Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_D12
(461 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 216 1e-57
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 126 1e-30
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 126 2e-30
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 107 1e-24
SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos... 27 1.4
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 27 1.4
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos... 27 1.8
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr... 26 2.4
SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual 26 2.4
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c... 26 3.2
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 26 3.2
SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1 |Schiz... 26 3.2
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 25 4.3
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 25 5.6
SPBC25H2.15 |||programmed cell death protein homolog|Schizosacch... 25 5.6
SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 7.4
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 216 bits (528), Expect = 1e-57
Identities = 98/142 (69%), Positives = 113/142 (79%)
Frame = +3
Query: 36 YNEASGGTYVPRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGA 215
+NEA+GG YVPRAVLVDLEPGTMD+V+SG FG +FRPDN ++GQSGAGN WAKGHYTEGA
Sbjct: 51 FNEAAGGKYVPRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGA 110
Query: 216 ELVDSVLDVVRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEFPDRIMNTYSVV 395
EL D+VLDVVR+EAE+CD LQGFQ KIREE+PDR+M T+SV
Sbjct: 111 ELADAVLDVVRREAEACDALQGFQLTHSLGGGTGSGMGTLLLSKIREEYPDRMMATFSVA 170
Query: 396 PSPKVSDTVVEPYNATLSVHQL 461
P+PK SDTVVEPYNATLS+HQL
Sbjct: 171 PAPKSSDTVVEPYNATLSMHQL 192
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 126 bits (305), Expect = 1e-30
Identities = 56/140 (40%), Positives = 83/140 (59%)
Frame = +3
Query: 36 YNEASGGTYVPRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGA 215
++E G YVPR++ VDLEP +D VR+GP+ +F P+ + G+ A NN+A+GHYT G
Sbjct: 53 FSETGQGKYVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGK 112
Query: 216 ELVDSVLDVVRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEFPDRIMNTYSVV 395
ELVD V D +R+ A++C LQGF ++ E+ + +SV
Sbjct: 113 ELVDEVTDKIRRIADNCSGLQGFLVFHSFGGGTGSGFGALLLERLAMEYTKKSKLQFSVY 172
Query: 396 PSPKVSDTVVEPYNATLSVH 455
P+P+VS +VVEPYN+ L+ H
Sbjct: 173 PAPQVSTSVVEPYNSVLTTH 192
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 126 bits (303), Expect = 2e-30
Identities = 55/140 (39%), Positives = 85/140 (60%)
Frame = +3
Query: 36 YNEASGGTYVPRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGA 215
++E G +VPR++ VDLEP +D VR+GP+ +F P+ V G+ A NN+A+GHYT G
Sbjct: 57 FSETGQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGK 116
Query: 216 ELVDSVLDVVRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEFPDRIMNTYSVV 395
E++DSVL+ +R+ A++C LQGF ++ E+ + +SV
Sbjct: 117 EMIDSVLERIRRMADNCSGLQGFLVFHSFGGGTGSGLGALLLERLNMEYGKKSNLQFSVY 176
Query: 396 PSPKVSDTVVEPYNATLSVH 455
P+P+VS +VVEPYN+ L+ H
Sbjct: 177 PAPQVSTSVVEPYNSVLTTH 196
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 107 bits (256), Expect = 1e-24
Identities = 49/153 (32%), Positives = 89/153 (58%), Gaps = 5/153 (3%)
Frame = +3
Query: 18 GIRHED--YNEASGGTYVPRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQS--GAGNN 185
G+ +D + ++ Y+PRA+L+DLEP ++++ S +G ++ P+N + ++ GAGNN
Sbjct: 44 GVDRKDVFFYQSDDTRYIPRAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNN 103
Query: 186 WAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEFP 365
WA G Y+ + + ++D++ +EA+ D L+GF ++ + +P
Sbjct: 104 WANG-YSHAERIFEDIMDMIDREADGSDSLEGFSLLHSIAGGTGSGLGSFLLERLNDRYP 162
Query: 366 DRIMNTYSVVP-SPKVSDTVVEPYNATLSVHQL 461
+I+ TYSV P S VSD VV+PYN+ L++ +L
Sbjct: 163 KKIIQTYSVFPNSQSVSDVVVQPYNSLLALKRL 195
>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
Plc1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 899
Score = 27.1 bits (57), Expect = 1.4
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Frame = -3
Query: 150 YRGERFVQRVLSGQSPWCQARGQQERR----EVHKCLRMLHCNPRAEFLQ 13
++GE+ + +PW + +Q + +VH+ +MLH N EFL+
Sbjct: 288 HQGEKMID-YSENLNPWEKLEKEQSAQLDLGDVHRMCQMLHLNASMEFLE 336
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 27.1 bits (57), Expect = 1.4
Identities = 20/87 (22%), Positives = 36/87 (41%), Gaps = 1/87 (1%)
Frame = +1
Query: 34 ITMKHPEALMYLAPFLLTSSLAPW-TLSAQDPLDKSFAPITSFSDSPVPVTTGLRDTTQR 210
+T EA + +++ W +L + L + S S + G +T Q
Sbjct: 755 LTKIFSEARKNAPSIIFINNVEKWPSLFSHSFLSMFLLLLDSISPLEPVMLLGFANTNQE 814
Query: 211 VLSSSIPSWM*FARKQSHVIVYKDSNS 291
LSS++ SW R + H + + D +S
Sbjct: 815 KLSSTVRSWFPSHRSEYHDLSFPDYSS 841
>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
Pof11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 506
Score = 26.6 bits (56), Expect = 1.8
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +3
Query: 120 GPFGQIFRPDNFVFGQSGAG-NNWAKGHYTEGAEL 221
GP+G +F P F+F +G NW+ Y E A L
Sbjct: 157 GPYGTMFLPQQFIFDSNGRPLLNWSY-LYKEHAHL 190
>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 905
Score = 26.2 bits (55), Expect = 2.4
Identities = 15/61 (24%), Positives = 24/61 (39%)
Frame = +3
Query: 12 AAGIRHEDYNEASGGTYVPRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWA 191
AA H +YN + T ++D+ + +GPF FG++ N W
Sbjct: 318 AASEVHSEYNYLAADTGAKYDQIIDINLSELTPSLNGPFTPDLSTPVSKFGEAIEKNKWP 377
Query: 192 K 194
K
Sbjct: 378 K 378
>SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 234
Score = 26.2 bits (55), Expect = 2.4
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +3
Query: 189 AKGHYTEGAELVDSVLDVVRKEAESCDCLQ 278
A+GH G ELV + D +RK++E+ L+
Sbjct: 183 AEGHPDVGVELVRAGADTLRKDSENHTALE 212
>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
2|||Manual
Length = 807
Score = 25.8 bits (54), Expect = 3.2
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = -2
Query: 262 DSASLRTTSKTESTSSAPSV*CPLAQLLPAPDCPKTKLSGRKICPK 125
++A+ RTTS T+ +PS L P P + S R+ CPK
Sbjct: 390 NAAADRTTSPTQGQPESPS---KSILLRPPPSIASSPESKRRKCPK 432
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 25.8 bits (54), Expect = 3.2
Identities = 12/44 (27%), Positives = 20/44 (45%)
Frame = +3
Query: 141 RPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDC 272
RP +F G++ G + E D ++ + + ESCDC
Sbjct: 955 RPSRLIF-YDNCGDSSGAGLCNKAYEHTDELITMAIERIESCDC 997
>SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 255
Score = 25.8 bits (54), Expect = 3.2
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -2
Query: 178 PAPDCPKTKLSGRKICPKGPERTESMVPGSRS 83
P+ PK L R I P GPE + + GS S
Sbjct: 20 PSTPPPKEVLHTRVIVPNGPEEIKLRLVGSHS 51
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 25.4 bits (53), Expect = 4.3
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = +1
Query: 73 PFLLTSSLAPWTLSAQDPLDKSFAPITSFSDSPVPVTTGLRDTTQRVLSSSIPS 234
P LTSS + S+QD P T + + P T+ T+ LSS++P+
Sbjct: 278 PVSLTSSSTSSSGSSQDSTTIDSTPSTIATSTLQPTTSSPITTSAPSLSSALPT 331
>SPAC29A4.11 |rga3||GTPase activating protein
Rga3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 969
Score = 25.0 bits (52), Expect = 5.6
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Frame = -2
Query: 286 WNPCRQSHDSASLRTTSKT----ESTSSAPSV*CPLAQLLPAPDCPKTKLSG 143
++P +S D+ S RT S + TSS PS AQLL P K +G
Sbjct: 355 FSPSYRSSDTHSPRTRSPNVQTHKKTSSQPSDLSSFAQLLSPPQVLSPKPNG 406
>SPBC25H2.15 |||programmed cell death protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 396
Score = 25.0 bits (52), Expect = 5.6
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +1
Query: 100 PWTLSAQDPLDKSFAPITSFSDSPVPV 180
P S +D L + +T+F SPVP+
Sbjct: 308 PLLASGRDKLGQQLKSVTNFGKSPVPL 334
>SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 24.6 bits (51), Expect = 7.4
Identities = 16/60 (26%), Positives = 28/60 (46%)
Frame = +1
Query: 187 GLRDTTQRVLSSSIPSWM*FARKQSHVIVYKDSNSHTPLEVVQAPVWAPFLSPK*GKNFL 366
GL +++ + + ++ + R Q I +H+P + + P P LSPK KN L
Sbjct: 8 GLLGKLKKLWNDTKNDYLEWERSQQGQISESVVKNHSPSKRKRRPSKEPSLSPKRRKNIL 67
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,102,319
Number of Sequences: 5004
Number of extensions: 43403
Number of successful extensions: 147
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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