Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_D09
         (410 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_08_0007 + 27551173-27551828,27552071-27552282,27553371-275535...    30   0.63 
11_08_0004 + 27518384-27519018,27519147-27519397,27520437-275205...    27   4.4  
01_05_0418 + 21964094-21964482,21964558-21964681                       27   4.4  
05_05_0127 - 22580720-22580808,22580936-22580987,22581703-225819...    27   5.8  
06_01_0739 + 5468642-5468857,5468978-5469051,5469651-5470083           27   7.7  

>11_08_0007 +
           27551173-27551828,27552071-27552282,27553371-27553550,
           27555154-27556187
          Length = 693

 Score = 30.3 bits (65), Expect = 0.63
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 58  CYHDDNKYEASCRFLHRG 5
           CY  +  Y+  CRFLHRG
Sbjct: 312 CYDTEGGYKCKCRFLHRG 329


>11_08_0004 +
           27518384-27519018,27519147-27519397,27520437-27520559,
           27523499-27524529
          Length = 679

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -2

Query: 58  CYHDDNKYEASCRFLHRG 5
           CY  +  Y+  CRF HRG
Sbjct: 318 CYDTEGGYKCKCRFPHRG 335


>01_05_0418 + 21964094-21964482,21964558-21964681
          Length = 170

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +3

Query: 72  WPYARFLFWQWSYVWTRPYKS 134
           WP AR   W  S  W +PY++
Sbjct: 118 WPRARLCRWLQSRCWRKPYRA 138


>05_05_0127 -
           22580720-22580808,22580936-22580987,22581703-22581908,
           22582019-22582152,22582239-22582369,22583333-22583392,
           22583615-22583755,22583880-22584347,22584524-22584686,
           22585373-22585476,22585755-22585853,22586177-22586281,
           22586516-22586596,22587168-22587986,22588497-22588553
          Length = 902

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = -2

Query: 124 GRVHTYDHCQNK-KRAYGHCSVVCYHDDNKYEASCRFLH 11
           G +  Y+ CQ++ KR Y      CY + + Y   C  LH
Sbjct: 692 GDLPEYNQCQSQLKRLYAEGIKGCYFEFSAYNLLCVMLH 730


>06_01_0739 + 5468642-5468857,5468978-5469051,5469651-5470083
          Length = 240

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 1  GSPGAGIGTRLHIYYRRGNIQL 66
          G  G G+G RLH  +  GN+ L
Sbjct: 34 GGGGDGVGRRLHQLHHHGNVDL 55


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,636,446
Number of Sequences: 37544
Number of extensions: 233999
Number of successful extensions: 472
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 472
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 730630428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)