Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_D09
         (410 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g21430.1 68416.m02704 expressed protein                             28   2.1  
At4g25780.1 68417.m03710 pathogenesis-related protein, putative ...    27   6.5  

>At3g21430.1 68416.m02704 expressed protein 
          Length = 961

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 13/28 (46%), Positives = 21/28 (75%), Gaps = 1/28 (3%)
 Frame = -2

Query: 175 LTKSLICLHDKFSRDLY-GRVHTYDHCQ 95
           +++ +ICLH K SR+++ G V T DHC+
Sbjct: 528 VSQRVICLHPK-SREIHDGNVLTVDHCR 554


>At4g25780.1 68417.m03710 pathogenesis-related protein, putative
           similar to gene PR-1 protein - Medicago truncatula,
           SP|Q40374; contains Pfam profile PF00188: SCP-like
           extracellular protein
          Length = 190

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 10/41 (24%), Positives = 17/41 (41%)
 Frame = +3

Query: 252 MVWDEELXXXXXXXXXQNKNFHNPDKTLGSGRFQTGETLYW 374
           ++WD  L         Q +       ++ +G F  GE +YW
Sbjct: 71  LIWDRRLQNYAQGWANQRRGDCALRHSVSNGEFNLGENIYW 111


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,237,068
Number of Sequences: 28952
Number of extensions: 184246
Number of successful extensions: 391
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 391
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 615542944
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)