Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_D12
(461 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 243 5e-65
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 242 9e-65
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 241 1e-64
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 240 4e-64
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 238 2e-63
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 238 2e-63
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 237 3e-63
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 235 1e-62
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 235 1e-62
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne... 126 1e-29
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne... 126 1e-29
At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide... 124 3e-29
At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly ide... 124 3e-29
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide... 124 3e-29
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id... 124 3e-29
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne... 124 3e-29
At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin... 93 8e-20
At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin... 93 1e-19
At2g31580.1 68415.m03858 expressed protein contains Pfam profi... 33 0.071
At1g53300.1 68414.m06041 thioredoxin family protein contains Pfa... 28 3.5
At1g76890.2 68414.m08948 trihelix DNA-binding protein / GT-2 fac... 27 4.7
At1g76890.1 68414.m08947 trihelix DNA-binding protein / GT-2 fac... 27 4.7
At5g54440.1 68418.m06780 expressed protein 27 6.2
At5g26650.1 68418.m03175 MADS-box protein (AGL36) contains inter... 27 6.2
At3g19570.2 68416.m02482 expressed protein contains Pfam domain,... 27 6.2
At3g19570.1 68416.m02481 expressed protein contains Pfam domain,... 27 6.2
At4g16440.1 68417.m02488 iron hydrogenase family protein contain... 27 8.2
At1g62270.1 68414.m07025 F-box family protein contains Pfam:PF00... 27 8.2
>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
thaliana}
Length = 449
Score = 243 bits (594), Expect = 5e-65
Identities = 112/142 (78%), Positives = 120/142 (84%)
Frame = +3
Query: 36 YNEASGGTYVPRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGA 215
YNEASGG YVPRAVL+DLEPGTMDS+RSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGA
Sbjct: 52 YNEASGGRYVPRAVLMDLEPGTMDSIRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGA 111
Query: 216 ELVDSVLDVVRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEFPDRIMNTYSVV 395
EL+D+VLDVVRKEAE+CDCLQGFQ KIREE+PDR+M T+SV
Sbjct: 112 ELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVF 171
Query: 396 PSPKVSDTVVEPYNATLSVHQL 461
PSPKVSDTVVEPYNATLSVHQL
Sbjct: 172 PSPKVSDTVVEPYNATLSVHQL 193
>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
thaliana}
Length = 444
Score = 242 bits (592), Expect = 9e-65
Identities = 112/142 (78%), Positives = 120/142 (84%)
Frame = +3
Query: 36 YNEASGGTYVPRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGA 215
+NEASGG YVPRAVL+DLEPGTMDS+RSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGA
Sbjct: 51 FNEASGGKYVPRAVLMDLEPGTMDSLRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGA 110
Query: 216 ELVDSVLDVVRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEFPDRIMNTYSVV 395
EL+DSVLDVVRKEAE+CDCLQGFQ KIREE+PDR+M T+SV
Sbjct: 111 ELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVF 170
Query: 396 PSPKVSDTVVEPYNATLSVHQL 461
PSPKVSDTVVEPYNATLSVHQL
Sbjct: 171 PSPKVSDTVVEPYNATLSVHQL 192
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 241 bits (591), Expect = 1e-64
Identities = 111/142 (78%), Positives = 120/142 (84%)
Frame = +3
Query: 36 YNEASGGTYVPRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGA 215
YNEASGG YVPRAVL+DLEPGTMDS+RSGP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGA
Sbjct: 52 YNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGA 111
Query: 216 ELVDSVLDVVRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEFPDRIMNTYSVV 395
EL+D+VLDVVRKEAE+CDCLQGFQ KIREE+PDR+M T+SV
Sbjct: 112 ELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVF 171
Query: 396 PSPKVSDTVVEPYNATLSVHQL 461
PSPKVSDTVVEPYNATLSVHQL
Sbjct: 172 PSPKVSDTVVEPYNATLSVHQL 193
>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
thaliana}
Length = 449
Score = 240 bits (587), Expect = 4e-64
Identities = 112/142 (78%), Positives = 119/142 (83%)
Frame = +3
Query: 36 YNEASGGTYVPRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGA 215
YNEAS G YVPRAVL+DLEPGTMDSVRSGP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGA
Sbjct: 51 YNEASCGRYVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGA 110
Query: 216 ELVDSVLDVVRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEFPDRIMNTYSVV 395
EL+DSVLDVVRKEAE+CDCLQGFQ KIREE+PDR+M T+SV
Sbjct: 111 ELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVF 170
Query: 396 PSPKVSDTVVEPYNATLSVHQL 461
PSPKVSDTVVEPYNATLSVHQL
Sbjct: 171 PSPKVSDTVVEPYNATLSVHQL 192
>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
thaliana}
Length = 444
Score = 238 bits (582), Expect = 2e-63
Identities = 111/142 (78%), Positives = 119/142 (83%)
Frame = +3
Query: 36 YNEASGGTYVPRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGA 215
+NEASGG YVPRAVL+DLEPGTMDS+RSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGA
Sbjct: 51 FNEASGGKYVPRAVLMDLEPGTMDSLRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGA 110
Query: 216 ELVDSVLDVVRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEFPDRIMNTYSVV 395
EL+DSVLDVVRKEAE+ DCLQGFQ KIREE+PDR+M T+SV
Sbjct: 111 ELIDSVLDVVRKEAENSDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVF 170
Query: 396 PSPKVSDTVVEPYNATLSVHQL 461
PSPKVSDTVVEPYNATLSVHQL
Sbjct: 171 PSPKVSDTVVEPYNATLSVHQL 192
>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
Length = 449
Score = 238 bits (582), Expect = 2e-63
Identities = 111/142 (78%), Positives = 119/142 (83%)
Frame = +3
Query: 36 YNEASGGTYVPRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGA 215
YNEAS G +VPRAVL+DLEPGTMDSVRSGP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGA
Sbjct: 51 YNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGA 110
Query: 216 ELVDSVLDVVRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEFPDRIMNTYSVV 395
EL+DSVLDVVRKEAE+CDCLQGFQ KIREE+PDR+M T+SV
Sbjct: 111 ELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVF 170
Query: 396 PSPKVSDTVVEPYNATLSVHQL 461
PSPKVSDTVVEPYNATLSVHQL
Sbjct: 171 PSPKVSDTVVEPYNATLSVHQL 192
>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
thaliana}
Length = 449
Score = 237 bits (579), Expect = 3e-63
Identities = 109/142 (76%), Positives = 119/142 (83%)
Frame = +3
Query: 36 YNEASGGTYVPRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGA 215
YNEAS G YVPRA+L+DLEPGTMDSVR+GP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGA
Sbjct: 51 YNEASCGRYVPRAILMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGA 110
Query: 216 ELVDSVLDVVRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEFPDRIMNTYSVV 395
EL+D+VLDVVRKEAE+CDCLQGFQ KIREE+PDR+M T+SV
Sbjct: 111 ELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVF 170
Query: 396 PSPKVSDTVVEPYNATLSVHQL 461
PSPKVSDTVVEPYNATLSVHQL
Sbjct: 171 PSPKVSDTVVEPYNATLSVHQL 192
>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 235 bits (574), Expect = 1e-62
Identities = 109/142 (76%), Positives = 118/142 (83%)
Frame = +3
Query: 36 YNEASGGTYVPRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGA 215
YNEAS G +VPRAVL+DLEPGTMDS+RSGP+GQ FRPDNFVFGQSGAGNNWAKGHYTEGA
Sbjct: 51 YNEASCGRFVPRAVLMDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNNWAKGHYTEGA 110
Query: 216 ELVDSVLDVVRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEFPDRIMNTYSVV 395
EL+DSVLDVVRKEAE+CDCLQGFQ KIREE+PDR+M T+SV
Sbjct: 111 ELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVF 170
Query: 396 PSPKVSDTVVEPYNATLSVHQL 461
PSPKVSDTVVEPYNATLSVHQL
Sbjct: 171 PSPKVSDTVVEPYNATLSVHQL 192
>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 235 bits (574), Expect = 1e-62
Identities = 109/142 (76%), Positives = 118/142 (83%)
Frame = +3
Query: 36 YNEASGGTYVPRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGA 215
YNEAS G +VPRAVL+DLEPGTMDS+RSGP+GQ FRPDNFVFGQSGAGNNWAKGHYTEGA
Sbjct: 51 YNEASCGRFVPRAVLMDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNNWAKGHYTEGA 110
Query: 216 ELVDSVLDVVRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEFPDRIMNTYSVV 395
EL+DSVLDVVRKEAE+CDCLQGFQ KIREE+PDR+M T+SV
Sbjct: 111 ELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVF 170
Query: 396 PSPKVSDTVVEPYNATLSVHQL 461
PSPKVSDTVVEPYNATLSVHQL
Sbjct: 171 PSPKVSDTVVEPYNATLSVHQL 192
>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 126 bits (303), Expect = 1e-29
Identities = 61/152 (40%), Positives = 87/152 (57%), Gaps = 4/152 (2%)
Frame = +3
Query: 18 GIRHEDYN----EASGGTYVPRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNN 185
G+ H+ +N E G +VPRAV VDLEP +D VR+G + Q+F P+ + G+ A NN
Sbjct: 43 GVAHDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANN 102
Query: 186 WAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEFP 365
+A+GHYT G E+VD LD VRK A++C LQGF ++ ++
Sbjct: 103 FARGHYTVGKEIVDLCLDRVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYG 162
Query: 366 DRIMNTYSVVPSPKVSDTVVEPYNATLSVHQL 461
+ +++ PSP+VS VVEPYN+ LS H L
Sbjct: 163 KKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSL 194
>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 126 bits (303), Expect = 1e-29
Identities = 61/152 (40%), Positives = 87/152 (57%), Gaps = 4/152 (2%)
Frame = +3
Query: 18 GIRHEDYN----EASGGTYVPRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNN 185
G+ H+ +N E G +VPRAV VDLEP +D VR+G + Q+F P+ + G+ A NN
Sbjct: 43 GVAHDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANN 102
Query: 186 WAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEFP 365
+A+GHYT G E+VD LD VRK A++C LQGF ++ ++
Sbjct: 103 FARGHYTVGKEIVDLCLDRVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYG 162
Query: 366 DRIMNTYSVVPSPKVSDTVVEPYNATLSVHQL 461
+ +++ PSP+VS VVEPYN+ LS H L
Sbjct: 163 KKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSL 194
>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 450
Score = 124 bits (299), Expect = 3e-29
Identities = 58/142 (40%), Positives = 84/142 (59%)
Frame = +3
Query: 36 YNEASGGTYVPRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGA 215
++E G +VPRAV VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G
Sbjct: 53 FSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGK 112
Query: 216 ELVDSVLDVVRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEFPDRIMNTYSVV 395
E+VD LD +RK A++C LQGF ++ ++ + ++V
Sbjct: 113 EIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVY 172
Query: 396 PSPKVSDTVVEPYNATLSVHQL 461
PSP+VS +VVEPYN+ LS H L
Sbjct: 173 PSPQVSTSVVEPYNSVLSTHSL 194
>At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 427
Score = 124 bits (299), Expect = 3e-29
Identities = 58/142 (40%), Positives = 84/142 (59%)
Frame = +3
Query: 36 YNEASGGTYVPRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGA 215
++E G +VPRAV VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G
Sbjct: 53 FSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGK 112
Query: 216 ELVDSVLDVVRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEFPDRIMNTYSVV 395
E+VD LD +RK A++C LQGF ++ ++ + ++V
Sbjct: 113 EIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVY 172
Query: 396 PSPKVSDTVVEPYNATLSVHQL 461
PSP+VS +VVEPYN+ LS H L
Sbjct: 173 PSPQVSTSVVEPYNSVLSTHSL 194
>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
identical to SP|P11139 Tubulin alpha-1 chain
{Arabidopsis thaliana}
Length = 450
Score = 124 bits (299), Expect = 3e-29
Identities = 57/142 (40%), Positives = 85/142 (59%)
Frame = +3
Query: 36 YNEASGGTYVPRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGA 215
++E S G +VPRAV +DLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G
Sbjct: 53 FSETSSGQHVPRAVFLDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGR 112
Query: 216 ELVDSVLDVVRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEFPDRIMNTYSVV 395
E+VD+ L+ +RK A++C LQGF ++ +F + +++
Sbjct: 113 EIVDTCLERLRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDFGKKSKLGFTIY 172
Query: 396 PSPKVSDTVVEPYNATLSVHQL 461
PSP+VS VVEPYN+ LS H L
Sbjct: 173 PSPQVSTAVVEPYNSVLSTHSL 194
>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
identical to tubulin alpha-2/alpha-4 chain SP|P29510
GB:P29510 from [Arabidopsis thaliana]
Length = 450
Score = 124 bits (299), Expect = 3e-29
Identities = 58/142 (40%), Positives = 84/142 (59%)
Frame = +3
Query: 36 YNEASGGTYVPRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGA 215
++E G +VPRAV VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G
Sbjct: 53 FSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGK 112
Query: 216 ELVDSVLDVVRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEFPDRIMNTYSVV 395
E+VD LD +RK A++C LQGF ++ ++ + ++V
Sbjct: 113 EIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVY 172
Query: 396 PSPKVSDTVVEPYNATLSVHQL 461
PSP+VS +VVEPYN+ LS H L
Sbjct: 173 PSPQVSTSVVEPYNSVLSTHSL 194
>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
chain from [Arabidopsis thaliana]
Length = 450
Score = 124 bits (299), Expect = 3e-29
Identities = 58/142 (40%), Positives = 84/142 (59%)
Frame = +3
Query: 36 YNEASGGTYVPRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGA 215
++E G +VPRAV VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G
Sbjct: 53 FSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGK 112
Query: 216 ELVDSVLDVVRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEFPDRIMNTYSVV 395
E+VD LD +RK A++C LQGF ++ ++ + ++V
Sbjct: 113 EIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVY 172
Query: 396 PSPKVSDTVVEPYNATLSVHQL 461
PSP+VS +VVEPYN+ LS H L
Sbjct: 173 PSPQVSTSVVEPYNSVLSTHSL 194
>At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin
(TUBG2) identical to SP|P38558 Tubulin gamma-2 chain
(Gamma-2 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 93.1 bits (221), Expect = 8e-20
Identities = 43/145 (29%), Positives = 80/145 (55%), Gaps = 3/145 (2%)
Frame = +3
Query: 36 YNEASGGTYVPRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGHYTE 209
+ +A Y+PRA+L+DLEP ++ +++G + ++ +N GAGNNWA G Y +
Sbjct: 52 FYQADDQHYIPRALLIDLEPRVINGIQNGEYRNLYNHENIFLSDHGGGAGNNWASG-YHQ 110
Query: 210 GAELVDSVLDVVRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEFPDRIMNTYS 389
G + + ++D++ +EA+ D L+GF + + + +++ TYS
Sbjct: 111 GKGVEEEIMDMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLETLNDRYSKKLVQTYS 170
Query: 390 VVPSP-KVSDTVVEPYNATLSVHQL 461
V P+ + SD VV+PYN+ L++ +L
Sbjct: 171 VFPNQMETSDVVVQPYNSLLTLKRL 195
>At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin
(TUBG1) identical to SP|P38557 Tubulin gamma-1 chain
(Gamma-1 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 92.7 bits (220), Expect = 1e-19
Identities = 43/145 (29%), Positives = 80/145 (55%), Gaps = 3/145 (2%)
Frame = +3
Query: 36 YNEASGGTYVPRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGHYTE 209
+ +A Y+PRA+L+DLEP ++ +++G + ++ +N GAGNNWA G Y +
Sbjct: 52 FYQADDQHYIPRALLIDLEPRVINGIQNGDYRNLYNHENIFVADHGGGAGNNWASG-YHQ 110
Query: 210 GAELVDSVLDVVRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEFPDRIMNTYS 389
G + + ++D++ +EA+ D L+GF + + + +++ TYS
Sbjct: 111 GKGVEEEIMDMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLETLNDRYSKKLVQTYS 170
Query: 390 VVPSP-KVSDTVVEPYNATLSVHQL 461
V P+ + SD VV+PYN+ L++ +L
Sbjct: 171 VFPNQMETSDVVVQPYNSLLTLKRL 195
>At2g31580.1 68415.m03858 expressed protein contains Pfam profile:
PF04446 family of unknown function (DUF549)
Length = 567
Score = 33.5 bits (73), Expect = 0.071
Identities = 23/71 (32%), Positives = 32/71 (45%)
Frame = +3
Query: 219 LVDSVLDVVRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEFPDRIMNTYSVVP 398
+++SV VVRKEAE+C+CLQ F RE D + Y V
Sbjct: 1 MINSV-GVVRKEAENCNCLQVF--FVSGSFKVDSVEAKKKEENFRETLRDMANSKYEYVK 57
Query: 399 SPKVSDTVVEP 431
S ++ D V+ P
Sbjct: 58 SFELEDEVMLP 68
>At1g53300.1 68414.m06041 thioredoxin family protein contains Pfam
profiles PF00085: Thioredoxin, PF00515: TPR Domain;
similar to tetratricopeptide repeat protein 2
(GI:7248701) [Drosophila melanogaster]; similar to DnaJ
homolog subfamily C member 7 (Tetratricopeptide repeat
protein 2) (TPR repeat protein 2) (Swiss-Prot:Q99615)
[Homo sapiens]
Length = 699
Score = 27.9 bits (59), Expect = 3.5
Identities = 23/75 (30%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
Frame = -2
Query: 283 NPCRQSHDSASLRTTSKTESTSSAPSV*CPLAQLLPAPDCPKTKLSGRKICPKGPERTES 104
N R DSA+ ++S ++ S+ S + PAP P L ICP G +
Sbjct: 98 NNLRPRSDSATTSSSSHSQPLLSSSSS----SATSPAPTSPANVLPTGNICPSGKIQITG 153
Query: 103 MVPG-SRSTRTARGT 62
M SRS GT
Sbjct: 154 MTQSRSRSDVLGSGT 168
>At1g76890.2 68414.m08948 trihelix DNA-binding protein / GT-2 factor
(GT2) identical to GT2 factor [Arabidopsis thaliana]
GI:416490, GI:2664202 (DNA binding factor GT-2 from
Arabidopsis)
Length = 575
Score = 27.5 bits (58), Expect = 4.7
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +1
Query: 85 TSSLAPWTLSAQDPLDKSFAPITSFSDSPV-PVTT 186
TSSL PW S+ +KS +P+ V P+TT
Sbjct: 153 TSSLIPWISSSNPSTEKSSSPLKHHHQVSVQPITT 187
>At1g76890.1 68414.m08947 trihelix DNA-binding protein / GT-2 factor
(GT2) identical to GT2 factor [Arabidopsis thaliana]
GI:416490, GI:2664202 (DNA binding factor GT-2 from
Arabidopsis)
Length = 498
Score = 27.5 bits (58), Expect = 4.7
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +1
Query: 85 TSSLAPWTLSAQDPLDKSFAPITSFSDSPV-PVTT 186
TSSL PW S+ +KS +P+ V P+TT
Sbjct: 76 TSSLIPWISSSNPSTEKSSSPLKHHHQVSVQPITT 110
>At5g54440.1 68418.m06780 expressed protein
Length = 829
Score = 27.1 bits (57), Expect = 6.2
Identities = 10/44 (22%), Positives = 25/44 (56%)
Frame = +1
Query: 214 LSSSIPSWM*FARKQSHVIVYKDSNSHTPLEVVQAPVWAPFLSP 345
++++ +WM RK+ HV + ++ S + ++ P+ A ++ P
Sbjct: 747 VNANSENWMIAGRKRGHVSLSEEQGSRVVISILCVPLVAGYVRP 790
>At5g26650.1 68418.m03175 MADS-box protein (AGL36) contains interpro
domain: IPR002100 transcriptor factor, MADS box;
contains Pfam profile PF00319: SRF-type transcription
factor (DNA-binding and dimerisation domain)
Length = 327
Score = 27.1 bits (57), Expect = 6.2
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +1
Query: 154 SFSDSPVPVTTGLRDT 201
SFSDSP+ TTG+ DT
Sbjct: 183 SFSDSPIHATTGVVDT 198
>At3g19570.2 68416.m02482 expressed protein contains Pfam domain,
PF04484: Family of unknown function (DUF566)
Length = 644
Score = 27.1 bits (57), Expect = 6.2
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Frame = -2
Query: 268 SHDSASLRTTSKTESTSSAPSV*CPLAQLLPAPDCPKTKLSGRKI--CPKG-PERTESM 101
SH + + TT+ + STSS+ SV ++ P+P +T S + P P+R++S+
Sbjct: 57 SHSTTTTTTTATSTSTSSSSSVILRSSKRYPSPLLSRTTNSASNLVYTPSSLPKRSQSV 115
>At3g19570.1 68416.m02481 expressed protein contains Pfam domain,
PF04484: Family of unknown function (DUF566)
Length = 627
Score = 27.1 bits (57), Expect = 6.2
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Frame = -2
Query: 268 SHDSASLRTTSKTESTSSAPSV*CPLAQLLPAPDCPKTKLSGRKI--CPKG-PERTESM 101
SH + + TT+ + STSS+ SV ++ P+P +T S + P P+R++S+
Sbjct: 57 SHSTTTTTTTATSTSTSSSSSVILRSSKRYPSPLLSRTTNSASNLVYTPSSLPKRSQSV 115
>At4g16440.1 68417.m02488 iron hydrogenase family protein contains
Pfam profiles: PF02906 Iron only hydrogenase large
subunit, C-terminal domain, PF02256 Iron hydrogenase
small subunit
Length = 451
Score = 26.6 bits (56), Expect = 8.2
Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Frame = +1
Query: 211 VLSSSIPSWM*FARKQ--SHVIVYKDSNSHTPLEVVQAPV 324
VLSS+ P W+ +A KQ S+V+ Y S+ +P + + A +
Sbjct: 149 VLSSACPGWICYAEKQLGSYVLPYV-SSVKSPQQAIGAAI 187
>At1g62270.1 68414.m07025 F-box family protein contains Pfam:PF00646
F-box domain
Length = 383
Score = 26.6 bits (56), Expect = 8.2
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -3
Query: 459 TDVPKVWHCMVLQQCLTLWAMVQQNMCS 376
T V KV+HC L C T+ +V N C+
Sbjct: 106 TFVSKVFHCNGLLLCTTMTGLVVWNPCT 133
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,380,463
Number of Sequences: 28952
Number of extensions: 241174
Number of successful extensions: 759
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 748
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 772134480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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