Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_D09
         (410 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70307-5|CAA94331.1|  209|Caenorhabditis elegans Hypothetical pr...    35   0.026
Z70307-2|CAA94335.1|  208|Caenorhabditis elegans Hypothetical pr...    35   0.026
Z70307-4|CAA94330.1|  209|Caenorhabditis elegans Hypothetical pr...    29   0.99 
AC006655-2|AAF39876.1|  208|Caenorhabditis elegans Hypothetical ...    29   1.3  
Z82084-4|CAB04980.1|  667|Caenorhabditis elegans Hypothetical pr...    28   3.0  
Z81030-14|CAJ43441.1|   75|Caenorhabditis elegans Hypothetical p...    27   4.0  
AC025726-25|AAK73927.2|  409|Caenorhabditis elegans Hypothetical...    27   4.0  
Z49908-5|CAA90096.1|  353|Caenorhabditis elegans Hypothetical pr...    27   5.3  
Z95559-2|CAB09000.3|  520|Caenorhabditis elegans Hypothetical pr...    27   7.0  
Z19152-2|CAA79544.1| 1150|Caenorhabditis elegans Hypothetical pr...    27   7.0  
AF025453-4|ABC48262.1|  905|Caenorhabditis elegans Hypothetical ...    27   7.0  
AF025453-3|AAM98053.2|  828|Caenorhabditis elegans Hypothetical ...    27   7.0  
Z81560-2|CAB04547.1| 1021|Caenorhabditis elegans Hypothetical pr...    26   9.2  
Z75952-4|CAB00094.2|  303|Caenorhabditis elegans Hypothetical pr...    26   9.2  
AL110477-17|CAJ43446.1|  332|Caenorhabditis elegans Hypothetical...    26   9.2  

>Z70307-5|CAA94331.1|  209|Caenorhabditis elegans Hypothetical
           protein C39E9.5 protein.
          Length = 209

 Score = 34.7 bits (76), Expect = 0.026
 Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 4/67 (5%)
 Frame = +3

Query: 162 KDFVNGHNYRRPLLAKGQV----SGHPAATEMKYMVWDEELXXXXXXXXXQNKNFHNPDK 329
           +  VN HN  R  +AKG+     +   +AT M  M WD  L              H+PDK
Sbjct: 24  QSMVNAHNAVRSSIAKGEYVAKGTKKDSATNMLKMKWDNSLAQSAQNYANGCPMQHSPDK 83

Query: 330 TLGSGRF 350
           + G   F
Sbjct: 84  SYGENLF 90


>Z70307-2|CAA94335.1|  208|Caenorhabditis elegans Hypothetical
           protein C39E9.2 protein.
          Length = 208

 Score = 34.7 bits (76), Expect = 0.026
 Identities = 25/76 (32%), Positives = 34/76 (44%), Gaps = 4/76 (5%)
 Frame = +3

Query: 171 VNGHNYRRPLLAKGQV----SGHPAATEMKYMVWDEELXXXXXXXXXQNKNFHNPDKTLG 338
           +N HN  R  +AKG      +  PAA++M  M WD  +           + + N   T  
Sbjct: 28  LNVHNTLRSRIAKGTYVAKGTAKPAASDMLKMKWDATVAASA-------QAYANKCPTGH 80

Query: 339 SGRFQTGETLYWYSTT 386
           SG    GE LYWY T+
Sbjct: 81  SGAAGLGENLYWYWTS 96


>Z70307-4|CAA94330.1|  209|Caenorhabditis elegans Hypothetical
           protein C39E9.4 protein.
          Length = 209

 Score = 29.5 bits (63), Expect = 0.99
 Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 4/76 (5%)
 Frame = +3

Query: 171 VNGHNYRRPLLAKG--QVSG--HPAATEMKYMVWDEELXXXXXXXXXQNKNFHNPDKTLG 338
           V+ HN  R  LA G   ++G   PA + ++ M WD  L           + + N   T  
Sbjct: 29  VDLHNSFRSKLATGTYSINGTLKPAGSNIRKMSWDSTLATSA-------QTYANTCPTGF 81

Query: 339 SGRFQTGETLYWYSTT 386
           S    TGE LYW +T+
Sbjct: 82  SNTQGTGENLYWRTTS 97


>AC006655-2|AAF39876.1|  208|Caenorhabditis elegans Hypothetical
           protein H10D18.4 protein.
          Length = 208

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
 Frame = +3

Query: 171 VNGHNYRRPLLAKGQV----SGHPAATEMKYMVWDEELXXXXXXXXXQNKNFHNPDKTLG 338
           V+ HN  R  +A+G      +  P+A+ M+ +VWDE +         Q      PD   G
Sbjct: 27  VDAHNKLRSAIAQGSYVAAGTQEPSASNMRKIVWDETV-----AAAAQEYAEGCPDDHSG 81

Query: 339 SGRFQTGETLYW 374
           +     GE LYW
Sbjct: 82  T---SYGENLYW 90


>Z82084-4|CAB04980.1|  667|Caenorhabditis elegans Hypothetical
           protein ZK1053.4 protein.
          Length = 667

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 14/24 (58%), Positives = 15/24 (62%)
 Frame = -2

Query: 127 YGRVHTYDHCQNKKRAYGHCSVVC 56
           YG V TYDH QN+K    HC V C
Sbjct: 281 YGTVFTYDH-QNRK-FQEHCCVEC 302


>Z81030-14|CAJ43441.1|   75|Caenorhabditis elegans Hypothetical
           protein C01G10.17 protein.
          Length = 75

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +1

Query: 34  HIYYRRGNIQLNNGRTRASYFGNGRMYGHVHINLY*TCHAN 156
           + YY   N   NNG T   Y+ N    G+ + N    C++N
Sbjct: 23  YYYYPNNNYNNNNGYTTYYYYPNNNNNGYYYNNGCSGCNSN 63


>AC025726-25|AAK73927.2|  409|Caenorhabditis elegans Hypothetical
           protein Y71G12B.26 protein.
          Length = 409

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +3

Query: 9   RCRNRHEASYLLSSW*-HTTEQWPYARFLFWQWSYV 113
           R ++RHE + + S+   HT +QW  A   F QW+ V
Sbjct: 4   REKSRHELALIASTGAYHTFDQWTRALLPFAQWNLV 39


>Z49908-5|CAA90096.1|  353|Caenorhabditis elegans Hypothetical
           protein C07E3.5 protein.
          Length = 353

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 49  RGNIQLNNGRTRASYFGNGRMYGH 120
           R NI+L + + R  YF   RMY H
Sbjct: 221 RKNIRLTDDQVREEYFNRQRMYPH 244


>Z95559-2|CAB09000.3|  520|Caenorhabditis elegans Hypothetical
           protein Y41E3.3 protein.
          Length = 520

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = +3

Query: 90  LFWQWSYVWTRP 125
           LF+ W+YVWT+P
Sbjct: 499 LFFIWAYVWTKP 510


>Z19152-2|CAA79544.1| 1150|Caenorhabditis elegans Hypothetical
           protein B0464.2 protein.
          Length = 1150

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
 Frame = +1

Query: 40  YYRRGNIQLNNGRTRASYFGNGRMYGHVH-----INLY*TCHANKSKISSTDTIIGDHY 201
           YY +   Q NNG    +++G G+MY H +     I  + T H      + T  I+G  Y
Sbjct: 342 YYYQAR-QANNGEHTLAHYGLGQMYIHRNEIEEAIKCFDTVHKRLPNNTDTMKILGSLY 399


>AF025453-4|ABC48262.1|  905|Caenorhabditis elegans Hypothetical
           protein C08F1.5b protein.
          Length = 905

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 174 NGHNYRRPLLAKGQVSGHPAATEMKYMVWD 263
           NGHNY++  + K + +G    TE  ++ WD
Sbjct: 587 NGHNYKQAAMLKFEKAGGQGITE--FIKWD 614


>AF025453-3|AAM98053.2|  828|Caenorhabditis elegans Hypothetical
           protein C08F1.5a protein.
          Length = 828

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 174 NGHNYRRPLLAKGQVSGHPAATEMKYMVWD 263
           NGHNY++  + K + +G    TE  ++ WD
Sbjct: 510 NGHNYKQAAMLKFEKAGGQGITE--FIKWD 537


>Z81560-2|CAB04547.1| 1021|Caenorhabditis elegans Hypothetical
           protein K02E2.2 protein.
          Length = 1021

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 9/27 (33%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +3

Query: 96  WQWSYVWTRPYKSLLNLSC-KQIKDFV 173
           W  ++ W+ PY+SL+   C + +KD +
Sbjct: 36  WNQTHAWSHPYQSLIVECCDESLKDLL 62


>Z75952-4|CAB00094.2|  303|Caenorhabditis elegans Hypothetical
           protein F29D10.3 protein.
          Length = 303

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = -2

Query: 130 LYGRVHTYDHCQNKKRAYGHCSVVCYHDDNKYEASCRFLHRG 5
           +YG    Y++    +  + +C V CY DD+   + C  L  G
Sbjct: 42  VYGETDEYNNHSEIQENWDNCLVKCYWDDDCLVSYCIGLRFG 83


>AL110477-17|CAJ43446.1|  332|Caenorhabditis elegans Hypothetical
           protein Y113G7B.1b protein.
          Length = 332

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 13/50 (26%), Positives = 26/50 (52%)
 Frame = +3

Query: 12  CRNRHEASYLLSSW*HTTEQWPYARFLFWQWSYVWTRPYKSLLNLSCKQI 161
           C + HE+ + L       EQW   + +F +W      P++ L+++SC ++
Sbjct: 199 CHSGHESIHEL----FLLEQWKQVKSVFIKWFPFDDFPFEHLVHVSCFEL 244


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,723,533
Number of Sequences: 27780
Number of extensions: 193393
Number of successful extensions: 421
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 421
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 662437636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)