Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_D08
(334 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1B3.18c |mrps18||mitochondrial ribosomal protein subunit S18... 27 0.57
SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces pomb... 27 0.57
SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces pomb... 25 3.0
SPCC1919.03c |||AMP-activated protein kinase beta subunit |Schiz... 25 4.0
SPBC14C8.02 |tim44||TIM23 translocase complex subunit Tim44|Schi... 25 4.0
SPAC12G12.11c |||DUF544 family protein|Schizosaccharomyces pombe... 24 7.0
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch... 24 7.0
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 24 7.0
SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|ch... 24 7.0
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 24 7.0
SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos... 23 9.2
SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyce... 23 9.2
>SPAC1B3.18c |mrps18||mitochondrial ribosomal protein subunit
S18|Schizosaccharomyces pombe|chr 1|||Manual
Length = 223
Score = 27.5 bits (58), Expect = 0.57
Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = -3
Query: 167 FSSFT-PSIFFNRANSFTAYRSRLIALHFRFHLLLN 63
F SFT SIFF+ F Y+S L L F +L+LN
Sbjct: 14 FISFTFSSIFFSSLILFLVYKSVLSKLFFIKYLMLN 49
>SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 775
Score = 27.5 bits (58), Expect = 0.57
Identities = 9/23 (39%), Positives = 19/23 (82%)
Frame = +1
Query: 121 KELARLKKMLGVKDENKPSENEV 189
+E+A L+KMLG+K ++K + +++
Sbjct: 115 REIAHLEKMLGIKSKDKSAHSKI 137
>SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 955
Score = 25.0 bits (52), Expect = 3.0
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = -2
Query: 303 LIVRTHLHVFVFLFNGLRFLFP 238
L+++ +++ LFNG+ F FP
Sbjct: 842 LLLKNSQELYIILFNGMVFTFP 863
>SPCC1919.03c |||AMP-activated protein kinase beta subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 298
Score = 24.6 bits (51), Expect = 4.0
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +1
Query: 70 SRWKRKCRAIKRERYAV 120
SRWK+K + +K E Y V
Sbjct: 119 SRWKKKIQLLKSEDYTV 135
>SPBC14C8.02 |tim44||TIM23 translocase complex subunit
Tim44|Schizosaccharomyces pombe|chr 2|||Manual
Length = 427
Score = 24.6 bits (51), Expect = 4.0
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +1
Query: 76 WKRKCRAIKRERYAVKELARLKK 144
WK K IK E V+++ LKK
Sbjct: 211 WKNKVEQIKNESRLVRKIQELKK 233
>SPAC12G12.11c |||DUF544 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 23.8 bits (49), Expect = 7.0
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +3
Query: 42 ENHNGEIIKKQMEAKM*SYQTRTI 113
+ HN E + E SYQTRTI
Sbjct: 12 QEHNNETQNHKQEDHSNSYQTRTI 35
>SPBP19A11.04c |mor2|cps12|morphogenesis protein
Mor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2196
Score = 23.8 bits (49), Expect = 7.0
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -2
Query: 270 FLFNGLRFLFPLL*GSSVQEYNLIRFHNLIL 178
F FN L L G + +E +L+++HN+IL
Sbjct: 1525 FDFNVESSLITGLRGKTKKEDDLVKYHNMIL 1555
>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 661
Score = 23.8 bits (49), Expect = 7.0
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -3
Query: 128 NSFTAYRSRLIALHFRFHL 72
NSF R RL+A+H HL
Sbjct: 361 NSFFRNRHRLLAIHLATHL 379
>SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 775
Score = 23.8 bits (49), Expect = 7.0
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = -3
Query: 155 TPSIFFNRANSFTAYRSRLIALHFRFHLLLNDFAIVILKLK 33
T +F F R+RL A + + LLLN+ V KLK
Sbjct: 637 TNQLFELELKKFDPLRNRLHASYRQQQLLLNEMRNVTQKLK 677
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 23.8 bits (49), Expect = 7.0
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -1
Query: 184 HSLMVCFHLLLRAFSLIEPILL 119
HS + F LLL + S +EP++L
Sbjct: 784 HSFLSMFLLLLDSISPLEPVML 805
>SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 640
Score = 23.4 bits (48), Expect = 9.2
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Frame = +1
Query: 46 ITMAKSLRSRWKRKCRAIKRERYAVKELARLKKMLGV-----KDENKPSENEVMESDQV 207
I K ++ K+ IKR VKEL +++K L V E K S+ + ++S V
Sbjct: 115 IAPCKEVKGYVKKAVEMIKRRDKKVKELEKIQKELLVVYELPDPETKKSKIKALQSQLV 173
>SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 698
Score = 23.4 bits (48), Expect = 9.2
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = -3
Query: 167 FSSFTPSIFFNRANSFTAY 111
F++ P +F N + SFT+Y
Sbjct: 247 FANGLPPVFLNSSRSFTSY 265
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.313 0.128 0.357
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,136,892
Number of Sequences: 5004
Number of extensions: 18862
Number of successful extensions: 46
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 93942212
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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