Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_D09
         (410 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9502| Best HMM Match : DUF1118 (HMM E-Value=6.5)                    29   2.0  
SB_47088| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.6  
SB_29745| Best HMM Match : TPR_MLP1_2 (HMM E-Value=0.04)               28   2.6  
SB_25393| Best HMM Match : Collagen (HMM E-Value=0.00015)              28   3.4  
SB_29610| Best HMM Match : Extensin_2 (HMM E-Value=2.3)                27   6.0  
SB_59678| Best HMM Match : Lectin_C (HMM E-Value=3.3e-19)              27   6.0  
SB_50582| Best HMM Match : Mito_carr (HMM E-Value=2.1e-23)             27   6.0  
SB_30941| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.0  
SB_21239| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  

>SB_9502| Best HMM Match : DUF1118 (HMM E-Value=6.5)
          Length = 393

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 20/58 (34%), Positives = 28/58 (48%)
 Frame = +1

Query: 67  NNGRTRASYFGNGRMYGHVHINLY*TCHANKSKISSTDTIIGDHYWLRVRYQDTLLQL 240
           N  R+ A+ + NG  + +  +NL+ T H NK     TD+II     L  R    LL L
Sbjct: 243 NLARSAAAAYHNGTTFFYEQVNLHKTFHINK----GTDSIINQSVNLPRRSMSGLLLL 296


>SB_47088| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 259

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 19/52 (36%), Positives = 22/52 (42%), Gaps = 5/52 (9%)
 Frame = -2

Query: 157 CLHDKFSRDLYGRVH-TYD-HCQNKKRAYGHCSVVCYHDDN---KYEASCRF 17
           C   K SR  Y   +  YD HC   K      S  CYH DN   + +  CRF
Sbjct: 51  CCEGKCSRRAYCNGYCVYDRHCDETKDEVCSLSSQCYHKDNVATRPKGFCRF 102


>SB_29745| Best HMM Match : TPR_MLP1_2 (HMM E-Value=0.04)
          Length = 1481

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = -2

Query: 184  LCPLTKSLICLHDKFSRDLYGRVHTYDHCQNKKRAYG 74
            +C L K  I LHD+  +  YG     +HC N     G
Sbjct: 1194 ICKLLKEKITLHDQLMKSKYGTT-LCEHCLNDPETRG 1229


>SB_25393| Best HMM Match : Collagen (HMM E-Value=0.00015)
          Length = 391

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = +3

Query: 18  NRHEASYLLSSW*HTTEQWPYARFLFWQWSYVWT 119
           N H+ +Y    W +   QW Y  + +   +Y WT
Sbjct: 144 NNHQWTYNNHQWTYNQRQWTYNNYQWTYNNYQWT 177


>SB_29610| Best HMM Match : Extensin_2 (HMM E-Value=2.3)
          Length = 1353

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -3

Query: 87  SARTAIVQLYVTTTIINMKPRADSCTGGS 1
           SA  AI  +Y++  ++++ PRA +C G S
Sbjct: 52  SASNAICNMYISAWVVDLPPRA-NCLGSS 79


>SB_59678| Best HMM Match : Lectin_C (HMM E-Value=3.3e-19)
          Length = 951

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
 Frame = +3

Query: 123 PYKSLLNLSCKQIKDFVNGHNYRRPLLAKGQVS----GHPAATEMK--YMVWD 263
           PY S+ +L+CKQ   FV     R+PL A+ ++S      P+A  +K   + WD
Sbjct: 229 PYGSMADLNCKQKHQFV----CRKPLEAREKISVRRRRRPSAANLKSPNVSWD 277


>SB_50582| Best HMM Match : Mito_carr (HMM E-Value=2.1e-23)
          Length = 1026

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
 Frame = +1

Query: 31  LHIYYRRGNIQLNNGRTRASYFGN--GRMYGHV 123
           +H YYR  N   N+GR   S F N     Y HV
Sbjct: 122 IHHYYRNSNKSRNDGRAGCSKFLNHTDHKYNHV 154


>SB_30941| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 330

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
 Frame = +1

Query: 31  LHIYYRRGNIQLNNGRTRASYFGN--GRMYGHV 123
           +H YYR  N   N+GR   S F N     Y HV
Sbjct: 122 IHHYYRNSNKSRNDGRAGCSKFLNHTDHKYNHV 154


>SB_21239| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 124

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 88  KRAYGHCSVVCYHDDNKYEAS 26
           K + GH   VC H +N+Y+ S
Sbjct: 55  KGSIGHAFTVCIHTENQYQVS 75


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,292,031
Number of Sequences: 59808
Number of extensions: 261190
Number of successful extensions: 1313
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1309
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 752487277
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)