Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_D08
         (334 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.      21   2.6  
DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc gr...    21   3.4  
AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical pro...    20   7.8  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    20   7.8  

>DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.
          Length = 305

 Score = 21.4 bits (43), Expect = 2.6
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +1

Query: 172 PSENEVMESDQVIFLD 219
           PS NE++ S+ ++FLD
Sbjct: 141 PSTNELVFSEVLLFLD 156


>DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc
           growth factor 2 protein.
          Length = 439

 Score = 21.0 bits (42), Expect = 3.4
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -3

Query: 161 SFTPSIFFNRANSFTAY 111
           SF P +FF  A  F AY
Sbjct: 3   SFKPLLFFAVATLFAAY 19


>AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical
           protein protein.
          Length = 205

 Score = 19.8 bits (39), Expect = 7.8
 Identities = 5/13 (38%), Positives = 9/13 (69%)
 Frame = -2

Query: 51  CDSQIKIFMRRAF 13
           CD+   +F+R+ F
Sbjct: 163 CDNNFNVFLRQVF 175


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 19.8 bits (39), Expect = 7.8
 Identities = 10/38 (26%), Positives = 17/38 (44%)
 Frame = +2

Query: 167 TNHQRMRLWNRIKLYSWTLEP*RRGKRNRSPLKRKTKT 280
           TN     +W+   + S+TLE  R    +  P+   T +
Sbjct: 211 TNSANSSIWSPASIDSFTLEQHRSWCSSSQPVLSTTNS 248


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.313    0.128    0.357 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 63,736
Number of Sequences: 336
Number of extensions: 1099
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 49
effective length of database: 106,121
effective search space used:  6473381
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.2 bits)