQTAINEMNG 211
>At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 501
Score = 29.1 bits (62), Expect = 1.2
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +1
Query: 154 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP 255
V+VG L +KK+ + +EF K+G++ SV + P
Sbjct: 173 VFVGNLPLKVKKKVILKEFSKFGEVESVRIRSVP 206
>At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat
Length = 952
Score = 29.1 bits (62), Expect = 1.2
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 6/84 (7%)
Frame = +1
Query: 151 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWV------ALNPPGFAFIEFENLQEAEDACS 312
+++VG L IKK + E F ++G + +V + GF FI + + A A
Sbjct: 166 KIFVGNLPTWIKKPEFEEFFRQFGPIENVILIKGHHEVEKNAGFGFIIYAAEKSAMKAVE 225
Query: 313 AMNGIEMLGATLKVEISRKRDGPR 384
+G+E G L V++ DG R
Sbjct: 226 -FDGVEFHGRILTVKLD---DGKR 245
>At4g28170.1 68417.m04039 hypothetical protein
Length = 135
Score = 29.1 bits (62), Expect = 1.2
Identities = 17/49 (34%), Positives = 23/49 (46%)
Frame = -3
Query: 287 KFSNSMNAKPGGFNATHTEFNFPYLSNSRSRSSFLIPSTSPPTYTRVPP 141
+F +S+NA P G AT L R F+ P+ SPP + PP
Sbjct: 56 RFESSVNAVPFGLVATGVLIAIFLLIAFFERFMFVKPTPSPPLDQKFPP 104
>At2g33440.1 68415.m04099 splicing factor family protein similar to
Splicing factor U2AF 65 kDa subunit (U2 snRNP auxiliary
factor large subunit) {Homo sapiens} SP|P26368, {Mus
musculus} SP|P26369; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 247
Score = 29.1 bits (62), Expect = 1.2
Identities = 17/75 (22%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Frame = +1
Query: 133 MSSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSV-WVALNPPG--FAFIEFENLQEAED 303
+ ++++GG + I E L +G L + +V+ N AF+E+ +
Sbjct: 35 VEDSSNKIFIGGFSKAISSEMLMEIVSVFGPLKAYRFVSNNDLNQRCAFLEYTDGSVTLK 94
Query: 304 ACSAMNGIEMLGATL 348
AC+ +NG+ + G+ +
Sbjct: 95 ACAGLNGMRLGGSVI 109
>At1g43190.1 68414.m04977 polypyrimidine tract-binding protein,
putative / heterogeneous nuclear ribonucleoprotein,
putative similar to Polypyrimidine tract-binding protein
1 (PTB) (Heterogeneous nuclear ribonucleoprotein I)
(hnRNP I) from {Rattus norvegicus} SP|Q00438, {Homo
sapiens} SP|P26599, [Homo sapiens] GI:35770; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 432
Score = 29.1 bits (62), Expect = 1.2
Identities = 16/64 (25%), Positives = 30/64 (46%)
Frame = +1
Query: 175 EGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGIEMLGATLKV 354
+ I ++ L F YG + + + N P A ++ + +AE A + G + G L+V
Sbjct: 255 DSIDEDKLFNLFSLYGNIVRIKLLRNKPDHALVQMGDGFQAELAVHFLKGAMLFGKRLEV 314
Query: 355 EISR 366
S+
Sbjct: 315 NFSK 318
>At5g27640.1 68418.m03311 eukaryotic translation initiation factor 3
subunit 9 / eIF-3 eta / eIF3b (TIF3B1) nearly identical
to SP|Q9C5Z1 Eukaryotic translation initiation factor 3
subunit 9 (eIF-3 eta) (eIF3 p110) (eIF3b) {Arabidopsis
thaliana}
Length = 712
Score = 28.7 bits (61), Expect = 1.6
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 5/42 (11%)
Frame = +1
Query: 223 KLNSVWVALNPP-----GFAFIEFENLQEAEDACSAMNGIEM 333
K N +W+ ++P G+ FIEF QEA++A +G ++
Sbjct: 89 KENGLWMPVDPDTKMTLGYCFIEFNTPQEAQNAKEKSHGYKL 130
>At1g69250.1 68414.m07936 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif (a.k.a.
RRM, RBD, or RNP domain)
Length = 427
Score = 28.7 bits (61), Expect = 1.6
Identities = 26/98 (26%), Positives = 38/98 (38%), Gaps = 11/98 (11%)
Frame = +1
Query: 145 GTRVYVGGLVEGIKKEDLEREFDKYG--KLNSVWVA-----LNPPGFAFIEFENLQEAED 303
GT ++V L L F +G K N + V NP F FI FE + +
Sbjct: 279 GTSIFVANLPLNAMPPQLFELFKDFGPIKENGIQVRSSRGNANPVCFGFISFETVASVQS 338
Query: 304 ACSAMNGIEMLGATLKVEISRKR---DGPR-TGNFRGG 405
A + A K+ + K DG + +G +GG
Sbjct: 339 VLQAAKNTPFMLADRKLRVKEKEVDYDGSKPSGKTKGG 376
>At1g67770.1 68414.m07733 RNA-binding protein, putative similar to
terminal ear1 gb|AAC39463.1
Length = 527
Score = 28.7 bits (61), Expect = 1.6
Identities = 16/62 (25%), Positives = 28/62 (45%)
Frame = +1
Query: 181 IKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGIEMLGATLKVEI 360
+ L F YG++ V F+EF ++++A A MNG + G + ++
Sbjct: 194 VSSSTLRHIFQVYGEVKQVRETPCKREQRFVEFFDVRDAAKALRVMNGKVISGKPMVIQF 253
Query: 361 SR 366
SR
Sbjct: 254 SR 255
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 28.7 bits (61), Expect = 1.6
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
Frame = +1
Query: 130 IMSSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG-----FAFIEFENLQE 294
+M +VYVG L + + L F K+G + S V + FAF+ F + +E
Sbjct: 206 LMYESQHKVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEE 265
Query: 295 AEDACSAMNGIEMLGATLKV 354
DA + NG + G + V
Sbjct: 266 -RDAALSFNGTQYEGRRIIV 284
>At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 173
Score = 28.3 bits (60), Expect = 2.1
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +1
Query: 253 PPGFAFIEFENLQEAEDACSAMNG-IEMLGATLKVEIS 363
P GFAF E+E + A+ A +G + + TLK IS
Sbjct: 47 PKGFAFAEYETEEIADYAVKLFSGLVSLYNRTLKFAIS 84
>At1g79880.3 68414.m09332 La domain-containing protein contains Pfam
profile PF05383: La domain; similar to putative protein
GB:CAA18589 [Arabidopsis thaliana]
Length = 357
Score = 28.3 bits (60), Expect = 2.1
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
Frame = +1
Query: 181 IKKEDLEREFDKYGKLNSVWVALNPP------GFAFIEFENLQEAED 303
IK ED+ F +Y K+NSV + N G A +EF + Q+ +D
Sbjct: 72 IKMEDVSSFFSQYAKVNSVRLPPNIADKRRFCGTALVEFSSEQDTQD 118
>At1g79880.2 68414.m09331 La domain-containing protein contains Pfam
profile PF05383: La domain; similar to putative protein
GB:CAA18589 [Arabidopsis thaliana]
Length = 345
Score = 28.3 bits (60), Expect = 2.1
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
Frame = +1
Query: 181 IKKEDLEREFDKYGKLNSVWVALNPP------GFAFIEFENLQEAED 303
IK ED+ F +Y K+NSV + N G A +EF + Q+ +D
Sbjct: 72 IKMEDVSSFFSQYAKVNSVRLPPNIADKRRFCGTALVEFSSEQDTQD 118
>At1g79880.1 68414.m09333 La domain-containing protein contains Pfam
profile PF05383: La domain; similar to putative protein
GB:CAA18589 [Arabidopsis thaliana]
Length = 399
Score = 28.3 bits (60), Expect = 2.1
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
Frame = +1
Query: 181 IKKEDLEREFDKYGKLNSVWVALNPP------GFAFIEFENLQEAED 303
IK ED+ F +Y K+NSV + N G A +EF + Q+ +D
Sbjct: 126 IKMEDVSSFFSQYAKVNSVRLPPNIADKRRFCGTALVEFSSEQDTQD 172
>At1g05510.1 68414.m00563 expressed protein
Length = 241
Score = 28.3 bits (60), Expect = 2.1
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +1
Query: 145 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVW 240
G +++ G+ E I+++DLE+ YGK+ W
Sbjct: 121 GGFLFMPGVPEAIQRQDLEKVAKTYGKVYHFW 152
>At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing
protein
Length = 710
Score = 27.9 bits (59), Expect = 2.8
Identities = 25/94 (26%), Positives = 36/94 (38%), Gaps = 5/94 (5%)
Frame = +1
Query: 142 GGTRVYVGGLVEGIKKEDLEREFDKYGKLNSV-----WVALNPPGFAFIEFENLQEAEDA 306
GG ++VG L +LE E KYG + V + G+ +EF + A
Sbjct: 232 GGAFLFVGDLHWWTTDAELEAELCKYGAVKEVKFFDEKASGKSKGYCQVEFYDPVAASAC 291
Query: 307 CSAMNGIEMLGATLKVEISRKRDGPRTGNFRGGR 408
A+NG G VE + R G + R
Sbjct: 292 KDALNGYPFNGRPCVVEYASPYSVKRMGEAQVNR 325
>At5g07060.1 68418.m00799 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 363
Score = 27.9 bits (59), Expect = 2.8
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +1
Query: 154 VYVGGLVEGIKKEDLEREFDKYGKLNSVWV 243
+YVGGL I ++D+ F YG++ S+ V
Sbjct: 227 LYVGGLNSRIFEQDIHDHFYAYGEMESIRV 256
>At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing
protein low similarity to heterogeneous nuclear
ribonucleoprotein G [Mus musculus] GI:5579009; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 152
Score = 27.9 bits (59), Expect = 2.8
Identities = 21/83 (25%), Positives = 42/83 (50%), Gaps = 7/83 (8%)
Frame = +1
Query: 148 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACS 312
+++ V L ++ L+REF +G++ V + + G+AFI+F + +A A
Sbjct: 40 SKIMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFLAIE 99
Query: 313 AMNGIEMLGATLKVEISR--KRD 375
M+ G + ++I++ KRD
Sbjct: 100 TMDRRMYNGRMIYIDIAKPGKRD 122
>At3g14450.1 68416.m01831 RNA-binding protein, putative contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) (2 copies)
Length = 327
Score = 27.9 bits (59), Expect = 2.8
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Frame = +1
Query: 154 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG---FAFIEFENLQEAEDACSAMNG 324
VYV + + + +E L F G++ + +P FAF+EF + Q A +A S G
Sbjct: 143 VYVSDIDQSVTEEGLAGLFSNCGQVVDCRICGDPHSVLRFAFVEFADDQGAHEALSL--G 200
Query: 325 IEMLG 339
MLG
Sbjct: 201 GTMLG 205
>At1g57600.1 68414.m06536 membrane bound O-acyl transferase (MBOAT)
family protein low similarity to skinny hedgehog
[Drosophila melanogaster] GI:15420842; contains Pfam
profile PF03062: MBOAT family
Length = 533
Score = 27.9 bits (59), Expect = 2.8
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = -1
Query: 244 LPILSLIFHIYQTPARDLPS*FPLRAHRRIREYLHCS*LYGLCLRG 107
LPILS +F ++ A + S F LRA +L S +Y + L G
Sbjct: 73 LPILSFVFAVFTVIANGVRSFFHLRAKGMAILWLSMSLIYLIYLHG 118
>At4g25110.1 68417.m03612 latex-abundant family protein (AMC2) /
caspase family protein contains similarity to
latex-abundant protein [Hevea brasiliensis] gb:AAD13216;
contains Pfam profile PF00656: ICE-like protease
(caspase) p20 domain
Length = 418
Score = 27.5 bits (58), Expect = 3.7
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -3
Query: 224 FPYLSNSRSRSSFLIPSTSPPTYTRVP 144
FP+ ++S + S+F+ P +P YT P
Sbjct: 49 FPFPNSSPAPSTFIYPPPTPSPYTHAP 75
>At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing
protein similar to GB:L02953 from [Xenopus laevis]
(Nucleic Acids Res. 21, 999-1006 (1993)); contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 369
Score = 27.5 bits (58), Expect = 3.7
Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 8/91 (8%)
Frame = +1
Query: 151 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSA 315
+++VGGL +++++L+ F YG + + + GF F+ F+ +++ D +
Sbjct: 158 KIFVGGLPPLLEEDELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQT-EDSVDRLFS 216
Query: 316 MNGIEMLGATLKVEISR---KRDGPRTGNFR 399
+ LG +VEI R KR G R +FR
Sbjct: 217 DGKVHELG-DKQVEIKRAEPKRTG-RDNSFR 245
>At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing
protein
Length = 573
Score = 27.5 bits (58), Expect = 3.7
Identities = 23/101 (22%), Positives = 40/101 (39%), Gaps = 6/101 (5%)
Frame = +1
Query: 118 TNHTIMSSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSV-----WVALNPPGFAFIEFE 282
T ++ +G T ++VG L ++E +YG++ + V+ G+ +EF
Sbjct: 192 TQSFVVDNGNTMLFVGELHWWTTDAEIESVLSQYGRVKEIKFFDERVSGKSKGYCQVEFY 251
Query: 283 NLQEAEDACSAMNGIEMLGATLKVEISRKRDGPRTG-NFRG 402
+ A MNG G V + + G NF G
Sbjct: 252 DSAAAAACKEGMNGFIFNGKACVVAFASPETLKQMGANFTG 292
>At1g10320.1 68414.m01162 U2 snRNP auxiliary factor-related similar
to U2 small nuclear ribonucleoprotein auxiliary factor
35 kD subunit related protein 1 (sp|Q15695)
Length = 757
Score = 27.5 bits (58), Expect = 3.7
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Frame = +1
Query: 190 EDLEREFDKYGKLNSVWVALNP----PGFAFIEFENLQEAEDACSAMNGIEMLGATLKVE 357
ED+ EF KYG+L + V N G ++ + +L+ A A ++NG G + E
Sbjct: 309 EDVHTEFLKYGELVNFKVCRNGSFHLKGNVYVHYRSLESAILAYQSINGRYFAGKQVNCE 368
>At5g45840.1 68418.m05639 leucine-rich repeat transmembrane protein
kinase, putative and genscan+
Length = 668
Score = 27.1 bits (57), Expect = 4.8
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -3
Query: 227 NFPYLSNSRSRSSFLIPSTSPP 162
+FP L+N++ R LIP +SPP
Sbjct: 263 SFPALTNAKKRIPPLIPPSSPP 284
>At5g41690.1 68418.m05067 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GI:7673355 from [Nicotiana tabacum]; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 620
Score = 27.1 bits (57), Expect = 4.8
Identities = 19/77 (24%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Frame = +1
Query: 154 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG----FAFIEFENLQEAEDACSAMN 321
++V L K ++ F K G++ V + +N G F+EF ++ EAE+A N
Sbjct: 129 LFVANLPYETKIPNIIDFFKKVGEVVRVQLIVNLKGKLVGCGFVEFASVNEAEEALQKKN 188
Query: 322 GIEMLGATLKVEISRKR 372
G + + ++++ K+
Sbjct: 189 GECLDNNKIFLDVANKK 205
>At5g65770.1 68418.m08276 nuclear matrix constituent protein-related
low similarity to nuclear matrix constituent protein 1
(NMCP1) [Daucus carota] GI:2190187
Length = 1042
Score = 26.6 bits (56), Expect = 6.4
Identities = 11/45 (24%), Positives = 27/45 (60%)
Frame = +1
Query: 184 KKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAM 318
+++++ E ++ KL ++ VAL+ A ++ NL+ + + SA+
Sbjct: 754 ERDEIRHEIEELKKLENLKVALDDMSMAKMQLSNLERSWEKVSAL 798
>At2g20720.1 68415.m02433 pentatricopeptide (PPR) repeat-containing
protein contains Pfam TIGR00756: pentatricopeptide
repeat domain
Length = 299
Score = 26.6 bits (56), Expect = 6.4
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +1
Query: 166 GLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAE 300
GL KE+ E+ D GK S W +L +E E+ +E E
Sbjct: 172 GLQHRCVKEEAEKVVDMLGKKESKWESLAHKVNTLVEDEDAKEEE 216
>At1g65850.1 68414.m07472 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1036
Score = 26.6 bits (56), Expect = 6.4
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -1
Query: 214 YQTPARDLPS*FPLRAHRRIREYLHC 137
Y TP+RD +RAH ++ E + C
Sbjct: 197 YSTPSRDFDGLIGMRAHMKVMEPMLC 222
>At1g53650.1 68414.m06105 RNA-binding protein, putative similar to
RNA-binding protein GB:AAA86641 GI:1174153 from
[Arabidopsis thaliana]
Length = 314
Score = 26.6 bits (56), Expect = 6.4
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Frame = +1
Query: 154 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG---FAFIEFENLQEAEDACS 312
VYV + + + +E L F G++ + +P FAF+EF + Q A A S
Sbjct: 130 VYVSDIDQSVTEEGLAGLFSSCGQVVDCRICGDPNSVLRFAFVEFSDDQGARSALS 185
>At1g26400.1 68414.m03220 FAD-binding domain-containing protein
similar to SP|P30986 reticuline oxidase precursor
(Berberine-bridge-forming enzyme) (BBE)
(Tetrahydroprotoberberine synthase) [Eschscholzia
californica]; contains PF01565 FAD binding domain
Length = 527
Score = 26.6 bits (56), Expect = 6.4
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 181 IKKEDLEREFDKYGKLNSVWVALNPPG 261
I KE LE+ + K N VW+ NP G
Sbjct: 380 IPKEGLEKIWKTMLKFNFVWIEFNPYG 406
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 26.2 bits (55), Expect = 8.5
Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Frame = +1
Query: 151 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEF 279
+++VGGL + + F KYG++ + + P GF F+ +
Sbjct: 43 KIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTY 90
>At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 451
Score = 26.2 bits (55), Expect = 8.5
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Frame = +1
Query: 181 IKKEDLEREFDKYGKLNSVWVALNPPG----FAFIEFENLQEAEDACSAMNGIEMLGATL 348
+ +E L F + G++ V + G FA+I F QEA+DA + +N + +
Sbjct: 14 VTEERLRDVFSRKGEIADVKLKRKSDGKSRQFAYIGFRTEQEAQDAITYVNKCFIDTYRI 73
Query: 349 KVEIS 363
VE++
Sbjct: 74 SVEVA 78
>At3g42730.1 68416.m04462 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; similar to At3g24380, At5g36840,
At5g35010, At3g42740, At4g05290, At2g14770, At3g43390,
At2g05560, At4g08880, At1g34730, At1g27790, At1g34740,
At1g27780, At5g36850, At1g52020, At3g24390, At4g05280,
At1g25886, At4g03300
Length = 1314
Score = 26.2 bits (55), Expect = 8.5
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +1
Query: 73 NFRLKLIIK*SYLVNTNHTIMSSGGTRVYVGGLVEGIKKED 195
N +KL+ + + L NH + S TRV +E IKK D
Sbjct: 1268 NGAIKLLHRHAPLFTRNHYPLDSVATRVLGDEFIEEIKKSD 1308
>At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 306
Score = 26.2 bits (55), Expect = 8.5
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +1
Query: 148 TRVYVGGLVEGIKKEDLEREFDKYGKL 228
T V+VGGL + + L+ F +YG++
Sbjct: 261 TTVFVGGLDASVTDDHLKNVFSQYGEI 287
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,853,421
Number of Sequences: 28952
Number of extensions: 154479
Number of successful extensions: 821
Number of sequences better than 10.0: 203
Number of HSP's better than 10.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 773
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 605614832
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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