Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_D09
         (410 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.15c |||sphingosine hydroxylase |Schizosaccharomyces pomb...    25   3.5  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    25   3.5  
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    25   6.1  
SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1 |Schizosaccharom...    25   6.1  

>SPBC887.15c |||sphingosine hydroxylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 293

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = +3

Query: 69  QWPYARFLFWQWSYVWTRPYKSLLNLSCKQIKDFVNGHNYRRPL-LAKGQVSGHP 230
           Q+ +A F+   W Y W R     L+ + K++ + ++ H++R  +  A G +  HP
Sbjct: 133 QYFFAFFIIDSWQYFWHR----YLHYN-KKLYNMIHAHHHRLQVPYAMGALYNHP 182


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 2386

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
 Frame = -2

Query: 118  VHTYDHCQNKKRAYGHCSVVCYHDDNKY---EASCRFL 14
            V  Y  C+N     GH  V+ Y ++ K    E S RFL
Sbjct: 1775 VEIYSECENTHYYLGHHRVLMYEEEQKLPVNEQSERFL 1812


>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1502

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
 Frame = -2

Query: 127  YGRVHTYDHCQNKKRAY-GHCSVVCYHDDNKYEASCRFLHR 8
            +G  H + HC NK+      C +     DN    +C    R
Sbjct: 1367 FGGQHDFQHCINKRLILEDGCELASVQLDNALSRNCSLFER 1407


>SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +3

Query: 75  PYARFLFWQWSYVWTRPYKSLLNLS-CKQIKDFVNGHNYRRPLLAKGQVSGH 227
           P + +    W  +W + ++  LN+S  K+  D ++GH    P  A+G  +G+
Sbjct: 25  PKSNYDLTSWR-IWEQAFR--LNVSNSKKCFDTISGHRITLPTNARGLFTGY 73


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,736,742
Number of Sequences: 5004
Number of extensions: 33873
Number of successful extensions: 79
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)