Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_D12
         (461 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    25   0.30 
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    25   0.30 
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    25   0.52 
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                24   0.92 
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    23   2.1  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    23   2.1  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    23   2.1  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    21   8.5  

>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 25.4 bits (53), Expect = 0.30
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 5/42 (11%)
 Frame = +2

Query: 233 LGCSSQGSRVM*LSTRIPTHTLP-----WRWYRLRYGHPSYL 343
           LG  S+   ++ ++T I    LP     WRW RL YG  +++
Sbjct: 32  LGQDSKAKAIV-VNTLISNDILPVCNGLWRWIRLTYGQTNHI 72


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 25.4 bits (53), Expect = 0.30
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 5/42 (11%)
 Frame = +2

Query: 233 LGCSSQGSRVM*LSTRIPTHTLP-----WRWYRLRYGHPSYL 343
           LG  S+   ++ ++T I    LP     WRW RL YG  +++
Sbjct: 70  LGQDSKAKAIV-VNTLISNDILPVCNGLWRWIRLTYGQTNHI 110


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 24.6 bits (51), Expect = 0.52
 Identities = 7/20 (35%), Positives = 15/20 (75%)
 Frame = +3

Query: 222 VDSVLDVVRKEAESCDCLQG 281
           +DS+++++R   ++CD L G
Sbjct: 106 IDSIINIIRVRVDACDRLWG 125


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 23.8 bits (49), Expect = 0.92
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +1

Query: 244 FARKQSHVIVYKDSNSHTPLE 306
           FA   SH I+Y  +  H P++
Sbjct: 254 FAGLHSHTIIYLSAKGHRPID 274


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 12/48 (25%), Positives = 22/48 (45%)
 Frame = -3

Query: 177 RHRTVRKRSYRGERFVQRVLSGQSPWCQARGQQERREVHKCLRMLHCN 34
           R R   + SY+ ER  ++         + R ++E+ + HK +  L  N
Sbjct: 41  RSREREQNSYKNEREYRKYRETSKERSRDRKEREKSKEHKIISSLSNN 88


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 12/48 (25%), Positives = 22/48 (45%)
 Frame = -3

Query: 177 RHRTVRKRSYRGERFVQRVLSGQSPWCQARGQQERREVHKCLRMLHCN 34
           R R   + SY+ ER  ++         + R ++E+ + HK +  L  N
Sbjct: 41  RSREREQNSYKNEREYRKYRETSKERSRDRKEREKSKEHKIISSLSNN 88


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 12/48 (25%), Positives = 22/48 (45%)
 Frame = -3

Query: 177 RHRTVRKRSYRGERFVQRVLSGQSPWCQARGQQERREVHKCLRMLHCN 34
           R R   + SY+ ER  ++         + R ++E+ + HK +  L  N
Sbjct: 41  RSREREQNSYKNEREYRKYRETSKERSRDRKEREKSKEHKIISSLSNN 88


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 6/23 (26%), Positives = 12/23 (52%)
 Frame = -3

Query: 417 CLTLWAMVQQNMCS*FYQEILPL 349
           CL  W+ +   +   F  +I+P+
Sbjct: 392 CLAFWSFIVSTILLWFINKIIPI 414


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,994
Number of Sequences: 438
Number of extensions: 3211
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12312900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)