Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_D11
(337 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23131| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.6
SB_7587| Best HMM Match : zf-C2H2 (HMM E-Value=3.5e-13) 28 1.6
SB_56509| Best HMM Match : Ebp2 (HMM E-Value=2.1) 27 2.9
SB_38395| Best HMM Match : TAFII28 (HMM E-Value=2.9) 27 5.0
SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.0
SB_37867| Best HMM Match : PH (HMM E-Value=0.0027) 26 8.7
SB_37102| Best HMM Match : zf-C2H2 (HMM E-Value=0) 26 8.7
SB_25409| Best HMM Match : PSD1 (HMM E-Value=7.2) 26 8.7
SB_24384| Best HMM Match : I-set (HMM E-Value=4.3e-31) 26 8.7
SB_19167| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.7
SB_58808| Best HMM Match : Pox_A32 (HMM E-Value=1.4) 26 8.7
SB_35194| Best HMM Match : EGF_2 (HMM E-Value=0) 26 8.7
SB_14245| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.7
>SB_23131| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 91
Score = 28.3 bits (60), Expect = 1.6
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 27 TKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTC 131
T+ GIT T Y +S +K+V + T+ A TC
Sbjct: 19 TRWSGITCMMSTHYSSSYKKLVPRQLTTRWASITC 53
>SB_7587| Best HMM Match : zf-C2H2 (HMM E-Value=3.5e-13)
Length = 351
Score = 28.3 bits (60), Expect = 1.6
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 69 GASLRKMVKKMEVTQHAKYTCSFCGK 146
G +K ++ E++ H KY CS CGK
Sbjct: 210 GGVTKKQIQSNEIS-HKKYVCSTCGK 234
>SB_56509| Best HMM Match : Ebp2 (HMM E-Value=2.1)
Length = 298
Score = 27.5 bits (58), Expect = 2.9
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = +3
Query: 126 TCSFCGKDAMKRS 164
TC+FCGKDA K S
Sbjct: 243 TCNFCGKDARKTS 255
>SB_38395| Best HMM Match : TAFII28 (HMM E-Value=2.9)
Length = 292
Score = 26.6 bits (56), Expect = 5.0
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -1
Query: 265 LTADLHDEAAVVENTQAP 212
+TADLHD A VV N + P
Sbjct: 247 ITADLHDTARVVVNLRTP 264
>SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3486
Score = 26.6 bits (56), Expect = 5.0
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -1
Query: 265 LTADLHDEAAVVENTQAP 212
+TADLHD A VV N + P
Sbjct: 972 ITADLHDTARVVVNLRTP 989
>SB_37867| Best HMM Match : PH (HMM E-Value=0.0027)
Length = 369
Score = 25.8 bits (54), Expect = 8.7
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +1
Query: 25 APRRSELLVNMAHVMVHLYVKWSKRWK*LNT-RNTLAHSAAR 147
AP + +L H HL+ +W RW L+T RN L + R
Sbjct: 206 APNK-QLHCGYLHKRGHLFKQWKSRWFVLDTQRNQLRYYETR 246
>SB_37102| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 618
Score = 25.8 bits (54), Expect = 8.7
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +3
Query: 81 RKMVKKMEVTQHAKYTCSFCGKDAMKRS 164
R+ VK + + + KY C C KD + S
Sbjct: 410 REQVKDLFIKEGEKYRCRLCSKDFTRLS 437
>SB_25409| Best HMM Match : PSD1 (HMM E-Value=7.2)
Length = 889
Score = 25.8 bits (54), Expect = 8.7
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = -1
Query: 253 LHDEAAVV--ENTQAPPATVLLHRLHDQMPTHERFMASLPQNEQVY 122
LHD AA V + + P T+ LH +PT+ R + P+ Y
Sbjct: 409 LHDAAASVYTASNEPPEFTIELHHELGYLPTYPRKVTIRPRKVPTY 454
>SB_24384| Best HMM Match : I-set (HMM E-Value=4.3e-31)
Length = 1399
Score = 25.8 bits (54), Expect = 8.7
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = +3
Query: 132 SFCGKDAMKRSCVGIWSCKRCKRTVAGGAWVFSTTAASSCRSAVRRL 272
S C KDA ++ VG ++C RCK G + S+CR +RL
Sbjct: 911 SACHKDAACQNTVGSYAC-RCKEGYEGDGY-------SNCRVEKKRL 949
>SB_19167| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 227
Score = 25.8 bits (54), Expect = 8.7
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Frame = -1
Query: 280 TSRNLLTADLHDEAAVVENT----QAPPATVLLHRLHDQMPTHER 158
T++N A+ H+E + Q PPA H ++Q PTH R
Sbjct: 109 TNKNHSPAESHEERPWKNHDSLEHQPPPAEENTHHEYNQQPTHVR 153
>SB_58808| Best HMM Match : Pox_A32 (HMM E-Value=1.4)
Length = 326
Score = 25.8 bits (54), Expect = 8.7
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +1
Query: 31 RRSELLVNMAHVMVHLYVKW 90
RRS+ LVN+A HL+ KW
Sbjct: 276 RRSDQLVNLAFSARHLHHKW 295
>SB_35194| Best HMM Match : EGF_2 (HMM E-Value=0)
Length = 960
Score = 25.8 bits (54), Expect = 8.7
Identities = 10/39 (25%), Positives = 17/39 (43%)
Frame = +3
Query: 135 FCGKDAMKRSCVGIWSCKRCKRTVAGGAWVFSTTAASSC 251
+C C+ W+ KRC + G + F+ T +C
Sbjct: 594 YCDHVTGSCECLPGWTGKRCDQACPSGTYGFNCTLPCAC 632
>SB_14245| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 244
Score = 25.8 bits (54), Expect = 8.7
Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Frame = -2
Query: 168 HMNVSWHPCRRMSKCISRVELLP-SF*PFYVKMHHNVCHIYQ*FRPSWCV 22
H+ VS+ PC S C+ LLP P H + PSWCV
Sbjct: 10 HLGVSFTPCYCPSWCVLHPVLLPILMCPSPRATAHLDVSFTPCYCPSWCV 59
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,277,679
Number of Sequences: 59808
Number of extensions: 178381
Number of successful extensions: 552
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 552
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 473307974
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -